Wall clock time and date at job start Tue Mar 31 2020 03:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35520 * 117.00483 * 2 1 4 4 C 1.39346 * 120.02764 * 179.97438 * 3 2 1 5 5 C 1.38416 * 118.03375 * 179.76820 * 4 3 2 6 6 C 1.39983 * 117.96944 * 0.48582 * 5 4 3 7 7 C 1.47935 * 120.11287 * 179.77910 * 6 5 4 8 8 O 1.21538 * 120.00830 * 359.72556 * 7 6 5 9 9 N 1.34777 * 119.99436 * 179.72465 * 7 6 5 10 10 C 1.46501 * 119.99904 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.47273 * 174.31505 * 10 9 7 12 12 N 1.46502 * 115.55067 * 324.36764 * 11 10 9 13 13 C 1.36946 * 119.99595 * 294.57694 * 12 11 10 14 14 H 1.08001 * 119.99561 * 352.95434 * 13 12 11 15 15 C 1.38805 * 119.99803 * 172.95035 * 13 12 11 16 16 N 1.31621 * 119.99665 * 180.02562 * 15 13 12 17 17 Si 1.86807 * 120.00175 * 0.02562 * 15 13 12 18 18 H 1.48495 * 109.46886 * 89.99832 * 17 15 13 19 19 H 1.48497 * 109.46816 * 209.99985 * 17 15 13 20 20 H 1.48500 * 109.46790 * 329.99475 * 17 15 13 21 21 C 1.53000 * 117.49693 * 110.03013 * 11 10 9 22 22 C 1.52998 * 117.50127 * 178.69009 * 11 10 9 23 23 N 1.32748 * 119.76341 * 359.50831 * 6 5 4 24 24 N 1.28350 * 122.09013 * 0.24787 * 23 6 5 25 25 H 1.08999 * 109.47332 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46761 * 300.00612 * 1 2 3 27 27 H 1.09003 * 109.46564 * 59.99919 * 1 2 3 28 28 H 1.08002 * 120.98365 * 0.02896 * 4 3 2 29 29 H 1.08002 * 121.01641 * 180.24162 * 5 4 3 30 30 H 0.97000 * 120.00449 * 0.02562 * 9 7 6 31 31 H 1.09001 * 109.46792 * 54.32070 * 10 9 7 32 32 H 1.08999 * 109.47568 * 294.31642 * 10 9 7 33 33 H 0.96991 * 120.00252 * 114.85725 * 12 11 10 34 34 H 0.97010 * 119.99481 * 180.02562 * 16 15 13 35 35 H 1.08998 * 117.50413 * 215.00645 * 21 11 10 36 36 H 1.09003 * 117.49560 * 0.02767 * 21 11 10 37 37 H 1.09003 * 117.49566 * 359.97438 * 22 11 10 38 38 H 1.08998 * 117.50166 * 144.97338 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2074 0.0000 4 6 3.4359 1.2809 0.0005 5 6 4.0211 2.5353 -0.0044 6 6 3.1783 3.6530 0.0008 7 6 3.7532 5.0160 0.0008 8 8 4.9592 5.1671 0.0012 9 7 2.9395 6.0905 0.0002 10 6 3.5088 7.4404 -0.0004 11 6 2.3843 8.4680 -0.1439 12 7 1.2684 8.0676 -1.0045 13 6 1.4714 7.8795 -2.3457 14 1 2.4226 8.1351 -2.7889 15 6 0.4548 7.3604 -3.1354 16 7 0.6501 7.1792 -4.4244 17 14 -1.1906 6.9189 -2.3688 18 1 -2.0920 8.0980 -2.4184 19 1 -1.8026 5.7957 -3.1232 20 1 -0.9849 6.5120 -0.9556 21 6 2.0610 9.3360 1.0739 22 6 2.7739 9.9475 -0.1348 23 7 1.8615 3.4853 0.0003 24 7 1.3224 2.3205 -0.0001 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 4.0399 0.3856 0.0005 29 1 5.0952 2.6483 -0.0082 30 1 1.9770 5.9700 0.0002 31 1 4.2023 7.5418 -0.8352 32 1 4.0398 7.6112 0.9360 33 1 0.3850 7.9397 -0.6251 34 1 -0.0606 6.8167 -4.9763 35 1 1.0182 9.6093 1.2347 36 1 2.6498 9.1753 1.9770 37 1 3.8314 10.1888 -0.0263 38 1 2.2004 10.6229 -0.7696 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754531090.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:52 Heat of formation + Delta-G solvation = 37.149410 kcal Electronic energy + Delta-G solvation = -23125.958772 eV Core-core repulsion = 19585.447476 eV Total energy + Delta-G solvation = -3540.511296 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.38940 -39.42840 -38.43875 -37.53749 -33.91571 -33.26164 -33.07078 -31.91418 -30.34292 -27.94660 -26.89979 -24.97947 -23.89086 -23.56189 -21.95827 -20.76105 -19.27288 -18.84700 -17.98594 -17.68117 -17.51550 -16.51637 -15.84307 -15.21802 -15.07342 -14.74056 -14.44471 -14.29719 -14.21353 -13.91540 -13.80618 -13.09332 -12.69647 -12.47844 -12.33865 -12.27337 -11.98173 -11.72476 -11.16114 -11.03189 -10.99567 -10.45126 -10.43741 -10.28259 -9.86022 -9.79776 -9.61523 -9.44359 -9.31175 -8.88407 -8.51154 -7.38162 -5.80951 -3.20498 0.50035 0.62151 2.63061 2.79412 3.32374 3.36925 3.40927 3.45923 3.71119 3.88294 4.17353 4.34723 4.55889 4.63894 4.71933 4.92682 4.96054 5.01431 5.08705 5.18686 5.28983 5.42630 5.43656 5.48648 5.60127 5.80742 5.87493 6.03247 6.11383 6.25729 6.36980 6.47144 6.68871 6.73189 6.85699 7.89540 7.95940 8.36545 8.41669 8.51576 9.13830 9.85262 10.02525 11.36391 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.013193 B = 0.005535 C = 0.004384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.795328 B = 5057.389035 C = 6384.647594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.299 6.299 3 C 0.272 3.728 4 C -0.142 4.142 5 C -0.032 4.032 6 C 0.001 3.999 7 C 0.576 3.424 8 O -0.546 6.546 9 N -0.675 5.675 10 C 0.150 3.850 11 C 0.131 3.869 12 N -0.713 5.713 13 C -0.243 4.243 14 H 0.091 0.909 15 C 0.013 3.987 16 N -0.927 5.927 17 Si 0.877 3.123 18 H -0.286 1.286 19 H -0.291 1.291 20 H -0.270 1.270 21 C -0.188 4.188 22 C -0.184 4.184 23 N -0.161 5.161 24 N -0.297 5.297 25 H 0.102 0.898 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.162 0.838 29 H 0.170 0.830 30 H 0.416 0.584 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.366 0.634 34 H 0.260 0.740 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.265 -10.574 12.691 16.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.202 6.202 3 C 0.088 3.912 4 C -0.172 4.172 5 C -0.061 4.061 6 C -0.148 4.148 7 C 0.358 3.642 8 O -0.424 6.424 9 N -0.325 5.325 10 C 0.024 3.976 11 C 0.038 3.962 12 N -0.354 5.354 13 C -0.372 4.372 14 H 0.109 0.891 15 C -0.184 4.184 16 N -0.574 5.574 17 Si 0.707 3.293 18 H -0.212 1.212 19 H -0.217 1.217 20 H -0.196 1.196 21 C -0.226 4.226 22 C -0.224 4.224 23 N -0.010 5.010 24 N -0.155 5.155 25 H 0.120 0.880 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.180 0.820 29 H 0.187 0.813 30 H 0.255 0.745 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.200 0.800 34 H 0.070 0.930 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.759 -10.133 12.421 16.266 hybrid contribution -0.692 -0.967 0.184 1.203 sum 2.067 -11.100 12.606 16.923 Atomic orbital electron populations 1.23068 0.76241 1.03617 1.03373 1.86189 1.23693 1.23323 1.87031 1.21687 0.91077 0.87236 0.91193 1.21490 0.92138 0.99819 1.03720 1.22293 1.02975 0.90048 0.90764 1.22812 0.91907 0.96522 1.03545 1.17323 0.86140 0.82979 0.77772 1.90759 1.13747 1.85905 1.52019 1.45623 1.11482 1.04995 1.70355 1.21185 0.95092 0.80219 1.01056 1.20099 0.91676 0.89741 0.94700 1.42124 1.05022 1.82799 1.05460 1.18929 1.00957 1.35835 0.81522 0.89100 1.24669 0.97929 1.00347 0.95436 1.69702 1.33055 1.50385 1.04250 0.86656 0.85402 0.78083 0.79185 1.21230 1.21702 1.19579 1.23250 1.01409 1.05521 0.92412 1.23353 1.00024 0.98436 1.00581 1.73088 1.10172 1.13731 1.03966 1.73240 1.31312 0.94019 1.16925 0.88008 0.91667 0.91484 0.82010 0.81270 0.74542 0.90672 0.91773 0.80022 0.93008 0.89131 0.89070 0.89496 0.88416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.39 101.05 1.05 1.35 16 2 O -0.30 -3.46 10.48 -18.25 -0.19 -3.65 16 3 C 0.27 3.65 7.57 -16.78 -0.13 3.53 16 4 C -0.14 -1.59 10.14 -39.10 -0.40 -1.99 16 5 C -0.03 -0.41 9.72 -38.86 -0.38 -0.79 16 6 C 0.00 0.02 6.83 -82.85 -0.57 -0.55 16 7 C 0.58 10.57 7.81 -12.29 -0.10 10.47 16 8 O -0.55 -10.68 16.38 5.33 0.09 -10.59 16 9 N -0.67 -12.65 5.39 -61.22 -0.33 -12.98 16 10 C 0.15 2.69 5.70 -4.04 -0.02 2.66 16 11 C 0.13 2.40 2.45 -131.82 -0.32 2.08 16 12 N -0.71 -15.87 4.27 -47.23 -0.20 -16.07 16 13 C -0.24 -6.56 10.30 -15.06 -0.16 -6.71 16 14 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 15 C 0.01 0.36 5.50 -17.43 -0.10 0.27 16 16 N -0.93 -28.76 13.97 55.49 0.78 -27.98 16 17 Si 0.88 21.71 27.67 -169.99 -4.70 17.01 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 20 H -0.27 -6.25 6.63 56.52 0.37 -5.87 16 21 C -0.19 -2.79 10.11 -26.69 -0.27 -3.06 16 22 C -0.18 -2.98 10.18 -26.69 -0.27 -3.25 16 23 N -0.16 -2.87 10.73 33.32 0.36 -2.52 16 24 N -0.30 -4.83 10.40 30.54 0.32 -4.51 16 25 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.60 8.11 -51.93 -0.42 0.18 16 27 H 0.07 0.68 8.11 -51.93 -0.42 0.26 16 28 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 29 H 0.17 1.80 7.71 -52.49 -0.40 1.39 16 30 H 0.42 8.18 7.14 -40.82 -0.29 7.89 16 31 H 0.08 1.47 8.13 -51.93 -0.42 1.04 16 32 H 0.06 1.00 7.91 -51.93 -0.41 0.59 16 33 H 0.37 8.05 6.00 -40.82 -0.24 7.80 16 34 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 35 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.09 1.15 8.06 -51.93 -0.42 0.73 16 37 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 LS Contribution 334.99 15.07 5.05 5.05 Total: -1.00 -33.01 334.99 -5.22 -38.23 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -4.73 Total: 14.03 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: -1.65 Total: 3.99 kcal Atomic # 7 Polarization: -64.98 SS G_CDS: 0.92 Total: -64.06 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: -0.10 Total: -14.24 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.70 Total: 17.01 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.01 -5.22 -38.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754531090.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.381 kcal (2) G-P(sol) polarization free energy of solvation -33.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds