Wall clock time and date at job start Tue Mar 31 2020 03:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 S 1.65608 * 120.00055 * 2 1 4 4 O 1.42101 * 104.27643 * 308.93146 * 3 2 1 5 5 O 1.42093 * 104.27610 * 181.07078 * 3 2 1 6 6 C 1.81399 * 104.44808 * 64.99817 * 3 2 1 7 7 C 1.53123 * 109.57528 * 60.30010 * 6 3 2 8 8 C 1.53034 * 109.27992 * 177.60095 * 7 6 3 9 9 N 1.46847 * 109.51345 * 300.80438 * 8 7 6 10 10 C 1.46895 * 110.99982 * 185.84805 * 9 8 7 11 11 C 1.53000 * 109.47597 * 189.99795 * 10 9 8 12 12 H 1.09001 * 109.46741 * 59.99127 * 11 10 9 13 13 O 1.42904 * 109.46882 * 300.00272 * 11 10 9 14 14 C 1.50689 * 109.47835 * 179.97438 * 11 10 9 15 15 H 1.08007 * 119.99884 * 359.97438 * 14 11 10 16 16 C 1.37875 * 120.00459 * 179.97438 * 14 11 10 17 17 N 1.31515 * 119.99818 * 359.97438 * 16 14 11 18 18 Si 1.86801 * 120.00184 * 179.97438 * 16 14 11 19 19 H 1.48503 * 109.46884 * 90.00141 * 18 16 14 20 20 H 1.48501 * 109.47279 * 209.99792 * 18 16 14 21 21 H 1.48494 * 109.47076 * 330.00235 * 18 16 14 22 22 C 1.46843 * 111.20124 * 61.74903 * 9 8 7 23 23 C 1.53042 * 109.52278 * 298.25596 * 22 9 8 24 24 H 1.09005 * 109.46895 * 60.00039 * 1 2 3 25 25 H 1.08990 * 109.46947 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46951 * 300.00306 * 1 2 3 27 27 H 0.96993 * 120.00377 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.52541 * 300.13059 * 6 3 2 29 29 H 1.08997 * 109.51083 * 57.64689 * 7 6 3 30 30 H 1.08998 * 109.48980 * 297.53620 * 7 6 3 31 31 H 1.09002 * 109.46271 * 180.79158 * 8 7 6 32 32 H 1.08994 * 109.46242 * 60.81457 * 8 7 6 33 33 H 1.08997 * 109.47358 * 309.99752 * 10 9 8 34 34 H 1.09001 * 109.47788 * 69.99563 * 10 9 8 35 35 H 0.96706 * 113.99859 * 299.99515 * 13 11 10 36 36 H 0.97004 * 120.00036 * 179.97438 * 17 16 14 37 37 H 1.08993 * 109.46313 * 58.27251 * 22 9 8 38 38 H 1.09000 * 109.46480 * 178.25361 * 22 9 8 39 39 H 1.08997 * 109.50758 * 179.11703 * 23 22 9 40 40 H 1.08998 * 109.50897 * 299.20258 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2931 1.4342 0.0000 4 8 1.7188 2.1704 -1.0713 5 8 3.6606 1.0492 -0.0257 6 6 1.8764 2.1974 1.5920 7 6 2.3308 1.2836 2.7336 8 6 2.0303 1.9604 4.0728 9 7 2.7356 3.2466 4.1415 10 6 2.5826 3.8608 5.4671 11 6 3.1103 5.2963 5.4281 12 1 2.5458 5.8711 4.6940 13 8 4.4923 5.2861 5.0645 14 6 2.9529 5.9266 6.7878 15 1 2.5193 5.3600 7.5987 16 6 3.3622 7.2265 6.9968 17 7 3.8906 7.9162 6.0096 18 14 3.1663 8.0080 8.6821 19 1 4.3871 7.7563 9.4894 20 1 2.9672 9.4716 8.5290 21 1 1.9890 7.4173 9.3678 22 6 2.2817 4.1583 3.0836 23 6 2.5894 3.5469 1.7147 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.9500 -0.8400 -0.0004 28 1 0.7985 2.3480 1.6528 29 1 3.4022 1.1018 2.6499 30 1 1.7948 0.3362 2.6763 31 1 2.3655 1.3185 4.8875 32 1 0.9572 2.1295 4.1616 33 1 1.5286 3.8686 5.7445 34 1 3.1472 3.2860 6.2012 35 1 5.0560 4.7914 5.6749 36 1 4.1783 8.8309 6.1565 37 1 1.2075 4.3171 3.1772 38 1 2.7996 5.1126 3.1796 39 1 2.2383 4.2166 0.9297 40 1 3.6650 3.4012 1.6146 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001654578099.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:47 Heat of formation + Delta-G solvation = -150.329870 kcal Electronic energy + Delta-G solvation = -22536.781368 eV Core-core repulsion = 19091.291561 eV Total energy + Delta-G solvation = -3445.489807 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.129 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.19075 -38.23548 -37.54335 -37.07352 -35.87960 -34.49171 -34.15808 -31.93551 -30.06280 -27.14210 -26.77767 -24.99102 -24.23779 -22.08986 -21.06233 -20.16128 -19.16066 -18.69445 -17.88481 -17.20527 -16.68630 -16.64421 -16.28834 -16.08713 -15.67456 -15.48533 -15.17457 -14.85655 -14.69447 -14.28760 -14.14719 -13.74085 -13.44540 -13.25972 -13.16833 -13.14251 -13.05303 -12.81802 -12.72233 -12.51703 -12.47692 -12.25578 -12.06043 -11.90497 -11.74103 -11.22110 -10.86245 -10.65459 -10.36652 -10.04998 -9.12131 -8.13295 -6.38879 -0.76405 1.40727 1.41091 1.51642 1.79719 2.38444 2.74456 3.04401 3.12648 3.13628 3.38812 3.63468 3.96006 4.12113 4.25051 4.30014 4.30899 4.43019 4.49069 4.51495 4.63868 4.68455 4.71481 4.75780 4.87937 4.93715 4.96783 5.00070 5.04862 5.11943 5.23047 5.61297 5.77074 6.00842 6.16011 6.22032 6.34555 6.74394 7.35282 7.61180 8.90945 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.038777 B = 0.003471 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.903250 B = 8064.057632 C = 8295.801977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -1.113 6.113 3 S 2.630 3.370 4 O -0.994 6.994 5 O -0.990 6.990 6 C -0.573 4.573 7 C -0.094 4.094 8 C 0.056 3.944 9 N -0.541 5.541 10 C 0.048 3.952 11 C 0.228 3.772 12 H 0.028 0.972 13 O -0.571 6.571 14 C -0.589 4.589 15 H 0.059 0.941 16 C 0.026 3.974 17 N -0.899 5.899 18 Si 0.959 3.041 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.264 1.264 22 C 0.064 3.936 23 C -0.106 4.106 24 H 0.057 0.943 25 H 0.109 0.891 26 H 0.076 0.924 27 H 0.427 0.573 28 H 0.158 0.842 29 H 0.078 0.922 30 H 0.117 0.883 31 H 0.087 0.913 32 H 0.041 0.959 33 H 0.028 0.972 34 H 0.071 0.929 35 H 0.354 0.646 36 H 0.261 0.739 37 H 0.034 0.966 38 H 0.064 0.936 39 H 0.089 0.911 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.084 -18.399 -8.462 22.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.875 5.875 3 S 2.724 3.276 4 O -0.984 6.984 5 O -0.980 6.980 6 C -0.684 4.684 7 C -0.133 4.133 8 C -0.072 4.072 9 N -0.265 5.265 10 C -0.080 4.080 11 C 0.170 3.830 12 H 0.046 0.954 13 O -0.374 6.374 14 C -0.627 4.627 15 H 0.077 0.923 16 C -0.176 4.176 17 N -0.536 5.536 18 Si 0.784 3.216 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.189 1.189 22 C -0.065 4.065 23 C -0.146 4.146 24 H 0.076 0.924 25 H 0.127 0.873 26 H 0.095 0.905 27 H 0.263 0.737 28 H 0.176 0.824 29 H 0.096 0.904 30 H 0.135 0.865 31 H 0.105 0.895 32 H 0.059 0.941 33 H 0.046 0.954 34 H 0.090 0.910 35 H 0.198 0.802 36 H 0.070 0.930 37 H 0.052 0.948 38 H 0.082 0.918 39 H 0.107 0.893 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.335 -17.514 -9.853 21.755 hybrid contribution -0.730 0.521 2.006 2.198 sum -9.065 -16.992 -7.846 20.796 Atomic orbital electron populations 1.21785 0.77270 1.06141 1.02379 1.55048 1.16777 1.23649 1.91997 1.04324 0.72870 0.74055 0.76311 1.93542 1.79355 1.73700 1.51769 1.93545 1.35037 1.81740 1.87687 1.30386 1.11600 1.06805 1.19596 1.21442 1.03146 0.97330 0.91371 1.22135 0.96296 0.90696 0.98098 1.61879 1.57470 1.04268 1.02931 1.22676 0.98529 0.97025 0.89803 1.19332 0.80394 0.89690 0.93542 0.95390 1.86495 1.20126 1.77393 1.53420 1.22068 1.43616 0.98976 0.98041 0.92267 1.25879 0.93698 0.97677 1.00361 1.70216 1.40021 1.10113 1.33271 0.85571 0.78837 0.77369 0.79848 1.19886 1.21049 1.18864 1.21936 0.97595 0.96382 0.90617 1.21422 1.00924 0.93809 0.98406 0.92432 0.87282 0.90500 0.73700 0.82425 0.90356 0.86465 0.89462 0.94121 0.95374 0.91043 0.80208 0.93047 0.94823 0.91804 0.89261 0.90732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.55 11.03 127.77 1.41 1.96 16 2 N -1.11 -13.75 5.86 -206.54 -1.21 -14.96 16 3 S 2.63 55.99 4.90 -56.49 -0.28 55.71 16 4 O -0.99 -27.92 17.73 -127.65 -2.26 -30.18 16 5 O -0.99 -28.18 17.90 -127.65 -2.28 -30.46 16 6 C -0.57 -11.40 2.77 30.68 0.08 -11.32 16 7 C -0.09 -1.78 5.25 30.65 0.16 -1.62 16 8 C 0.06 1.36 5.42 86.32 0.47 1.83 16 9 N -0.54 -18.30 4.67 -896.40 -4.19 -22.49 16 10 C 0.05 1.87 4.87 86.30 0.42 2.29 16 11 C 0.23 11.41 2.12 29.84 0.06 11.47 16 12 H 0.03 1.57 6.21 -2.39 -0.01 1.56 16 13 O -0.57 -29.74 12.40 -148.98 -1.85 -31.59 16 14 C -0.59 -31.83 8.76 25.60 0.22 -31.61 16 15 H 0.06 3.07 7.74 -2.91 -0.02 3.05 16 16 C 0.03 1.46 5.40 84.65 0.46 1.92 16 17 N -0.90 -53.59 12.84 21.45 0.28 -53.31 16 18 Si 0.96 42.93 29.54 68.60 2.03 44.95 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 21 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 22 C 0.06 2.19 4.85 86.33 0.42 2.61 16 23 C -0.11 -2.96 5.39 30.65 0.17 -2.79 16 24 H 0.06 0.59 8.04 -2.38 -0.02 0.57 16 25 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 26 H 0.08 0.35 7.72 -2.39 -0.02 0.34 16 27 H 0.43 3.78 8.92 -96.75 -0.86 2.92 16 28 H 0.16 2.27 7.77 -2.39 -0.02 2.25 16 29 H 0.08 1.71 8.04 -2.39 -0.02 1.69 16 30 H 0.12 1.24 8.02 -2.39 -0.02 1.22 16 31 H 0.09 1.93 8.12 -2.39 -0.02 1.91 16 32 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.03 1.08 8.08 -2.39 -0.02 1.06 16 34 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 35 H 0.35 16.62 9.04 -74.05 -0.67 15.95 16 36 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 37 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.06 2.72 5.66 -2.39 -0.01 2.71 16 39 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -76.35 333.54 -6.38 -82.73 By element: Atomic # 1 Polarization: 25.34 SS G_CDS: -0.48 Total: 24.85 kcal Atomic # 6 Polarization: -29.13 SS G_CDS: 3.87 Total: -25.26 kcal Atomic # 7 Polarization: -85.64 SS G_CDS: -5.12 Total: -90.76 kcal Atomic # 8 Polarization: -85.83 SS G_CDS: -6.40 Total: -92.23 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.95 kcal Atomic # 16 Polarization: 55.99 SS G_CDS: -0.28 Total: 55.71 kcal Total: -76.35 -6.38 -82.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654578099.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.598 kcal (2) G-P(sol) polarization free energy of solvation -76.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds