Wall clock time and date at job start Tue Mar 31 2020 03:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35301 * 116.99829 * 2 1 4 4 N 1.32471 * 119.02251 * 179.97438 * 3 2 1 5 5 C 1.32005 * 120.91573 * 180.02562 * 4 3 2 6 6 C 1.40061 * 118.99024 * 359.97438 * 5 4 3 7 7 C 1.47626 * 120.88054 * 179.97438 * 6 5 4 8 8 O 1.21574 * 120.00512 * 359.72981 * 7 6 5 9 9 N 1.34784 * 119.99738 * 179.97438 * 7 6 5 10 10 C 1.46499 * 119.99893 * 179.73007 * 9 7 6 11 11 C 1.50699 * 109.46700 * 180.02562 * 10 9 7 12 12 C 1.31006 * 120.00263 * 125.00023 * 11 10 9 13 13 C 1.50698 * 120.00161 * 179.97438 * 12 11 10 14 14 N 1.46505 * 109.46836 * 124.99857 * 13 12 11 15 15 C 1.36935 * 119.99560 * 180.02562 * 14 13 12 16 16 H 1.07992 * 120.00304 * 359.97438 * 15 14 13 17 17 C 1.38821 * 119.99472 * 179.97438 * 15 14 13 18 18 N 1.31614 * 120.00107 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99531 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47505 * 60.00639 * 19 17 15 21 21 H 1.48503 * 109.47053 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47721 * 300.00190 * 19 17 15 23 23 C 1.40054 * 118.23237 * 0.25444 * 6 5 4 24 24 N 1.32021 * 118.98725 * 359.46421 * 23 6 5 25 25 H 1.08996 * 109.47282 * 299.99757 * 1 2 3 26 26 H 1.08997 * 109.47202 * 60.00256 * 1 2 3 27 27 H 1.09007 * 109.46956 * 179.97438 * 1 2 3 28 28 H 1.08008 * 120.50618 * 179.97438 * 5 4 3 29 29 H 0.97005 * 119.99846 * 359.72795 * 9 7 6 30 30 H 1.08998 * 109.47134 * 299.99552 * 10 9 7 31 31 H 1.08994 * 109.47397 * 59.99843 * 10 9 7 32 32 H 1.08001 * 120.00027 * 304.99186 * 11 10 9 33 33 H 1.07994 * 119.99490 * 359.97438 * 12 11 10 34 34 H 1.08996 * 109.47371 * 245.00207 * 13 12 11 35 35 H 1.09006 * 109.46786 * 5.00360 * 13 12 11 36 36 H 0.97001 * 119.99738 * 359.97438 * 14 13 12 37 37 H 0.97001 * 119.99862 * 179.97438 * 18 17 15 38 38 H 1.08001 * 120.50330 * 179.73034 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0432 1.2056 0.0000 4 7 3.3670 1.2523 0.0005 5 6 4.0048 2.4081 0.0010 6 6 3.2602 3.5943 0.0005 7 6 3.9304 4.9097 0.0016 8 8 5.1445 4.9734 0.0080 9 7 3.1963 6.0401 0.0006 10 6 3.8613 7.3454 0.0076 11 6 2.8234 8.4379 0.0054 12 6 2.8392 9.3584 0.9375 13 6 1.8015 10.4512 0.9349 14 7 1.1157 10.4764 2.2293 15 6 0.1250 11.3928 2.4614 16 1 -0.1504 12.0972 1.6906 17 6 -0.5253 11.4162 3.6877 18 7 -0.1892 10.5581 4.6273 19 14 -1.8762 12.6668 4.0046 20 1 -2.9719 12.4718 3.0213 21 1 -2.4065 12.4848 5.3797 22 1 -1.3241 14.0382 3.8650 23 6 1.8629 3.4994 0.0049 24 7 1.3028 2.3039 -0.0014 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 5.0845 2.4385 0.0019 29 1 2.2276 5.9893 -0.0049 30 1 4.4791 7.4335 0.9013 31 1 4.4890 7.4382 -0.8786 32 1 2.0665 8.4621 -0.7646 33 1 3.5959 9.3340 1.7076 34 1 2.2862 11.4121 0.7618 35 1 1.0766 10.2620 0.1432 36 1 1.3629 9.8434 2.9215 37 1 -0.6433 10.5747 5.4842 38 1 1.2529 4.3907 0.0090 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754191509.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:29 Heat of formation + Delta-G solvation = 16.307566 kcal Electronic energy + Delta-G solvation = -21425.166616 eV Core-core repulsion = 17883.751550 eV Total energy + Delta-G solvation = -3541.415066 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.79248 -39.83862 -38.54600 -36.38879 -34.95059 -34.32989 -33.04308 -32.03248 -30.55618 -28.25917 -27.20047 -25.20214 -24.84227 -23.80293 -22.01031 -21.16574 -19.68911 -19.30201 -18.48937 -18.01917 -17.14516 -16.89705 -15.96202 -15.55330 -15.49766 -14.96080 -14.90259 -14.56871 -14.37532 -14.01734 -13.79103 -13.59947 -13.29683 -12.87427 -12.46129 -12.27462 -12.11078 -11.92441 -11.76597 -11.43288 -11.08531 -10.84554 -10.70874 -10.30552 -10.14438 -9.85046 -9.72822 -9.59439 -9.35939 -9.06427 -8.79062 -7.00228 -5.82520 -3.12384 0.10751 0.55881 2.05893 2.16729 2.54739 3.09948 3.38919 3.40369 3.44913 3.45983 3.46325 3.97883 4.17808 4.38011 4.54004 4.56585 4.78416 4.84426 4.89436 5.08866 5.17342 5.21163 5.49758 5.51907 5.55914 5.71714 5.91867 6.06915 6.14153 6.15892 6.40448 6.50984 6.57895 6.81967 7.06857 7.22369 7.51989 7.63381 7.90411 8.35704 9.47064 10.02784 10.37961 11.40051 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.016034 B = 0.002606 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.853290 B =10740.410855 C =12110.285535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.285 6.285 3 C 0.516 3.484 4 N -0.526 5.526 5 C 0.251 3.749 6 C -0.283 4.283 7 C 0.574 3.426 8 O -0.536 6.536 9 N -0.717 5.717 10 C 0.157 3.843 11 C -0.206 4.206 12 C -0.102 4.102 13 C 0.172 3.828 14 N -0.730 5.730 15 C -0.244 4.244 16 H 0.071 0.929 17 C -0.012 4.012 18 N -0.933 5.933 19 Si 0.909 3.091 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.227 3.773 24 N -0.568 5.568 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.107 0.893 28 H 0.192 0.808 29 H 0.402 0.598 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.116 0.884 33 H 0.110 0.890 34 H 0.032 0.968 35 H 0.026 0.974 36 H 0.385 0.615 37 H 0.257 0.743 38 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.513 -18.185 -12.022 22.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.185 6.185 3 C 0.215 3.785 4 N -0.251 5.251 5 C 0.083 3.917 6 C -0.292 4.292 7 C 0.359 3.641 8 O -0.414 6.414 9 N -0.368 5.368 10 C 0.034 3.966 11 C -0.225 4.225 12 C -0.122 4.122 13 C 0.045 3.955 14 N -0.374 5.374 15 C -0.375 4.375 16 H 0.089 0.911 17 C -0.209 4.209 18 N -0.581 5.581 19 Si 0.740 3.260 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.212 1.212 23 C 0.060 3.940 24 N -0.297 5.297 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.125 0.875 28 H 0.209 0.791 29 H 0.237 0.763 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.134 0.866 33 H 0.128 0.872 34 H 0.049 0.951 35 H 0.044 0.956 36 H 0.219 0.781 37 H 0.066 0.934 38 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 4.815 -19.248 -12.032 23.204 hybrid contribution -1.089 1.419 0.504 1.858 sum 3.726 -17.829 -11.528 21.556 Atomic orbital electron populations 1.23107 0.75006 1.03983 1.03345 1.86081 1.23934 1.22524 1.85952 1.21017 0.86348 0.84951 0.86163 1.67754 1.07278 1.29903 1.20173 1.23400 1.01283 0.84163 0.82848 1.21603 0.96181 0.96800 1.14589 1.17586 0.86768 0.83092 0.76649 1.90805 1.13142 1.87240 1.50165 1.45946 1.10483 1.05714 1.74663 1.20372 0.94042 0.79555 1.02611 1.22680 1.01119 0.97101 1.01613 1.23366 0.97528 0.95535 0.95757 1.19837 0.91261 0.94069 0.90375 1.42286 1.42485 1.41173 1.11461 1.19193 1.10501 1.09740 0.98080 0.91109 1.24767 1.00286 0.99421 0.96393 1.69651 1.44629 1.38427 1.05368 0.86237 0.81774 0.80946 0.77029 1.21199 1.21626 1.21177 1.23267 0.91404 0.94805 0.84524 1.68105 1.40976 0.99014 1.21606 0.91390 0.91505 0.87517 0.79143 0.76312 0.90818 0.90692 0.86649 0.87180 0.95077 0.95636 0.78134 0.93362 0.80462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.35 101.05 1.05 1.31 16 2 O -0.28 -2.92 10.55 -17.59 -0.19 -3.10 16 3 C 0.52 5.81 8.48 -90.99 -0.77 5.03 16 4 N -0.53 -6.08 10.45 -14.39 -0.15 -6.23 16 5 C 0.25 2.52 10.87 -16.79 -0.18 2.34 16 6 C -0.28 -2.78 5.90 -104.70 -0.62 -3.39 16 7 C 0.57 6.48 7.78 -12.43 -0.10 6.39 16 8 O -0.54 -7.69 16.44 5.30 0.09 -7.61 16 9 N -0.72 -7.20 5.51 -62.50 -0.34 -7.54 16 10 C 0.16 1.74 6.11 -5.19 -0.03 1.71 16 11 C -0.21 -2.51 9.24 -36.03 -0.33 -2.84 16 12 C -0.10 -1.55 9.24 -36.03 -0.33 -1.88 16 13 C 0.17 3.28 6.70 -5.19 -0.03 3.24 16 14 N -0.73 -18.07 5.59 -61.08 -0.34 -18.42 16 15 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 16 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 17 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 18 N -0.93 -27.82 13.06 55.49 0.72 -27.09 16 19 Si 0.91 22.01 29.55 -169.99 -5.02 16.98 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 23 C 0.23 1.99 10.81 -16.79 -0.18 1.81 16 24 N -0.57 -5.79 9.19 -14.39 -0.13 -5.93 16 25 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 26 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 27 H 0.11 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.19 1.59 7.74 -52.48 -0.41 1.19 16 29 H 0.40 3.19 6.59 -40.82 -0.27 2.93 16 30 H 0.07 0.89 7.79 -51.93 -0.40 0.49 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.12 1.31 7.84 -52.49 -0.41 0.90 16 33 H 0.11 1.63 7.84 -52.49 -0.41 1.22 16 34 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.03 0.48 7.79 -51.93 -0.40 0.08 16 36 H 0.39 10.04 7.66 -40.82 -0.31 9.73 16 37 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.18 1.04 6.53 -52.49 -0.34 0.69 16 LS Contribution 339.13 15.07 5.11 5.11 Total: -1.00 -33.91 339.13 -6.65 -40.57 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -4.62 Total: 6.86 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: -1.78 Total: 6.40 kcal Atomic # 7 Polarization: -64.97 SS G_CDS: -0.24 Total: -65.21 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: -0.10 Total: -10.71 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.91 -6.65 -40.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754191509.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.876 kcal (2) G-P(sol) polarization free energy of solvation -33.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds