Wall clock time and date at job start Tue Mar 31 2020 02:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08996 * 109.47542 * 2 1 4 4 C 1.50698 * 109.47149 * 239.99845 * 2 1 3 5 5 H 1.08005 * 119.99919 * 275.01916 * 4 2 1 6 6 C 1.37873 * 120.00515 * 95.01661 * 4 2 1 7 7 N 1.31508 * 120.00618 * 184.90204 * 6 4 2 8 8 Si 1.86807 * 119.99480 * 4.89780 * 6 4 2 9 9 H 1.48503 * 109.47044 * 84.80368 * 8 6 4 10 10 H 1.48503 * 109.47110 * 204.79994 * 8 6 4 11 11 H 1.48499 * 109.47347 * 324.80306 * 8 6 4 12 12 N 1.46505 * 109.47342 * 119.99955 * 2 1 3 13 13 C 1.46502 * 119.99697 * 59.99627 * 12 2 1 14 14 S 1.65594 * 120.00226 * 240.00001 * 12 2 1 15 15 O 1.42099 * 106.40343 * 203.53479 * 14 12 2 16 16 O 1.42108 * 106.40149 * 336.45673 * 14 12 2 17 17 N 1.65600 * 107.21992 * 89.99330 * 14 12 2 18 18 C 1.46503 * 119.99628 * 65.00121 * 17 14 12 19 19 C 1.53004 * 109.47149 * 165.00052 * 18 17 14 20 20 H 1.09000 * 112.84734 * 43.80546 * 19 18 17 21 21 C 1.53781 * 113.61746 * 175.00173 * 19 18 17 22 22 C 1.53772 * 87.08283 * 139.98037 * 21 19 18 23 23 H 1.08999 * 113.61555 * 89.11994 * 22 21 19 24 24 O 1.42905 * 113.61658 * 219.93279 * 22 21 19 25 25 C 1.53781 * 87.08309 * 334.56767 * 22 21 19 26 26 H 1.09001 * 109.47123 * 54.83931 * 1 2 3 27 27 H 1.09009 * 109.47309 * 294.84349 * 1 2 3 28 28 H 1.08997 * 109.47897 * 174.84302 * 1 2 3 29 29 H 0.96999 * 120.00117 * 180.02562 * 7 6 4 30 30 H 1.08996 * 109.47248 * 90.00326 * 13 12 2 31 31 H 1.09008 * 109.46740 * 210.00376 * 13 12 2 32 32 H 1.09004 * 109.47396 * 329.99999 * 13 12 2 33 33 H 0.96998 * 120.00538 * 245.00410 * 17 14 12 34 34 H 1.08998 * 109.47448 * 284.99665 * 18 17 14 35 35 H 1.09000 * 109.47453 * 45.00125 * 18 17 14 36 36 H 1.09003 * 113.61189 * 254.53089 * 21 19 18 37 37 H 1.09005 * 113.61323 * 25.42924 * 21 19 18 38 38 H 0.96694 * 114.00274 * 180.02562 * 24 22 21 39 39 H 1.09004 * 113.61479 * 270.88322 * 25 22 21 40 40 H 1.08997 * 113.61483 * 139.98233 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2304 5 1 2.1351 -1.7856 -1.2291 6 6 2.3605 0.0120 -2.3579 7 7 2.7064 -0.6132 -3.4620 8 14 2.3137 1.8790 -2.3173 9 1 3.5989 2.3948 -1.7810 10 1 2.1072 2.3990 -3.6929 11 1 1.1981 2.3274 -1.4459 12 7 2.0183 -0.6906 1.1962 13 6 1.6643 -2.0932 1.4280 14 16 2.9704 0.1141 2.2862 15 8 3.7117 -0.8790 2.9815 16 8 3.5795 1.1829 1.5748 17 7 1.9607 0.8091 3.3997 18 6 1.1509 -0.0351 4.2817 19 6 0.6086 0.8077 5.4378 20 1 0.2271 1.7758 5.1132 21 6 -0.3566 0.0424 6.3583 22 6 0.3211 0.7618 7.5363 23 1 -0.1384 1.7179 7.7867 24 8 0.5214 -0.0735 8.6784 25 6 1.5639 0.8915 6.6400 26 1 -0.3633 0.5918 -0.8402 27 1 -0.3634 0.4318 0.9326 28 1 -0.3635 -1.0234 -0.0924 29 1 2.9377 -0.1049 -4.2551 30 1 2.4156 -2.7377 0.9717 31 1 1.6237 -2.2852 2.5003 32 1 0.6903 -2.3002 0.9847 33 1 1.9054 1.7751 3.4681 34 1 0.3187 -0.4565 3.7178 35 1 1.7668 -0.8423 4.6782 36 1 -1.4021 0.3186 6.2211 37 1 -0.1990 -1.0362 6.3563 38 1 0.9469 0.3735 9.4228 39 1 2.2466 0.0451 6.7151 40 1 2.0689 1.8532 6.7303 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351422164.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:01 Heat of formation + Delta-G solvation = -136.732698 kcal Electronic energy + Delta-G solvation = -22647.386454 eV Core-core repulsion = 19202.486265 eV Total energy + Delta-G solvation = -3444.900190 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.129 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.36375 -38.37503 -37.98518 -36.91149 -36.73916 -34.85696 -34.49623 -31.65056 -28.16560 -27.35442 -26.95544 -26.60433 -23.31830 -22.43920 -20.82799 -19.99093 -19.27168 -18.78089 -18.53766 -17.97464 -17.37292 -16.67095 -16.31060 -16.01892 -15.43459 -15.29606 -14.88588 -14.73315 -14.52450 -14.38532 -13.68463 -13.60940 -13.50390 -13.39862 -13.33961 -13.18061 -13.02851 -12.96122 -12.62499 -12.47969 -12.38543 -12.14915 -12.03140 -11.78944 -11.71121 -11.31326 -11.22844 -10.74710 -10.68607 -10.35670 -9.71494 -8.32465 -6.35791 -0.36886 1.29912 1.40368 1.43371 2.01826 2.32192 2.60897 3.07311 3.30229 3.44647 3.58466 3.69012 3.89371 3.99394 4.03294 4.26625 4.41365 4.43861 4.63192 4.69643 4.75262 4.83464 4.86297 4.88721 4.90376 4.91879 5.01150 5.11437 5.13678 5.27240 5.35617 5.51944 5.54646 5.59530 5.91154 6.17991 6.33852 6.70938 6.95158 7.29803 8.83601 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.029117 B = 0.004300 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.411908 B = 6510.742230 C = 6527.958842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.235 3.765 3 H 0.046 0.954 4 C -0.518 4.518 5 H 0.048 0.952 6 C 0.021 3.979 7 N -0.939 5.939 8 Si 0.915 3.085 9 H -0.281 1.281 10 H -0.278 1.278 11 H -0.230 1.230 12 N -0.993 5.993 13 C 0.102 3.898 14 S 2.788 3.212 15 O -1.012 7.012 16 O -1.019 7.019 17 N -1.113 6.113 18 C 0.123 3.877 19 C -0.109 4.109 20 H 0.118 0.882 21 C -0.123 4.123 22 C 0.078 3.922 23 H 0.103 0.897 24 O -0.582 6.582 25 C -0.171 4.171 26 H 0.049 0.951 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.267 0.733 30 H 0.031 0.969 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.424 0.576 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.393 0.607 39 H 0.074 0.926 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.508 5.470 22.425 24.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.130 3.870 3 H 0.064 0.936 4 C -0.558 4.558 5 H 0.067 0.933 6 C -0.178 4.178 7 N -0.579 5.579 8 Si 0.738 3.262 9 H -0.207 1.207 10 H -0.204 1.204 11 H -0.153 1.153 12 N -0.835 5.835 13 C -0.043 4.043 14 S 2.798 3.202 15 O -0.995 6.995 16 O -1.003 7.003 17 N -0.877 5.877 18 C -0.003 4.003 19 C -0.129 4.129 20 H 0.136 0.864 21 C -0.161 4.161 22 C 0.019 3.981 23 H 0.121 0.879 24 O -0.390 6.390 25 C -0.209 4.209 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.050 0.950 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.259 0.741 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.110 0.890 37 H 0.102 0.898 38 H 0.243 0.757 39 H 0.093 0.907 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.765 4.881 21.859 24.051 hybrid contribution 0.560 1.233 -0.400 1.412 sum -8.205 6.115 21.459 23.774 Atomic orbital electron populations 1.22107 0.95094 1.02026 1.00810 1.18980 0.93450 0.92111 0.82416 0.93587 1.21473 1.43144 0.94877 0.96344 0.93345 1.25759 0.94214 1.02720 0.95139 1.70011 1.47563 1.37714 1.02602 0.86233 0.80395 0.81446 0.78081 1.20711 1.20384 1.15324 1.57673 1.70053 1.21042 1.34715 1.21361 1.01654 0.80321 1.00972 1.01458 0.73775 0.72434 0.72544 1.93515 1.69961 1.61401 1.74640 1.93545 1.75883 1.57408 1.73443 1.55692 1.62273 1.18127 1.51650 1.21471 0.94605 0.92994 0.91183 1.22541 0.97460 1.00447 0.92442 0.86363 1.23095 0.99558 1.00599 0.92866 1.23425 0.95782 0.94394 0.84510 0.87908 1.86490 1.83539 1.42163 1.26816 1.23806 0.97775 1.02846 0.96477 0.93173 0.91580 0.92200 0.92388 0.95019 0.89905 0.89693 0.74053 0.89979 0.91339 0.88984 0.89815 0.75676 0.90690 0.90356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.02 9.04 71.98 0.65 -4.37 16 2 C 0.24 10.42 2.28 44.24 0.10 10.52 16 3 H 0.05 2.15 4.06 -2.39 -0.01 2.14 16 4 C -0.52 -28.70 8.82 25.60 0.23 -28.47 16 5 H 0.05 2.93 7.67 -2.91 -0.02 2.91 16 6 C 0.02 1.21 5.47 84.65 0.46 1.67 16 7 N -0.94 -58.23 13.96 21.44 0.30 -57.93 16 8 Si 0.91 44.50 26.99 68.60 1.85 46.35 16 9 H -0.28 -14.35 7.11 99.48 0.71 -13.64 16 10 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 11 H -0.23 -9.84 6.82 99.48 0.68 -9.16 16 12 N -0.99 -38.40 3.12 -520.44 -1.62 -40.02 16 13 C 0.10 3.39 9.39 127.77 1.20 4.59 16 14 S 2.79 103.45 6.09 -56.49 -0.34 103.11 16 15 O -1.01 -41.20 16.68 -128.00 -2.14 -43.33 16 16 O -1.02 -46.17 16.70 -128.00 -2.14 -48.30 16 17 N -1.11 -27.30 6.05 -187.48 -1.14 -28.43 16 18 C 0.12 2.39 6.08 86.38 0.53 2.92 16 19 C -0.11 -1.53 3.79 -10.27 -0.04 -1.57 16 20 H 0.12 1.26 8.12 -2.39 -0.02 1.24 16 21 C -0.12 -1.62 7.47 31.12 0.23 -1.38 16 22 C 0.08 0.97 5.21 31.12 0.16 1.13 16 23 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 24 O -0.58 -8.69 13.67 -148.98 -2.04 -10.72 16 25 C -0.17 -2.53 7.47 31.12 0.23 -2.29 16 26 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 28 H 0.06 2.05 6.88 -2.39 -0.02 2.03 16 29 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 30 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.08 2.17 7.79 -2.38 -0.02 2.15 16 32 H 0.08 2.55 6.53 -2.39 -0.02 2.54 16 33 H 0.42 8.49 8.64 -96.74 -0.84 7.66 16 34 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.07 1.49 7.45 -2.39 -0.02 1.47 16 36 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.08 1.29 8.10 -2.38 -0.02 1.27 16 38 H 0.39 2.53 9.12 -74.06 -0.68 1.86 16 39 H 0.07 1.40 7.90 -2.38 -0.02 1.38 16 40 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -77.35 336.91 -3.99 -81.34 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -0.48 Total: 15.20 kcal Atomic # 6 Polarization: -21.00 SS G_CDS: 3.75 Total: -17.25 kcal Atomic # 7 Polarization: -123.92 SS G_CDS: -2.46 Total: -126.38 kcal Atomic # 8 Polarization: -96.05 SS G_CDS: -6.31 Total: -102.36 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.85 Total: 46.35 kcal Atomic # 16 Polarization: 103.45 SS G_CDS: -0.34 Total: 103.11 kcal Total: -77.35 -3.99 -81.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351422164.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.394 kcal (2) G-P(sol) polarization free energy of solvation -77.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds