Wall clock time and date at job start Tue Mar 31 2020 02:44:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.08996 * 109.47090 * 2 1
4 4 C 1.50692 * 109.47195 * 120.00578 * 2 1 3
5 5 H 1.07997 * 120.00431 * 119.99566 * 4 2 1
6 6 C 1.37880 * 120.00264 * 299.99882 * 4 2 1
7 7 N 1.31519 * 119.99521 * 0.02562 * 6 4 2
8 8 Si 1.86795 * 120.00410 * 180.02562 * 6 4 2
9 9 H 1.48506 * 109.47062 * 359.97438 * 8 6 4
10 10 H 1.48498 * 109.47299 * 119.99937 * 8 6 4
11 11 H 1.48505 * 109.47309 * 240.00124 * 8 6 4
12 12 N 1.46499 * 109.46706 * 240.00297 * 2 1 3
13 13 C 1.46494 * 120.00584 * 300.00135 * 12 2 1
14 14 S 1.65606 * 119.99862 * 119.99957 * 12 2 1
15 15 O 1.42102 * 106.40116 * 336.46139 * 14 12 2
16 16 O 1.42099 * 106.40321 * 203.53880 * 14 12 2
17 17 N 1.65601 * 107.21574 * 90.00037 * 14 12 2
18 18 C 1.46493 * 120.00102 * 64.99892 * 17 14 12
19 19 C 1.53003 * 109.47111 * 165.00117 * 18 17 14
20 20 H 1.08997 * 112.91098 * 43.75037 * 19 18 17
21 21 C 1.53781 * 113.61480 * 175.00222 * 19 18 17
22 22 C 1.53786 * 87.17350 * 139.93948 * 21 19 18
23 23 H 1.08993 * 113.61491 * 89.15923 * 22 21 19
24 24 O 1.42902 * 113.61284 * 220.06071 * 22 21 19
25 25 C 1.53782 * 113.61259 * 272.50057 * 19 18 17
26 26 H 1.09003 * 109.47249 * 59.99480 * 1 2 3
27 27 H 1.08996 * 109.47296 * 179.97438 * 1 2 3
28 28 H 1.09007 * 109.47068 * 299.99544 * 1 2 3
29 29 H 0.97003 * 119.99953 * 180.02562 * 7 6 4
30 30 H 1.09000 * 109.47099 * 270.00565 * 13 12 2
31 31 H 1.09006 * 109.47019 * 30.00089 * 13 12 2
32 32 H 1.08998 * 109.47719 * 149.99674 * 13 12 2
33 33 H 0.97003 * 120.00039 * 245.00491 * 17 14 12
34 34 H 1.08994 * 109.47006 * 45.00281 * 18 17 14
35 35 H 1.09002 * 109.47617 * 284.99736 * 18 17 14
36 36 H 1.09002 * 113.61445 * 254.52948 * 21 19 18
37 37 H 1.09002 * 113.61408 * 25.34678 * 21 19 18
38 38 H 0.96700 * 113.99699 * 179.97438 * 24 22 21
39 39 H 1.08997 * 113.61668 * 334.56352 * 25 19 18
40 40 H 1.08994 * 113.61387 * 105.47087 * 25 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0324 -0.7105 1.2303
5 1 2.6532 -1.5886 1.1312
6 6 1.6993 -0.2396 2.4827
7 7 0.9428 0.8294 2.6034
8 14 2.3226 -1.1198 4.0078
9 1 3.1475 -2.2867 3.6035
10 1 3.1473 -0.1862 4.8160
11 1 1.1679 -1.5870 4.8164
12 7 2.0183 -0.6906 -1.1962
13 6 1.6643 -2.0930 -1.4282
14 16 2.9703 0.1143 -2.2863
15 8 2.6903 1.4974 -2.1192
16 8 2.8226 -0.5643 -3.5260
17 7 4.5437 -0.1042 -1.8182
18 6 5.1356 -1.4440 -1.8418
19 6 6.6576 -1.3311 -1.7338
20 1 6.9773 -0.6102 -0.9814
21 6 7.3701 -2.6897 -1.6269
22 6 8.4460 -2.1133 -2.5624
23 1 9.2554 -1.6066 -2.0370
24 8 8.9144 -3.0454 -3.5391
25 6 7.3603 -1.1579 -3.0907
26 1 -0.3634 0.5139 -0.8900
27 1 -0.3634 -1.0276 -0.0005
28 1 -0.3633 0.5138 0.8901
29 1 0.7088 1.1610 3.4845
30 1 2.4156 -2.7376 -0.9719
31 1 0.6903 -2.3001 -0.9849
32 1 1.6236 -2.2850 -2.5004
33 1 5.0733 0.6550 -1.5282
34 1 4.8735 -1.9405 -2.7759
35 1 4.7539 -2.0248 -1.0020
36 1 7.7367 -2.9129 -0.6250
37 1 6.8067 -3.5138 -2.0648
38 1 9.5910 -2.6885 -4.1306
39 1 6.7950 -1.5630 -3.9300
40 1 7.7190 -0.1445 -3.2703
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001351422183.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:44:04
Heat of formation + Delta-G solvation = -108.935726 kcal
Electronic energy + Delta-G solvation = -22675.882312 eV
Core-core repulsion = 19232.187490 eV
Total energy + Delta-G solvation = -3443.694822 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 292.129 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-39.56994 -36.67439 -36.15275 -35.81651 -35.23407 -33.76361 -32.60023 -29.06490
-27.10537 -25.85415 -25.54432 -25.14011 -22.41253 -20.76933 -19.88744 -18.62532
-17.80143 -17.12908 -16.68926 -16.37872 -15.89573 -15.54195 -15.09735 -14.49595
-14.40523 -13.98465 -13.44260 -13.23528 -12.87468 -12.64973 -12.57219 -12.27316
-11.93224 -11.78486 -11.63912 -11.50208 -11.35773 -11.18541 -11.14913 -11.02009
-10.86802 -10.82915 -10.51407 -10.42151 -10.26449 -10.03362 -9.94043 -9.33218
-9.03330 -8.49415 -7.95272 -6.10010 -4.18227 1.28915 3.22523 3.31147
3.33234 3.51757 4.00699 4.12889 4.34800 4.42333 4.45975 4.64564
4.71298 5.01331 5.17477 5.20590 5.30161 5.56778 5.61826 5.67755
5.71036 5.74766 5.82498 6.03197 6.12248 6.20998 6.30778 6.38719
6.65502 6.84496 6.87408 7.10271 7.27175 7.43398 7.54155 7.64328
7.78421 8.04457 8.26144 8.85312 9.48159 10.95051
Molecular weight = 292.13amu
Principal moments of inertia in cm(-1)
A = 0.015615 B = 0.005393 C = 0.004393
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1792.734912 B = 5191.129528 C = 6371.795519
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C 0.267 3.733
3 H 0.059 0.941
4 C -0.522 4.522
5 H 0.063 0.937
6 C 0.063 3.937
7 N -0.887 5.887
8 Si 0.896 3.104
9 H -0.274 1.274
10 H -0.284 1.284
11 H -0.284 1.284
12 N -0.990 5.990
13 C 0.098 3.902
14 S 2.784 3.216
15 O -0.983 6.983
16 O -1.000 7.000
17 N -1.127 6.127
18 C 0.135 3.865
19 C -0.114 4.114
20 H 0.100 0.900
21 C -0.121 4.121
22 C 0.073 3.927
23 H 0.081 0.919
24 O -0.561 6.561
25 C -0.165 4.165
26 H 0.013 0.987
27 H 0.033 0.967
28 H 0.093 0.907
29 H 0.263 0.737
30 H 0.042 0.958
31 H 0.075 0.925
32 H 0.061 0.939
33 H 0.412 0.588
34 H 0.074 0.926
35 H 0.069 0.931
36 H 0.076 0.924
37 H 0.093 0.907
38 H 0.376 0.624
39 H 0.092 0.908
40 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.987 -5.120 -7.997 15.293
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C 0.165 3.835
3 H 0.076 0.924
4 C -0.562 4.562
5 H 0.081 0.919
6 C -0.140 4.140
7 N -0.526 5.526
8 Si 0.724 3.276
9 H -0.198 1.198
10 H -0.211 1.211
11 H -0.210 1.210
12 N -0.833 5.833
13 C -0.048 4.048
14 S 2.792 3.208
15 O -0.967 6.967
16 O -0.984 6.984
17 N -0.885 5.885
18 C 0.008 3.992
19 C -0.134 4.134
20 H 0.119 0.881
21 C -0.160 4.160
22 C 0.014 3.986
23 H 0.098 0.902
24 O -0.366 6.366
25 C -0.203 4.203
26 H 0.032 0.968
27 H 0.052 0.948
28 H 0.111 0.889
29 H 0.073 0.927
30 H 0.061 0.939
31 H 0.094 0.906
32 H 0.079 0.921
33 H 0.244 0.756
34 H 0.093 0.907
35 H 0.088 0.912
36 H 0.095 0.905
37 H 0.112 0.888
38 H 0.223 0.777
39 H 0.111 0.889
40 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges 11.050 -5.064 -8.392 14.771
hybrid contribution 1.056 0.071 1.275 1.657
sum 12.107 -4.993 -7.118 14.905
Atomic orbital electron populations
1.22070 0.98071 0.99604 1.00823 1.18724 0.91819 0.92732 0.80269
0.92364 1.21414 1.31673 1.12981 0.90133 0.91929 1.24935 0.95015
0.94993 0.99008 1.69895 1.36350 1.22688 1.23655 0.86479 0.78615
0.79560 0.82905 1.19840 1.21053 1.21016 1.57654 1.64545 1.21368
1.39695 1.21279 1.01859 0.81845 0.99833 1.01718 0.72643 0.73078
0.73324 1.93592 1.83690 1.32523 1.86901 1.93523 1.86093 1.76421
1.42358 1.55978 1.32253 1.14869 1.85445 1.21140 0.92370 0.83708
1.01944 1.22522 0.94309 0.98309 0.98254 0.88137 1.23074 0.96112
0.97468 0.99313 1.23410 0.94234 0.90601 0.90314 0.90155 1.86538
1.60991 1.41144 1.47938 1.23821 0.98336 1.00111 0.97985 0.96836
0.94822 0.88865 0.92732 0.93939 0.90647 0.92068 0.75556 0.90741
0.91244 0.90512 0.88802 0.77748 0.88909 0.91245
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.47 8.95 37.16 0.33 -3.14 16
2 C 0.27 6.49 2.62 -69.09 -0.18 6.31 16
3 H 0.06 1.57 6.91 -51.93 -0.36 1.21 16
4 C -0.52 -13.28 8.37 -34.44 -0.29 -13.57 16
5 H 0.06 1.55 7.65 -52.49 -0.40 1.15 16
6 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16
7 N -0.89 -24.28 11.32 55.43 0.63 -23.65 16
8 Si 0.90 20.26 29.54 -169.99 -5.02 15.24 16
9 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16
10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16
11 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16
12 N -0.99 -20.30 3.12 -115.86 -0.36 -20.66 16
13 C 0.10 1.73 9.90 59.84 0.59 2.32 16
14 S 2.78 53.98 6.14 -107.50 -0.66 53.32 16
15 O -0.98 -22.31 16.70 -57.17 -0.95 -23.26 16
16 O -1.00 -20.31 16.21 -57.17 -0.93 -21.23 16
17 N -1.13 -17.41 6.05 -10.62 -0.06 -17.47 16
18 C 0.14 1.81 6.08 -4.04 -0.02 1.78 16
19 C -0.11 -1.23 3.79 -89.80 -0.34 -1.57 16
20 H 0.10 1.01 8.12 -51.93 -0.42 0.59 16
21 C -0.12 -1.22 7.47 -25.92 -0.19 -1.41 16
22 C 0.07 0.67 5.22 -25.82 -0.13 0.53 16
23 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16
24 O -0.56 -5.41 13.67 -35.23 -0.48 -5.89 16
25 C -0.16 -1.63 7.47 -25.82 -0.19 -1.83 16
26 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16
27 H 0.03 0.74 6.66 -51.93 -0.35 0.39 16
28 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16
29 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16
30 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16
31 H 0.07 1.33 6.43 -51.93 -0.33 1.00 16
32 H 0.06 0.99 7.02 -51.93 -0.36 0.62 16
33 H 0.41 5.68 8.64 -34.47 -0.30 5.38 16
34 H 0.07 1.00 7.45 -51.93 -0.39 0.61 16
35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16
36 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16
37 H 0.09 0.99 8.10 -51.93 -0.42 0.57 16
38 H 0.38 1.96 9.12 45.56 0.42 2.38 16
39 H 0.09 1.02 7.90 -51.93 -0.41 0.61 16
40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16
LS Contribution 336.48 15.07 5.07 5.07
Total: -1.00 -32.26 336.48 -8.61 -40.87
By element:
Atomic # 1 Polarization: 12.00 SS G_CDS: -5.31 Total: 6.69 kcal
Atomic # 6 Polarization: -8.49 SS G_CDS: -0.53 Total: -9.01 kcal
Atomic # 7 Polarization: -61.98 SS G_CDS: 0.20 Total: -61.78 kcal
Atomic # 8 Polarization: -48.03 SS G_CDS: -2.36 Total: -50.39 kcal
Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal
Atomic # 16 Polarization: 53.98 SS G_CDS: -0.66 Total: 53.32 kcal
Total LS contribution 5.07 Total: 5.07 kcal
Total: -32.26 -8.61 -40.87 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001351422183.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -68.064 kcal
(2) G-P(sol) polarization free energy of solvation -32.262 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.326 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.610 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.872 kcal
(6) G-S(sol) free energy of system = (1) + (5) -108.936 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds