Wall clock time and date at job start Tue Mar 31 2020 02:44:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.08996 * 109.47090 * 2 1
4 4 C 1.50692 * 109.47195 * 120.00578 * 2 1 3
5 5 H 1.07997 * 120.00431 * 119.99566 * 4 2 1
6 6 C 1.37880 * 120.00264 * 299.99882 * 4 2 1
7 7 N 1.31519 * 119.99521 * 0.02562 * 6 4 2
8 8 Si 1.86795 * 120.00410 * 180.02562 * 6 4 2
9 9 H 1.48506 * 109.47062 * 359.97438 * 8 6 4
10 10 H 1.48498 * 109.47299 * 119.99937 * 8 6 4
11 11 H 1.48505 * 109.47309 * 240.00124 * 8 6 4
12 12 N 1.46499 * 109.46706 * 240.00297 * 2 1 3
13 13 C 1.46494 * 120.00584 * 300.00135 * 12 2 1
14 14 S 1.65606 * 119.99862 * 119.99957 * 12 2 1
15 15 O 1.42102 * 106.40116 * 336.46139 * 14 12 2
16 16 O 1.42099 * 106.40321 * 203.53880 * 14 12 2
17 17 N 1.65601 * 107.21574 * 90.00037 * 14 12 2
18 18 C 1.46493 * 120.00102 * 64.99892 * 17 14 12
19 19 C 1.53003 * 109.47111 * 165.00117 * 18 17 14
20 20 H 1.08997 * 112.91098 * 43.75037 * 19 18 17
21 21 C 1.53781 * 113.61480 * 175.00222 * 19 18 17
22 22 C 1.53786 * 87.17350 * 139.93948 * 21 19 18
23 23 H 1.08993 * 113.61491 * 89.15923 * 22 21 19
24 24 O 1.42902 * 113.61284 * 220.06071 * 22 21 19
25 25 C 1.53782 * 113.61259 * 272.50057 * 19 18 17
26 26 H 1.09003 * 109.47249 * 59.99480 * 1 2 3
27 27 H 1.08996 * 109.47296 * 179.97438 * 1 2 3
28 28 H 1.09007 * 109.47068 * 299.99544 * 1 2 3
29 29 H 0.97003 * 119.99953 * 180.02562 * 7 6 4
30 30 H 1.09000 * 109.47099 * 270.00565 * 13 12 2
31 31 H 1.09006 * 109.47019 * 30.00089 * 13 12 2
32 32 H 1.08998 * 109.47719 * 149.99674 * 13 12 2
33 33 H 0.97003 * 120.00039 * 245.00491 * 17 14 12
34 34 H 1.08994 * 109.47006 * 45.00281 * 18 17 14
35 35 H 1.09002 * 109.47617 * 284.99736 * 18 17 14
36 36 H 1.09002 * 113.61445 * 254.52948 * 21 19 18
37 37 H 1.09002 * 113.61408 * 25.34678 * 21 19 18
38 38 H 0.96700 * 113.99699 * 179.97438 * 24 22 21
39 39 H 1.08997 * 113.61668 * 334.56352 * 25 19 18
40 40 H 1.08994 * 113.61387 * 105.47087 * 25 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0324 -0.7105 1.2303
5 1 2.6532 -1.5886 1.1312
6 6 1.6993 -0.2396 2.4827
7 7 0.9428 0.8294 2.6034
8 14 2.3226 -1.1198 4.0078
9 1 3.1475 -2.2867 3.6035
10 1 3.1473 -0.1862 4.8160
11 1 1.1679 -1.5870 4.8164
12 7 2.0183 -0.6906 -1.1962
13 6 1.6643 -2.0930 -1.4282
14 16 2.9703 0.1143 -2.2863
15 8 2.6903 1.4974 -2.1192
16 8 2.8226 -0.5643 -3.5260
17 7 4.5437 -0.1042 -1.8182
18 6 5.1356 -1.4440 -1.8418
19 6 6.6576 -1.3311 -1.7338
20 1 6.9773 -0.6102 -0.9814
21 6 7.3701 -2.6897 -1.6269
22 6 8.4460 -2.1133 -2.5624
23 1 9.2554 -1.6066 -2.0370
24 8 8.9144 -3.0454 -3.5391
25 6 7.3603 -1.1579 -3.0907
26 1 -0.3634 0.5139 -0.8900
27 1 -0.3634 -1.0276 -0.0005
28 1 -0.3633 0.5138 0.8901
29 1 0.7088 1.1610 3.4845
30 1 2.4156 -2.7376 -0.9719
31 1 0.6903 -2.3001 -0.9849
32 1 1.6236 -2.2850 -2.5004
33 1 5.0733 0.6550 -1.5282
34 1 4.8735 -1.9405 -2.7759
35 1 4.7539 -2.0248 -1.0020
36 1 7.7367 -2.9129 -0.6250
37 1 6.8067 -3.5138 -2.0648
38 1 9.5910 -2.6885 -4.1306
39 1 6.7950 -1.5630 -3.9300
40 1 7.7190 -0.1445 -3.2703
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001351422183.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:44:03
Heat of formation + Delta-G solvation = -134.965063 kcal
Electronic energy + Delta-G solvation = -22677.011029 eV
Core-core repulsion = 19232.187490 eV
Total energy + Delta-G solvation = -3444.823539 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 292.129 amu
Computer time = 0.47 seconds
Orbital eigenvalues (eV)
-40.35621 -38.32076 -37.88332 -36.89597 -36.72247 -34.81851 -34.49207 -30.90039
-28.14102 -27.28309 -26.94396 -26.61251 -23.31224 -22.58112 -20.85453 -20.00046
-18.77804 -18.62553 -18.24523 -18.09102 -17.32006 -16.72807 -16.32970 -15.99441
-15.42524 -15.19897 -14.85446 -14.79200 -14.60549 -13.71470 -13.63119 -13.51792
-13.44306 -13.34675 -13.21104 -13.14266 -12.91941 -12.75587 -12.61153 -12.46967
-12.23065 -12.15246 -12.12227 -11.88796 -11.71418 -11.29626 -11.14086 -10.68644
-10.49106 -10.31110 -9.63735 -8.07429 -6.22110 -0.26026 1.45376 1.48476
1.58316 2.03226 2.47203 2.63219 3.21150 3.31420 3.48970 3.58760
3.68178 3.89425 4.00860 4.12372 4.28113 4.41858 4.62304 4.74304
4.75114 4.83483 4.87804 4.89669 4.92612 4.97555 5.05369 5.12558
5.17890 5.18724 5.28084 5.50857 5.62767 5.72228 5.86902 6.07791
6.21302 6.31498 6.87635 6.95455 7.47745 8.97299
Molecular weight = 292.13amu
Principal moments of inertia in cm(-1)
A = 0.015615 B = 0.005393 C = 0.004393
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1792.734912 B = 5191.129528 C = 6371.795519
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C 0.272 3.728
3 H 0.025 0.975
4 C -0.525 4.525
5 H 0.069 0.931
6 C 0.015 3.985
7 N -0.919 5.919
8 Si 0.959 3.041
9 H -0.263 1.263
10 H -0.286 1.286
11 H -0.285 1.285
12 N -0.997 5.997
13 C 0.093 3.907
14 S 2.799 3.201
15 O -1.020 7.020
16 O -1.009 7.009
17 N -1.116 6.116
18 C 0.129 3.871
19 C -0.113 4.113
20 H 0.111 0.889
21 C -0.125 4.125
22 C 0.081 3.919
23 H 0.103 0.897
24 O -0.580 6.580
25 C -0.165 4.165
26 H 0.019 0.981
27 H 0.045 0.955
28 H 0.070 0.930
29 H 0.262 0.738
30 H 0.059 0.941
31 H 0.073 0.927
32 H 0.075 0.925
33 H 0.420 0.580
34 H 0.073 0.927
35 H 0.067 0.933
36 H 0.086 0.914
37 H 0.084 0.916
38 H 0.394 0.606
39 H 0.078 0.922
40 H 0.080 0.920
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.715 -6.465 -7.831 17.065
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C 0.168 3.832
3 H 0.043 0.957
4 C -0.565 4.565
5 H 0.087 0.913
6 C -0.185 4.185
7 N -0.559 5.559
8 Si 0.786 3.214
9 H -0.187 1.187
10 H -0.212 1.212
11 H -0.211 1.211
12 N -0.838 5.838
13 C -0.053 4.053
14 S 2.808 3.192
15 O -1.004 7.004
16 O -0.992 6.992
17 N -0.878 5.878
18 C 0.003 3.997
19 C -0.133 4.133
20 H 0.129 0.871
21 C -0.163 4.163
22 C 0.022 3.978
23 H 0.120 0.880
24 O -0.388 6.388
25 C -0.203 4.203
26 H 0.038 0.962
27 H 0.064 0.936
28 H 0.088 0.912
29 H 0.072 0.928
30 H 0.077 0.923
31 H 0.092 0.908
32 H 0.094 0.906
33 H 0.255 0.745
34 H 0.091 0.909
35 H 0.086 0.914
36 H 0.105 0.895
37 H 0.103 0.897
38 H 0.244 0.756
39 H 0.097 0.903
40 H 0.098 0.902
Dipole moment (debyes) X Y Z Total
from point charges 12.789 -6.423 -8.254 16.521
hybrid contribution 0.554 0.469 1.141 1.352
sum 13.343 -5.954 -7.113 16.251
Atomic orbital electron populations
1.21965 0.98022 1.00103 0.99971 1.18399 0.91892 0.91417 0.81488
0.95693 1.21650 1.31323 1.12929 0.90553 0.91277 1.25696 0.95267
0.95628 1.01867 1.70031 1.37563 1.24098 1.24185 0.85489 0.77984
0.78645 0.79330 1.18666 1.21179 1.21074 1.57543 1.65385 1.22431
1.38470 1.21470 1.02330 0.80452 1.01012 1.01096 0.73217 0.71928
0.72999 1.93538 1.84690 1.34863 1.87301 1.93507 1.86628 1.76364
1.42745 1.55652 1.30736 1.16320 1.85127 1.21346 0.94279 0.82232
1.01834 1.22527 0.92214 0.99310 0.99224 0.87095 1.23098 0.96407
0.96646 1.00189 1.23400 0.94445 0.89986 0.89964 0.87954 1.86488
1.61904 1.41855 1.48553 1.23806 0.98539 1.00992 0.96989 0.96238
0.93565 0.91163 0.92823 0.92279 0.90792 0.90597 0.74466 0.90851
0.91436 0.89549 0.89700 0.75607 0.90294 0.90173
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -6.75 8.95 71.98 0.64 -6.10 16
2 C 0.27 13.28 2.62 44.24 0.12 13.40 16
3 H 0.03 1.39 6.91 -2.39 -0.02 1.38 16
4 C -0.53 -26.36 8.37 25.60 0.21 -26.14 16
5 H 0.07 3.31 7.65 -2.91 -0.02 3.29 16
6 C 0.01 0.77 5.30 84.65 0.45 1.22 16
7 N -0.92 -50.78 11.32 21.45 0.24 -50.53 16
8 Si 0.96 40.94 29.54 68.60 2.03 42.97 16
9 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16
10 H -0.29 -12.17 7.11 99.48 0.71 -11.47 16
11 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16
12 N -1.00 -40.31 3.12 -520.47 -1.62 -41.93 16
13 C 0.09 3.13 9.90 127.77 1.26 4.40 16
14 S 2.80 107.57 6.14 -56.49 -0.35 107.22 16
15 O -1.02 -46.90 16.70 -128.00 -2.14 -49.04 16
16 O -1.01 -40.09 16.21 -128.00 -2.07 -42.16 16
17 N -1.12 -33.37 6.05 -187.50 -1.14 -34.51 16
18 C 0.13 3.25 6.08 86.38 0.53 3.78 16
19 C -0.11 -2.19 3.79 -10.27 -0.04 -2.23 16
20 H 0.11 1.94 8.12 -2.39 -0.02 1.92 16
21 C -0.13 -2.24 7.47 31.12 0.23 -2.01 16
22 C 0.08 1.26 5.22 31.18 0.16 1.43 16
23 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16
24 O -0.58 -9.88 13.67 -148.98 -2.04 -11.92 16
25 C -0.17 -2.94 7.47 31.18 0.23 -2.71 16
26 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16
27 H 0.05 2.03 6.66 -2.39 -0.02 2.01 16
28 H 0.07 3.70 6.07 -2.38 -0.01 3.68 16
29 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16
30 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16
31 H 0.07 2.50 6.43 -2.38 -0.02 2.49 16
32 H 0.08 2.33 7.02 -2.39 -0.02 2.31 16
33 H 0.42 11.17 8.64 -96.74 -0.84 10.33 16
34 H 0.07 1.87 7.45 -2.39 -0.02 1.85 16
35 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16
36 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16
37 H 0.08 1.67 8.10 -2.39 -0.02 1.65 16
38 H 0.39 3.19 9.12 -74.06 -0.68 2.51 16
39 H 0.08 1.63 7.90 -2.39 -0.02 1.61 16
40 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16
Total: -1.00 -67.79 336.48 -3.74 -71.53
By element:
Atomic # 1 Polarization: 23.80 SS G_CDS: -0.45 Total: 23.34 kcal
Atomic # 6 Polarization: -18.78 SS G_CDS: 3.80 Total: -14.97 kcal
Atomic # 7 Polarization: -124.45 SS G_CDS: -2.52 Total: -126.97 kcal
Atomic # 8 Polarization: -96.87 SS G_CDS: -6.25 Total: -103.12 kcal
Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal
Atomic # 16 Polarization: 107.57 SS G_CDS: -0.35 Total: 107.22 kcal
Total: -67.79 -3.74 -71.53 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001351422183.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -63.434 kcal
(2) G-P(sol) polarization free energy of solvation -67.793 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.227 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.738 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.531 kcal
(6) G-S(sol) free energy of system = (1) + (5) -134.965 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds