Wall clock time and date at job start Tue Mar 31 2020 03:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46497 * 119.99979 * 2 1 4 4 C 1.53000 * 109.46947 * 90.00141 * 3 2 1 5 5 N 1.46505 * 109.47371 * 180.02562 * 4 3 2 6 6 C 1.36937 * 120.00282 * 180.02562 * 5 4 3 7 7 H 1.08004 * 119.99883 * 359.97438 * 6 5 4 8 8 C 1.38808 * 119.99837 * 179.97438 * 6 5 4 9 9 N 1.31617 * 120.00450 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99937 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47073 * 89.99750 * 10 8 6 12 12 H 1.48499 * 109.47423 * 210.00378 * 10 8 6 13 13 H 1.48503 * 109.46973 * 330.00221 * 10 8 6 14 14 C 1.34770 * 119.99718 * 180.02562 * 2 1 3 15 15 O 1.21506 * 120.00052 * 185.72301 * 14 2 1 16 16 C 1.48227 * 120.00294 * 5.72532 * 14 2 1 17 17 C 1.39624 * 119.65366 * 186.32180 * 16 14 2 18 18 C 1.38544 * 119.24419 * 179.73229 * 17 16 14 19 19 C 1.38589 * 118.55451 * 0.53055 * 18 17 16 20 20 C 1.39585 * 119.24294 * 359.72975 * 19 18 17 21 21 C 1.48229 * 119.65113 * 179.97438 * 20 19 18 22 22 N 1.34781 * 120.00047 * 180.02562 * 21 20 19 23 23 O 1.21500 * 120.00122 * 0.02562 * 21 20 19 24 24 N 1.32343 * 119.65425 * 6.59319 * 16 14 2 25 25 H 1.09004 * 109.46976 * 95.51511 * 1 2 3 26 26 H 1.08990 * 109.47105 * 215.51739 * 1 2 3 27 27 H 1.08999 * 109.46869 * 335.52104 * 1 2 3 28 28 H 1.08996 * 109.47043 * 209.99839 * 3 2 1 29 29 H 1.08999 * 109.47465 * 330.00380 * 3 2 1 30 30 H 1.09010 * 109.47137 * 299.99909 * 4 3 2 31 31 H 1.08998 * 109.47582 * 59.99889 * 4 3 2 32 32 H 0.96996 * 119.99475 * 359.97438 * 5 4 3 33 33 H 0.96995 * 120.00114 * 179.97438 * 9 8 6 34 34 H 1.07996 * 120.37817 * 359.97438 * 17 16 14 35 35 H 1.08004 * 120.72655 * 180.24221 * 18 17 16 36 36 H 1.07997 * 120.37792 * 179.75215 * 19 18 17 37 37 H 0.96997 * 119.99781 * 359.97438 * 22 21 20 38 38 H 0.97000 * 120.00087 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 1.4425 5 7 3.1845 2.9794 1.4426 6 6 3.5272 3.5721 2.6285 7 1 3.2576 3.1042 3.5639 8 6 4.2212 4.7742 2.6285 9 7 4.5504 5.3442 1.4888 10 14 4.6881 5.5832 4.2463 11 1 6.0244 5.0975 4.6751 12 1 4.7305 7.0569 4.0688 13 1 3.6806 5.2381 5.2812 14 6 2.1389 -1.1672 -0.0005 15 8 3.3494 -1.1699 0.1044 16 6 1.4033 -2.4476 -0.1292 17 6 2.0907 -3.6556 0.0037 18 6 1.3938 -4.8473 -0.1125 19 6 0.0328 -4.7965 -0.3691 20 6 -0.5912 -3.5544 -0.4961 21 6 -2.0463 -3.4895 -0.7712 22 7 -2.6560 -2.2939 -0.8957 23 8 -2.6895 -4.5141 -0.8844 24 7 0.1028 -2.4339 -0.3741 25 1 -0.3633 -0.0988 -1.0229 26 1 -0.3633 -0.8364 0.5970 27 1 -0.3633 0.9353 0.4258 28 1 3.1499 1.1384 -0.5138 29 1 1.6085 2.0284 -0.5138 30 1 1.5001 1.8407 1.9564 31 1 3.0416 0.9507 1.9564 32 1 3.4270 3.3994 0.6026 33 1 5.0350 6.1844 1.4888 34 1 3.1529 -3.6609 0.1988 35 1 1.9009 -5.7954 -0.0101 36 1 -0.5384 -5.7075 -0.4693 37 1 -2.1426 -1.4760 -0.8049 38 1 -3.6082 -2.2514 -1.0753 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753266215.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:17 Heat of formation + Delta-G solvation = -31.152057 kcal Electronic energy + Delta-G solvation = -22595.284967 eV Core-core repulsion = 19051.811897 eV Total energy + Delta-G solvation = -3543.473070 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.12492 -40.74340 -39.57512 -37.48410 -36.19103 -34.96991 -33.84755 -33.20915 -32.56970 -29.89370 -27.74641 -26.34410 -25.98124 -24.86183 -23.31730 -22.17381 -21.02511 -19.29419 -18.99416 -18.63529 -17.97823 -17.29268 -17.17688 -16.89487 -16.53928 -16.32021 -16.04249 -15.58790 -15.29363 -15.23729 -15.06567 -14.59092 -14.44495 -14.28984 -13.93887 -13.25205 -13.17099 -13.07491 -12.87592 -12.73869 -12.36471 -12.12648 -11.90145 -11.85408 -11.28127 -11.10494 -10.98220 -10.78081 -10.53531 -10.41440 -9.74165 -9.06626 -7.97880 -5.28572 -0.65678 -0.24111 1.34077 1.46601 1.49320 1.57493 1.76496 1.86042 2.23209 2.55315 2.73238 2.85047 3.35473 3.42596 3.75737 3.85958 3.89645 4.04751 4.08117 4.22506 4.28188 4.39188 4.42387 4.56232 4.79642 4.87896 4.96000 4.99053 5.05230 5.09536 5.34496 5.42314 5.50341 5.75726 6.09290 6.23735 6.28948 6.43289 6.95983 7.16899 7.30139 8.01429 8.27164 9.25434 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.028035 B = 0.002998 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.528666 B = 9335.766214 C = 9861.826733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.589 5.589 3 C 0.121 3.879 4 C 0.148 3.852 5 N -0.742 5.742 6 C -0.251 4.251 7 H 0.073 0.927 8 C -0.072 4.072 9 N -0.967 5.967 10 Si 0.977 3.023 11 H -0.288 1.288 12 H -0.290 1.290 13 H -0.268 1.268 14 C 0.558 3.442 15 O -0.567 6.567 16 C 0.066 3.934 17 C -0.090 4.090 18 C -0.067 4.067 19 C -0.085 4.085 20 C 0.052 3.948 21 C 0.582 3.418 22 N -0.819 5.819 23 O -0.567 6.567 24 N -0.422 5.422 25 H 0.080 0.920 26 H 0.092 0.908 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.102 0.898 30 H 0.030 0.970 31 H 0.001 0.999 32 H 0.376 0.624 33 H 0.254 0.746 34 H 0.155 0.845 35 H 0.190 0.810 36 H 0.169 0.831 37 H 0.417 0.583 38 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.700 -21.021 -6.390 26.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.319 5.319 3 C -0.002 4.002 4 C 0.021 3.979 5 N -0.386 5.386 6 C -0.383 4.383 7 H 0.091 0.909 8 C -0.264 4.264 9 N -0.617 5.617 10 Si 0.805 3.195 11 H -0.215 1.215 12 H -0.217 1.217 13 H -0.193 1.193 14 C 0.345 3.655 15 O -0.446 6.446 16 C -0.074 4.074 17 C -0.111 4.111 18 C -0.092 4.092 19 C -0.105 4.105 20 C -0.088 4.088 21 C 0.365 3.635 22 N -0.383 5.383 23 O -0.446 6.446 24 N -0.137 5.137 25 H 0.098 0.902 26 H 0.110 0.890 27 H 0.096 0.904 28 H 0.083 0.917 29 H 0.120 0.880 30 H 0.048 0.952 31 H 0.019 0.981 32 H 0.209 0.791 33 H 0.062 0.938 34 H 0.173 0.827 35 H 0.208 0.792 36 H 0.186 0.814 37 H 0.249 0.751 38 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -14.804 -20.887 -6.290 26.363 hybrid contribution 0.959 0.634 0.539 1.270 sum -13.845 -20.253 -5.751 25.198 Atomic orbital electron populations 1.22384 0.76272 1.03657 1.03714 1.47709 1.09098 1.04560 1.70568 1.21477 0.97520 0.84695 0.96511 1.20951 0.94374 0.86879 0.95724 1.42378 1.67627 1.22954 1.05623 1.19581 1.29122 1.02604 0.86954 0.90947 1.25604 1.01622 0.98810 1.00413 1.69807 1.45952 1.19906 1.26068 0.85100 0.78103 0.77193 0.79100 1.21513 1.21670 1.19284 1.18372 0.86323 0.83918 0.76862 1.90812 1.15024 1.87157 1.51573 1.20839 0.90111 0.93616 1.02809 1.22536 1.02854 0.91725 0.93956 1.22061 0.93124 0.99618 0.94446 1.22611 0.95692 0.99062 0.93177 1.21303 0.94603 0.90330 1.02589 1.17820 0.85598 0.84205 0.75896 1.43620 1.14306 1.08059 1.72269 1.90828 1.65841 1.35303 1.52642 1.67804 1.06936 1.30054 1.08911 0.90201 0.88978 0.90434 0.91655 0.87964 0.95232 0.98054 0.79136 0.93755 0.82684 0.79246 0.81368 0.75068 0.75000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.50 8.47 127.77 1.08 2.58 16 2 N -0.59 -16.38 2.87 -849.77 -2.44 -18.82 16 3 C 0.12 4.10 5.45 86.38 0.47 4.57 16 4 C 0.15 6.30 6.58 86.38 0.57 6.87 16 5 N -0.74 -39.16 5.60 -343.43 -1.92 -41.08 16 6 C -0.25 -14.48 9.99 84.03 0.84 -13.64 16 7 H 0.07 4.05 7.83 -2.91 -0.02 4.02 16 8 C -0.07 -4.20 5.50 84.86 0.47 -3.74 16 9 N -0.97 -59.69 13.06 21.65 0.28 -59.41 16 10 Si 0.98 46.62 29.55 68.60 2.03 48.65 16 11 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 12 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 13 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 14 C 0.56 16.86 7.64 86.90 0.66 17.52 16 15 O -0.57 -21.72 15.98 -3.74 -0.06 -21.78 16 16 C 0.07 1.49 6.56 42.06 0.28 1.77 16 17 C -0.09 -1.60 9.63 22.68 0.22 -1.38 16 18 C -0.07 -0.75 10.16 22.43 0.23 -0.52 16 19 C -0.08 -1.13 9.63 22.68 0.22 -0.91 16 20 C 0.05 0.88 6.75 42.05 0.28 1.17 16 21 C 0.58 9.97 8.09 86.90 0.70 10.67 16 22 N -0.82 -8.76 8.86 -175.34 -1.55 -10.32 16 23 O -0.57 -13.04 17.16 -3.72 -0.06 -13.10 16 24 N -0.42 -7.78 5.35 -174.09 -0.93 -8.72 16 25 H 0.08 1.13 7.60 -2.39 -0.02 1.11 16 26 H 0.09 1.59 5.72 -2.39 -0.01 1.58 16 27 H 0.08 1.32 8.03 -2.39 -0.02 1.30 16 28 H 0.06 2.49 7.51 -2.39 -0.02 2.47 16 29 H 0.10 3.03 8.07 -2.39 -0.02 3.01 16 30 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 31 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 32 H 0.38 20.69 7.67 -92.71 -0.71 19.97 16 33 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 34 H 0.16 2.78 7.65 -2.91 -0.02 2.75 16 35 H 0.19 0.65 8.06 -2.91 -0.02 0.63 16 36 H 0.17 1.76 7.64 -2.91 -0.02 1.74 16 37 H 0.42 3.55 6.99 -92.71 -0.65 2.90 16 38 H 0.42 2.98 8.93 -92.71 -0.83 2.15 16 Total: -1.00 -78.02 330.51 0.30 -77.72 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: -1.05 Total: 21.88 kcal Atomic # 6 Polarization: 18.95 SS G_CDS: 6.02 Total: 24.97 kcal Atomic # 7 Polarization: -131.78 SS G_CDS: -6.57 Total: -138.35 kcal Atomic # 8 Polarization: -34.75 SS G_CDS: -0.12 Total: -34.88 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -78.02 0.30 -77.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753266215.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.569 kcal (2) G-P(sol) polarization free energy of solvation -78.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds