Wall clock time and date at job start Tue Mar 31 2020 02:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.28384 * 119.10306 * 2 1 4 4 C 1.31405 * 122.26645 * 180.29847 * 3 2 1 5 5 C 1.47888 * 119.89286 * 179.70319 * 4 3 2 6 6 O 1.21551 * 120.00326 * 179.72910 * 5 4 3 7 7 N 1.34777 * 120.00051 * 359.72778 * 5 4 3 8 8 C 1.46504 * 120.00177 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.47175 * 174.31624 * 8 7 5 10 10 N 1.46502 * 115.55285 * 324.36290 * 9 8 7 11 11 C 1.36941 * 119.99413 * 294.58476 * 10 9 8 12 12 H 1.07993 * 120.00305 * 352.94824 * 11 10 9 13 13 C 1.38817 * 119.99249 * 172.95401 * 11 10 9 14 14 N 1.31621 * 119.99252 * 179.97438 * 13 11 10 15 15 Si 1.86792 * 120.00423 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.46869 * 90.00133 * 15 13 11 17 17 H 1.48503 * 109.47309 * 209.99998 * 15 13 11 18 18 H 1.48497 * 109.47113 * 330.00698 * 15 13 11 19 19 C 1.53004 * 117.49647 * 110.03319 * 9 8 7 20 20 C 1.53000 * 117.49802 * 178.69393 * 9 8 7 21 21 C 1.41575 * 120.21411 * 359.42998 * 4 3 2 22 22 C 1.36331 * 118.23656 * 0.27308 * 21 4 3 23 23 C 1.34614 * 119.10246 * 179.72914 * 2 1 3 24 24 O 1.21986 * 120.21946 * 359.97438 * 23 2 1 25 25 H 1.08996 * 109.46880 * 270.27322 * 1 2 3 26 26 H 1.08996 * 109.46799 * 30.27145 * 1 2 3 27 27 H 1.08997 * 109.47295 * 150.27353 * 1 2 3 28 28 H 0.97000 * 120.00449 * 0.02562 * 7 5 4 29 29 H 1.09001 * 109.46836 * 54.31796 * 8 7 5 30 30 H 1.09002 * 109.46934 * 294.32257 * 8 7 5 31 31 H 0.96990 * 119.99884 * 114.85612 * 10 9 8 32 32 H 0.97005 * 119.99339 * 179.97438 * 14 13 11 33 33 H 1.09000 * 117.49275 * 214.99909 * 19 9 8 34 34 H 1.08994 * 117.49834 * 0.02562 * 19 9 8 35 35 H 1.08999 * 117.49868 * 359.97358 * 20 9 8 36 36 H 1.08998 * 117.50106 * 144.97761 * 20 9 8 37 37 H 1.08002 * 120.88238 * 180.25096 * 21 4 3 38 38 H 1.07996 * 121.03525 * 180.02562 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.0895 1.1217 0.0000 4 6 3.4015 1.1943 -0.0058 5 6 4.0666 2.5151 -0.0121 6 8 5.2802 2.5846 -0.0125 7 7 3.3273 3.6419 -0.0175 8 6 3.9861 4.9504 -0.0243 9 6 2.9334 6.0508 -0.1723 10 7 1.7927 5.7226 -1.0310 11 6 1.9821 5.5152 -2.3713 12 1 2.9480 5.7040 -2.8157 13 6 0.9323 5.0622 -3.1585 14 7 1.1142 4.8633 -4.4468 15 14 -0.7383 4.7350 -2.3896 16 1 -1.5587 5.9717 -2.4435 17 1 -1.4248 3.6524 -3.1392 18 1 -0.5594 4.3211 -0.9747 19 6 2.6700 6.9442 1.0416 20 6 3.4220 7.5007 -0.1701 21 6 4.1804 0.0121 -0.0002 22 6 3.5323 -1.1873 0.0056 23 6 2.1198 -1.1762 0.0056 24 8 1.4974 -2.2253 0.0110 25 1 -0.3633 0.0049 1.0276 26 1 -0.3633 0.8875 -0.5180 27 1 -0.3634 -0.8924 -0.5096 28 1 2.3588 3.5867 -0.0168 29 1 4.6846 5.0011 -0.8596 30 1 4.5280 5.0893 0.9113 31 1 0.9029 5.6562 -0.6508 32 1 0.3807 4.5465 -4.9969 33 1 1.6479 7.2878 1.2011 34 1 3.2469 6.7483 1.9453 35 1 4.4932 7.6707 -0.0629 36 1 2.8949 8.2103 -0.8078 37 1 5.2594 0.0591 -0.0008 38 1 4.0818 -2.1171 0.0104 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699672451.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:35 Heat of formation + Delta-G solvation = 47.118292 kcal Electronic energy + Delta-G solvation = -23474.795431 eV Core-core repulsion = 19934.716418 eV Total energy + Delta-G solvation = -3540.079013 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.17297 -39.47976 -37.91984 -37.53564 -34.97599 -33.87634 -33.15425 -31.61314 -30.42609 -28.68151 -26.80622 -25.02996 -23.73503 -23.59754 -22.02428 -21.01190 -19.37948 -18.50960 -18.02306 -17.70375 -16.88517 -16.79248 -16.08659 -15.84614 -15.04935 -14.81490 -14.31878 -14.26535 -13.94931 -13.61334 -13.54027 -13.11784 -12.95430 -12.79263 -12.75068 -12.41415 -12.27461 -11.67322 -11.24041 -11.13180 -11.06160 -10.57368 -10.52432 -10.40203 -10.10978 -9.79860 -9.70126 -9.51374 -8.97767 -8.76871 -8.51800 -7.46754 -5.88991 -3.28688 0.34952 1.08783 2.01333 2.84187 3.22773 3.26281 3.27699 3.34011 3.57780 3.87917 4.28197 4.45024 4.54514 4.64811 4.85596 4.90118 5.07185 5.11410 5.12402 5.36310 5.41201 5.43117 5.44628 5.54563 5.73747 5.74053 5.88168 5.97469 6.05847 6.19708 6.32065 6.41367 6.63237 6.78374 7.37910 7.74695 7.88064 7.96009 8.28937 8.42096 9.05457 9.76388 9.94031 11.28448 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.013336 B = 0.006064 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.031576 B = 4616.411211 C = 5881.629191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.336 5.336 3 N -0.175 5.175 4 C 0.024 3.976 5 C 0.584 3.416 6 O -0.542 6.542 7 N -0.678 5.678 8 C 0.151 3.849 9 C 0.131 3.869 10 N -0.713 5.713 11 C -0.242 4.242 12 H 0.092 0.908 13 C 0.011 3.989 14 N -0.926 5.926 15 Si 0.876 3.124 16 H -0.284 1.284 17 H -0.291 1.291 18 H -0.273 1.273 19 C -0.188 4.188 20 C -0.183 4.183 21 C -0.026 4.026 22 C -0.197 4.197 23 C 0.479 3.521 24 O -0.533 6.533 25 H 0.084 0.916 26 H 0.100 0.900 27 H 0.102 0.898 28 H 0.414 0.586 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.365 0.635 32 H 0.260 0.740 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.164 0.836 38 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.249 -5.591 12.617 13.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.157 5.157 3 N -0.005 5.005 4 C -0.148 4.148 5 C 0.366 3.634 6 O -0.418 6.418 7 N -0.328 5.328 8 C 0.025 3.975 9 C 0.037 3.963 10 N -0.354 5.354 11 C -0.372 4.372 12 H 0.110 0.890 13 C -0.185 4.185 14 N -0.573 5.573 15 Si 0.706 3.294 16 H -0.211 1.211 17 H -0.217 1.217 18 H -0.199 1.199 19 C -0.226 4.226 20 C -0.224 4.224 21 C -0.050 4.050 22 C -0.227 4.227 23 C 0.279 3.721 24 O -0.411 6.411 25 H 0.103 0.897 26 H 0.119 0.881 27 H 0.121 0.879 28 H 0.251 0.749 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.199 0.801 32 H 0.071 0.929 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.106 0.894 36 H 0.116 0.884 37 H 0.182 0.818 38 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 2.000 -5.681 12.350 13.740 hybrid contribution -1.247 -0.729 0.205 1.459 sum 0.753 -6.410 12.555 14.116 Atomic orbital electron populations 1.22287 0.73493 1.06057 1.04662 1.46714 1.09975 1.02626 1.56403 1.71180 1.11369 1.12342 1.05619 1.21878 0.88050 0.96577 1.08259 1.17122 0.86269 0.82287 0.77676 1.90782 1.12637 1.86469 1.51959 1.45610 1.11557 1.04769 1.70855 1.21183 0.94328 0.80832 1.01162 1.20112 0.91853 0.89550 0.94756 1.42115 1.02905 1.84800 1.05599 1.18951 0.99046 1.37554 0.81620 0.89015 1.24686 0.97604 1.00769 0.95455 1.69695 1.31750 1.51489 1.04322 0.86686 0.85897 0.78122 0.78714 1.21097 1.21703 1.19880 1.23255 1.01595 1.05298 0.92448 1.23354 0.99458 0.99050 1.00496 1.22254 1.03086 0.90301 0.89357 1.22636 0.92616 1.00373 1.07058 1.18113 0.90185 0.83926 0.79919 1.90955 1.69347 1.29452 1.51375 0.89734 0.88117 0.87913 0.74861 0.90596 0.91705 0.80126 0.92949 0.89172 0.89031 0.89443 0.88422 0.81828 0.81462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.84 10.58 59.85 0.63 1.48 16 2 N -0.34 -4.74 3.62 -70.15 -0.25 -4.99 16 3 N -0.17 -2.64 10.11 33.42 0.34 -2.30 16 4 C 0.02 0.36 6.84 -82.83 -0.57 -0.21 16 5 C 0.58 9.86 7.81 -12.31 -0.10 9.76 16 6 O -0.54 -9.98 16.37 5.32 0.09 -9.89 16 7 N -0.68 -11.58 5.38 -61.23 -0.33 -11.91 16 8 C 0.15 2.51 5.70 -4.04 -0.02 2.48 16 9 C 0.13 2.24 2.45 -131.82 -0.32 1.91 16 10 N -0.71 -14.88 4.27 -47.23 -0.20 -15.08 16 11 C -0.24 -6.22 10.30 -15.06 -0.16 -6.38 16 12 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 13 C 0.01 0.31 5.50 -17.43 -0.10 0.21 16 14 N -0.93 -27.69 13.97 55.49 0.78 -26.92 16 15 Si 0.88 20.21 27.66 -169.99 -4.70 15.51 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.27 -5.67 6.63 56.52 0.37 -5.30 16 19 C -0.19 -2.61 10.11 -26.69 -0.27 -2.88 16 20 C -0.18 -2.82 10.18 -26.69 -0.27 -3.09 16 21 C -0.03 -0.33 9.67 -39.00 -0.38 -0.70 16 22 C -0.20 -2.36 10.11 -39.12 -0.40 -2.76 16 23 C 0.48 6.97 7.47 -15.18 -0.11 6.86 16 24 O -0.53 -8.87 16.62 4.93 0.08 -8.78 16 25 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.10 1.11 7.36 -51.93 -0.38 0.72 16 28 H 0.41 7.25 7.12 -40.82 -0.29 6.96 16 29 H 0.08 1.40 8.13 -51.93 -0.42 0.97 16 30 H 0.06 0.94 7.91 -51.93 -0.41 0.52 16 31 H 0.36 7.47 6.00 -40.82 -0.24 7.22 16 32 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 33 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.09 1.07 8.06 -51.93 -0.42 0.65 16 35 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 37 H 0.16 1.69 7.72 -52.49 -0.41 1.29 16 38 H 0.17 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 332.99 15.07 5.02 5.02 Total: -1.00 -32.16 332.99 -5.94 -38.09 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -4.69 Total: 14.57 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: -2.05 Total: 6.68 kcal Atomic # 7 Polarization: -61.52 SS G_CDS: 0.33 Total: -61.20 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: 0.17 Total: -18.67 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.70 Total: 15.51 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.16 -5.94 -38.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699672451.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.210 kcal (2) G-P(sol) polarization free energy of solvation -32.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds