Wall clock time and date at job start Tue Mar 31 2020 02:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.28384 * 119.10306 * 2 1 4 4 C 1.31405 * 122.26645 * 180.29847 * 3 2 1 5 5 C 1.47888 * 119.89286 * 179.70319 * 4 3 2 6 6 O 1.21551 * 120.00326 * 179.72910 * 5 4 3 7 7 N 1.34777 * 120.00051 * 359.72778 * 5 4 3 8 8 C 1.46504 * 120.00177 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.47175 * 174.31624 * 8 7 5 10 10 N 1.46502 * 115.55285 * 324.36290 * 9 8 7 11 11 C 1.36941 * 119.99413 * 294.58476 * 10 9 8 12 12 H 1.07993 * 120.00305 * 352.94824 * 11 10 9 13 13 C 1.38817 * 119.99249 * 172.95401 * 11 10 9 14 14 N 1.31621 * 119.99252 * 179.97438 * 13 11 10 15 15 Si 1.86792 * 120.00423 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.46869 * 90.00133 * 15 13 11 17 17 H 1.48503 * 109.47309 * 209.99998 * 15 13 11 18 18 H 1.48497 * 109.47113 * 330.00698 * 15 13 11 19 19 C 1.53004 * 117.49647 * 110.03319 * 9 8 7 20 20 C 1.53000 * 117.49802 * 178.69393 * 9 8 7 21 21 C 1.41575 * 120.21411 * 359.42998 * 4 3 2 22 22 C 1.36331 * 118.23656 * 0.27308 * 21 4 3 23 23 C 1.34614 * 119.10246 * 179.72914 * 2 1 3 24 24 O 1.21986 * 120.21946 * 359.97438 * 23 2 1 25 25 H 1.08996 * 109.46880 * 270.27322 * 1 2 3 26 26 H 1.08996 * 109.46799 * 30.27145 * 1 2 3 27 27 H 1.08997 * 109.47295 * 150.27353 * 1 2 3 28 28 H 0.97000 * 120.00449 * 0.02562 * 7 5 4 29 29 H 1.09001 * 109.46836 * 54.31796 * 8 7 5 30 30 H 1.09002 * 109.46934 * 294.32257 * 8 7 5 31 31 H 0.96990 * 119.99884 * 114.85612 * 10 9 8 32 32 H 0.97005 * 119.99339 * 179.97438 * 14 13 11 33 33 H 1.09000 * 117.49275 * 214.99909 * 19 9 8 34 34 H 1.08994 * 117.49834 * 0.02562 * 19 9 8 35 35 H 1.08999 * 117.49868 * 359.97358 * 20 9 8 36 36 H 1.08998 * 117.50106 * 144.97761 * 20 9 8 37 37 H 1.08002 * 120.88238 * 180.25096 * 21 4 3 38 38 H 1.07996 * 121.03525 * 180.02562 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.0895 1.1217 0.0000 4 6 3.4015 1.1943 -0.0058 5 6 4.0666 2.5151 -0.0121 6 8 5.2802 2.5846 -0.0125 7 7 3.3273 3.6419 -0.0175 8 6 3.9861 4.9504 -0.0243 9 6 2.9334 6.0508 -0.1723 10 7 1.7927 5.7226 -1.0310 11 6 1.9821 5.5152 -2.3713 12 1 2.9480 5.7040 -2.8157 13 6 0.9323 5.0622 -3.1585 14 7 1.1142 4.8633 -4.4468 15 14 -0.7383 4.7350 -2.3896 16 1 -1.5587 5.9717 -2.4435 17 1 -1.4248 3.6524 -3.1392 18 1 -0.5594 4.3211 -0.9747 19 6 2.6700 6.9442 1.0416 20 6 3.4220 7.5007 -0.1701 21 6 4.1804 0.0121 -0.0002 22 6 3.5323 -1.1873 0.0056 23 6 2.1198 -1.1762 0.0056 24 8 1.4974 -2.2253 0.0110 25 1 -0.3633 0.0049 1.0276 26 1 -0.3633 0.8875 -0.5180 27 1 -0.3634 -0.8924 -0.5096 28 1 2.3588 3.5867 -0.0168 29 1 4.6846 5.0011 -0.8596 30 1 4.5280 5.0893 0.9113 31 1 0.9029 5.6562 -0.6508 32 1 0.3807 4.5465 -4.9969 33 1 1.6479 7.2878 1.2011 34 1 3.2469 6.7483 1.9453 35 1 4.4932 7.6707 -0.0629 36 1 2.8949 8.2103 -0.8078 37 1 5.2594 0.0591 -0.0008 38 1 4.0818 -2.1171 0.0104 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699672451.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:34 Heat of formation + Delta-G solvation = 23.055837 kcal Electronic energy + Delta-G solvation = -23475.838857 eV Core-core repulsion = 19934.716418 eV Total energy + Delta-G solvation = -3541.122439 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.26499 -40.79800 -39.19040 -38.80651 -36.00817 -35.24243 -34.99925 -32.71202 -32.31644 -29.72412 -28.04138 -26.15496 -25.59169 -24.70358 -23.22448 -22.26287 -20.81279 -19.77837 -19.59731 -19.15189 -17.97076 -17.93760 -17.32951 -17.09527 -16.38703 -16.31554 -15.97372 -15.55159 -15.05892 -14.72451 -14.67645 -14.60136 -14.30545 -14.11963 -14.07059 -13.68027 -13.47407 -12.98882 -12.92182 -12.78710 -12.21975 -12.11714 -11.91605 -11.76139 -11.54676 -11.41151 -11.00733 -10.92552 -10.66370 -10.03719 -9.72415 -9.30603 -7.98363 -5.34870 -0.69296 -0.04602 0.98141 1.38760 1.42385 1.50251 1.64521 2.04724 2.40799 2.50690 2.77414 3.02587 3.35551 3.40088 3.53817 3.64416 3.72314 3.86423 4.18348 4.22785 4.26557 4.38061 4.48014 4.51887 4.59722 4.71271 4.81480 4.85882 4.90085 4.90940 5.02972 5.17859 5.41296 5.46002 5.85100 6.24032 6.27222 6.47679 6.78977 7.07832 7.10836 7.83466 8.03008 9.22742 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.013336 B = 0.006064 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.031576 B = 4616.411211 C = 5881.629191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.336 5.336 3 N -0.186 5.186 4 C 0.014 3.986 5 C 0.582 3.418 6 O -0.561 6.561 7 N -0.682 5.682 8 C 0.155 3.845 9 C 0.096 3.904 10 N -0.713 5.713 11 C -0.211 4.211 12 H 0.050 0.950 13 C -0.060 4.060 14 N -0.984 5.984 15 Si 0.944 3.056 16 H -0.286 1.286 17 H -0.303 1.303 18 H -0.233 1.233 19 C -0.150 4.150 20 C -0.186 4.186 21 C -0.024 4.024 22 C -0.185 4.185 23 C 0.469 3.531 24 O -0.559 6.559 25 H 0.108 0.892 26 H 0.101 0.899 27 H 0.105 0.895 28 H 0.412 0.588 29 H 0.048 0.952 30 H 0.093 0.907 31 H 0.370 0.630 32 H 0.254 0.746 33 H 0.098 0.902 34 H 0.124 0.876 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.185 0.815 38 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.990 -5.719 15.504 16.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.157 5.157 3 N -0.017 5.017 4 C -0.157 4.157 5 C 0.366 3.634 6 O -0.439 6.439 7 N -0.331 5.331 8 C 0.030 3.970 9 C 0.004 3.996 10 N -0.355 5.355 11 C -0.342 4.342 12 H 0.068 0.932 13 C -0.252 4.252 14 N -0.634 5.634 15 Si 0.771 3.229 16 H -0.212 1.212 17 H -0.230 1.230 18 H -0.157 1.157 19 C -0.187 4.187 20 C -0.226 4.226 21 C -0.047 4.047 22 C -0.215 4.215 23 C 0.269 3.731 24 O -0.440 6.440 25 H 0.126 0.874 26 H 0.120 0.880 27 H 0.123 0.877 28 H 0.249 0.751 29 H 0.066 0.934 30 H 0.111 0.889 31 H 0.205 0.795 32 H 0.063 0.937 33 H 0.116 0.884 34 H 0.142 0.858 35 H 0.125 0.875 36 H 0.098 0.902 37 H 0.202 0.798 38 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 1.766 -5.769 15.314 16.460 hybrid contribution -1.064 -0.600 -0.682 1.399 sum 0.702 -6.370 14.632 15.974 Atomic orbital electron populations 1.22530 0.72151 1.06217 1.06328 1.46926 1.10916 1.02336 1.55568 1.71143 1.11600 1.12816 1.06161 1.21810 0.88498 0.96518 1.08867 1.17362 0.86120 0.82872 0.77068 1.90764 1.13386 1.86893 1.52829 1.45665 1.11474 1.05103 1.70853 1.21164 0.93842 0.80587 1.01424 1.20402 0.91577 0.90421 0.97181 1.41954 1.04496 1.84910 1.04100 1.18739 0.96873 1.34788 0.83775 0.93194 1.25462 1.01994 1.01902 0.95801 1.69902 1.32845 1.54299 1.06368 0.85573 0.80270 0.77326 0.79710 1.21243 1.23008 1.15691 1.23370 1.02209 1.01028 0.92095 1.23367 1.00853 0.96860 1.01528 1.22384 1.03882 0.89320 0.89145 1.22905 0.91507 1.01441 1.05598 1.18523 0.91154 0.83651 0.79724 1.90943 1.70013 1.30166 1.52884 0.87364 0.88008 0.87670 0.75061 0.93394 0.88860 0.79544 0.93696 0.88397 0.85784 0.87488 0.90224 0.79820 0.78548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.40 10.58 127.77 1.35 2.75 16 2 N -0.34 -9.02 3.62 -494.05 -1.79 -10.81 16 3 N -0.19 -5.39 10.11 -48.19 -0.49 -5.87 16 4 C 0.01 0.40 6.84 42.59 0.29 0.69 16 5 C 0.58 19.13 7.81 86.80 0.68 19.80 16 6 O -0.56 -20.18 16.37 -3.87 -0.06 -20.24 16 7 N -0.68 -22.53 5.38 -465.92 -2.51 -25.04 16 8 C 0.16 4.96 5.70 86.38 0.49 5.45 16 9 C 0.10 3.10 2.45 3.60 0.01 3.11 16 10 N -0.71 -28.92 4.27 -303.34 -1.30 -30.21 16 11 C -0.21 -11.02 10.30 84.03 0.87 -10.16 16 12 H 0.05 2.99 8.06 -2.91 -0.02 2.97 16 13 C -0.06 -3.34 5.50 84.86 0.47 -2.88 16 14 N -0.98 -61.12 13.97 21.65 0.30 -60.82 16 15 Si 0.94 41.72 27.66 68.60 1.90 43.62 16 16 H -0.29 -12.63 7.11 99.48 0.71 -11.93 16 17 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 18 H -0.23 -8.66 6.63 99.48 0.66 -8.00 16 19 C -0.15 -3.54 10.11 30.62 0.31 -3.23 16 20 C -0.19 -5.33 10.18 30.62 0.31 -5.02 16 21 C -0.02 -0.55 9.67 22.65 0.22 -0.33 16 22 C -0.19 -4.04 10.11 22.57 0.23 -3.82 16 23 C 0.47 12.94 7.47 85.01 0.63 13.58 16 24 O -0.56 -17.95 16.62 -5.27 -0.09 -18.04 16 25 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.10 2.15 7.36 -2.39 -0.02 2.13 16 28 H 0.41 13.86 7.12 -92.71 -0.66 13.20 16 29 H 0.05 1.78 8.13 -2.39 -0.02 1.76 16 30 H 0.09 2.43 7.91 -2.39 -0.02 2.41 16 31 H 0.37 14.23 6.00 -92.72 -0.56 13.68 16 32 H 0.25 15.23 8.31 -92.70 -0.77 14.46 16 33 H 0.10 2.23 8.14 -2.39 -0.02 2.22 16 34 H 0.12 2.21 8.06 -2.39 -0.02 2.19 16 35 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 36 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 37 H 0.18 3.39 7.72 -2.91 -0.02 3.37 16 38 H 0.20 3.03 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -71.94 332.99 1.67 -70.27 By element: Atomic # 1 Polarization: 37.34 SS G_CDS: -0.16 Total: 37.19 kcal Atomic # 6 Polarization: 14.10 SS G_CDS: 5.86 Total: 19.96 kcal Atomic # 7 Polarization: -126.98 SS G_CDS: -5.78 Total: -132.76 kcal Atomic # 8 Polarization: -38.13 SS G_CDS: -0.15 Total: -38.28 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 1.90 Total: 43.62 kcal Total: -71.94 1.67 -70.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699672451.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.327 kcal (2) G-P(sol) polarization free energy of solvation -71.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds