Wall clock time and date at job start Tue Mar 31 2020 02:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47924 * 2 1 4 4 C 1.53089 * 109.47956 * 239.97107 * 2 1 3 5 5 C 1.53177 * 109.16312 * 297.62631 * 4 2 1 6 6 H 1.08998 * 109.54544 * 62.88228 * 5 4 2 7 7 C 1.52993 * 109.54694 * 183.06834 * 5 4 2 8 8 H 1.08999 * 109.47479 * 59.31955 * 7 5 4 9 9 C 1.50701 * 109.47290 * 179.32754 * 7 5 4 10 10 H 1.07997 * 119.99935 * 55.04067 * 9 7 5 11 11 C 1.37877 * 119.99712 * 235.04022 * 9 7 5 12 12 N 1.31517 * 120.00180 * 173.81541 * 11 9 7 13 13 Si 1.86797 * 120.00258 * 353.81543 * 11 9 7 14 14 H 1.48504 * 109.46877 * 86.23979 * 13 11 9 15 15 H 1.48497 * 109.47384 * 206.23915 * 13 11 9 16 16 H 1.48503 * 109.47407 * 326.24073 * 13 11 9 17 17 C 1.50706 * 109.46819 * 299.32429 * 7 5 4 18 18 C 1.38240 * 119.97410 * 298.29416 * 17 7 5 19 19 C 1.38200 * 120.02673 * 179.76824 * 18 17 7 20 20 C 1.38463 * 119.97103 * 0.50596 * 19 18 17 21 21 F 1.35098 * 120.02314 * 179.77070 * 20 19 18 22 22 C 1.38455 * 119.94841 * 359.74921 * 20 19 18 23 23 C 1.38204 * 119.97437 * 359.97438 * 22 20 19 24 24 C 1.53184 * 109.03385 * 303.02132 * 5 4 2 25 25 C 1.53088 * 109.16325 * 56.97771 * 24 5 4 26 26 O 1.42897 * 109.41876 * 302.39338 * 25 24 5 27 27 H 1.09004 * 109.47425 * 299.97455 * 1 2 3 28 28 H 1.09001 * 109.47182 * 59.97184 * 1 2 3 29 29 H 1.08997 * 109.47208 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47064 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47081 * 300.03031 * 3 2 1 32 32 H 1.09000 * 109.46715 * 60.02321 * 3 2 1 33 33 H 1.09006 * 109.52165 * 57.52668 * 4 2 1 34 34 H 1.08991 * 109.52188 * 177.65424 * 4 2 1 35 35 H 0.96996 * 120.00089 * 180.02562 * 12 11 9 36 36 H 1.08002 * 119.98814 * 0.02562 * 18 17 7 37 37 H 1.08004 * 120.01660 * 180.25697 * 19 18 17 38 38 H 1.08004 * 120.01115 * 179.97438 * 22 20 19 39 39 H 1.08004 * 119.98286 * 179.97438 * 23 22 20 40 40 H 1.09008 * 109.52120 * 297.07277 * 24 5 4 41 41 H 1.09001 * 109.52505 * 176.88810 * 24 5 4 42 42 H 1.09007 * 109.48311 * 182.41289 * 25 24 5 43 43 H 1.09002 * 109.47848 * 62.37588 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4425 0.0000 4 6 2.0405 -0.7223 -1.2495 5 6 1.5757 -2.1813 -1.2121 6 1 0.4867 -2.2179 -1.2407 7 6 2.1449 -2.9310 -2.4182 8 1 3.2337 -2.8861 -2.3932 9 6 1.7001 -4.3701 -2.3709 10 1 0.6487 -4.6085 -2.3063 11 6 2.6354 -5.3823 -2.4101 12 7 2.2594 -6.6319 -2.2466 13 14 4.4369 -4.9789 -2.6953 14 1 5.0842 -4.6599 -1.3974 15 1 5.1143 -6.1476 -3.3121 16 1 4.5445 -3.8085 -3.6030 17 6 1.6449 -2.2922 -3.6884 18 6 0.2897 -2.2626 -3.9595 19 6 -0.1704 -1.6729 -5.1216 20 6 0.7275 -1.1209 -6.0195 21 9 0.2792 -0.5482 -7.1581 22 6 2.0850 -1.1558 -5.7494 23 6 2.5422 -1.7410 -4.5839 24 6 2.0764 -2.8322 0.0810 25 6 1.5645 -2.0283 1.2791 26 8 2.0065 -0.6741 1.1664 27 1 -0.3634 0.5134 0.8902 28 1 -0.3633 0.5143 -0.8897 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1301 1.4423 -0.0005 31 1 1.6765 1.9565 -0.8897 32 1 1.6773 1.9562 0.8902 33 1 1.6419 -0.2358 -2.1399 34 1 3.1296 -0.6864 -1.2715 35 1 2.9174 -7.3440 -2.2738 36 1 -0.4102 -2.6968 -3.2609 37 1 -1.2296 -1.6462 -5.3313 38 1 2.7863 -0.7259 -6.4493 39 1 3.6012 -1.7687 -4.3732 40 1 3.1665 -2.8400 0.0865 41 1 1.7037 -3.8546 0.1423 42 1 1.9531 -2.4620 2.2006 43 1 0.4750 -2.0549 1.2958 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000171689.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:19 Heat of formation + Delta-G solvation = -91.120338 kcal Electronic energy + Delta-G solvation = -24608.577675 eV Core-core repulsion = 21146.124567 eV Total energy + Delta-G solvation = -3462.453108 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.158 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.45456 -39.87300 -38.46634 -35.02931 -33.28150 -32.25662 -30.70757 -30.58121 -27.83942 -27.13566 -27.07617 -23.46917 -22.95348 -22.54250 -21.21595 -19.49847 -18.68662 -17.19814 -17.10811 -15.81232 -15.64863 -15.38374 -15.16720 -15.13049 -14.62468 -14.19886 -13.77446 -13.65823 -13.16194 -13.06153 -12.86276 -12.70256 -12.55679 -12.29165 -12.05064 -11.95829 -11.72606 -11.62040 -11.32293 -11.11431 -10.90251 -10.70873 -10.66247 -10.57712 -10.43167 -9.87365 -9.64781 -9.54198 -9.15895 -8.93896 -8.65052 -8.56550 -7.78418 -6.22230 -4.20925 1.77307 1.79060 3.19544 3.27509 3.29535 4.09680 4.20674 4.29791 4.75876 4.99568 5.10374 5.13138 5.21804 5.29287 5.30830 5.38121 5.61545 5.70639 5.74720 5.81390 5.83522 5.85715 5.88934 5.93131 5.94529 5.98819 6.07791 6.19634 6.26639 6.38977 6.42283 6.47806 6.58314 6.62782 6.65566 6.73390 6.79473 6.99382 7.02930 7.14380 7.35158 7.49611 7.59216 7.67659 8.35289 8.81620 9.39773 10.90057 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.010070 B = 0.008357 C = 0.005332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2779.929356 B = 3349.794976 C = 5250.380634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.111 3.889 3 C -0.136 4.136 4 C -0.140 4.140 5 C -0.069 4.069 6 H 0.065 0.935 7 C 0.050 3.950 8 H 0.044 0.956 9 C -0.501 4.501 10 H 0.077 0.923 11 C 0.078 3.922 12 N -0.892 5.892 13 Si 0.868 3.132 14 H -0.274 1.274 15 H -0.289 1.289 16 H -0.264 1.264 17 C -0.035 4.035 18 C -0.081 4.081 19 C -0.154 4.154 20 C 0.060 3.940 21 F -0.154 7.154 22 C -0.153 4.153 23 C -0.111 4.111 24 C -0.138 4.138 25 C 0.058 3.942 26 O -0.382 6.382 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.266 0.734 36 H 0.129 0.871 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.058 0.942 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.667 12.266 1.518 12.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.072 3.928 3 C -0.193 4.193 4 C -0.178 4.178 5 C -0.088 4.088 6 H 0.084 0.916 7 C 0.031 3.969 8 H 0.062 0.938 9 C -0.538 4.538 10 H 0.096 0.904 11 C -0.125 4.125 12 N -0.528 5.528 13 Si 0.696 3.304 14 H -0.199 1.199 15 H -0.215 1.215 16 H -0.189 1.189 17 C -0.036 4.036 18 C -0.099 4.099 19 C -0.173 4.173 20 C 0.042 3.958 21 F -0.133 7.133 22 C -0.172 4.172 23 C -0.129 4.129 24 C -0.176 4.176 25 C -0.019 4.019 26 O -0.302 6.302 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.147 0.853 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.077 0.923 41 H 0.109 0.891 42 H 0.102 0.898 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.501 12.160 1.620 12.359 hybrid contribution 0.794 -0.144 -0.779 1.121 sum -0.708 12.016 0.841 12.067 Atomic orbital electron populations 1.22427 0.96234 1.02909 1.01876 1.21437 0.92810 0.92281 0.86245 1.21742 1.01704 0.94045 1.01808 1.22332 1.01185 0.97362 0.96875 1.21278 0.99906 0.91832 0.95734 0.91641 1.18417 0.96272 0.95213 0.87025 0.93763 1.20797 0.95486 0.86949 1.50609 0.90448 1.25039 0.98453 0.94939 0.94111 1.69878 1.34708 0.99415 1.48848 0.86984 0.86001 0.78162 0.79244 1.19918 1.21549 1.18904 1.20717 0.92844 0.91836 0.98186 1.20837 0.96030 0.97206 0.95798 1.21064 0.99153 1.01702 0.95399 1.17577 0.92865 1.01090 0.84316 1.91418 1.90042 1.83085 1.48769 1.20975 0.93518 1.03534 0.99170 1.20979 0.99864 0.98381 0.93710 1.22102 1.01041 1.00852 0.93598 1.22664 0.98391 0.81865 0.98956 1.87871 1.74032 1.25186 1.43097 0.92590 0.91856 0.91421 0.92127 0.91481 0.92397 0.91496 0.91866 0.92446 0.85335 0.85843 0.85983 0.86109 0.92314 0.89063 0.89755 0.93401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.30 7.93 37.16 0.29 -2.01 16 2 C 0.11 1.60 1.11 -90.57 -0.10 1.50 16 3 C -0.14 -1.66 8.85 37.16 0.33 -1.33 16 4 C -0.14 -2.21 3.91 -26.59 -0.10 -2.31 16 5 C -0.07 -1.23 1.38 -90.44 -0.12 -1.35 16 6 H 0.07 1.16 5.95 -51.93 -0.31 0.85 16 7 C 0.05 1.02 1.49 -92.92 -0.14 0.89 16 8 H 0.04 0.95 4.56 -51.93 -0.24 0.71 16 9 C -0.50 -12.37 7.21 -34.44 -0.25 -12.62 16 10 H 0.08 2.08 8.00 -52.49 -0.42 1.66 16 11 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 12 N -0.89 -25.38 13.96 55.43 0.77 -24.60 16 13 Si 0.87 20.22 26.95 -169.99 -4.58 15.64 16 14 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 15 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 16 H -0.26 -5.85 6.70 56.52 0.38 -5.47 16 17 C -0.04 -0.67 3.61 -104.62 -0.38 -1.05 16 18 C -0.08 -1.45 8.79 -39.59 -0.35 -1.79 16 19 C -0.15 -2.55 10.03 -39.51 -0.40 -2.95 16 20 C 0.06 1.02 7.30 -39.42 -0.29 0.73 16 21 F -0.15 -2.55 17.27 2.25 0.04 -2.51 16 22 C -0.15 -2.54 10.03 -39.51 -0.40 -2.93 16 23 C -0.11 -2.00 9.67 -39.59 -0.38 -2.38 16 24 C -0.14 -2.50 5.11 -26.59 -0.14 -2.63 16 25 C 0.06 0.89 6.51 37.20 0.24 1.13 16 26 O -0.38 -6.15 10.24 -35.23 -0.36 -6.51 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.92 4.97 -51.93 -0.26 0.67 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.07 1.03 7.36 -51.93 -0.38 0.65 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.13 2.26 7.58 -52.49 -0.40 1.86 16 37 H 0.12 1.76 8.06 -52.48 -0.42 1.34 16 38 H 0.12 1.73 8.06 -52.48 -0.42 1.31 16 39 H 0.12 2.09 7.85 -52.48 -0.41 1.68 16 40 H 0.06 1.12 8.14 -51.92 -0.42 0.69 16 41 H 0.09 1.82 7.34 -51.93 -0.38 1.44 16 42 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 43 H 0.05 0.69 6.34 -51.93 -0.33 0.37 16 LS Contribution 337.25 15.07 5.08 5.08 Total: -1.00 -27.13 337.25 -7.83 -34.97 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -6.51 Total: 5.10 kcal Atomic # 6 Polarization: -24.89 SS G_CDS: -2.27 Total: -27.16 kcal Atomic # 7 Polarization: -25.38 SS G_CDS: 0.77 Total: -24.60 kcal Atomic # 8 Polarization: -6.15 SS G_CDS: -0.36 Total: -6.51 kcal Atomic # 9 Polarization: -2.55 SS G_CDS: 0.04 Total: -2.51 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -4.58 Total: 15.64 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -27.13 -7.83 -34.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000171689.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.155 kcal (2) G-P(sol) polarization free energy of solvation -27.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds