Wall clock time and date at job start Tue Mar 31 2020 02:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47924 * 2 1 4 4 C 1.53089 * 109.47956 * 239.97107 * 2 1 3 5 5 C 1.53177 * 109.16312 * 297.62631 * 4 2 1 6 6 H 1.08998 * 109.54544 * 62.88228 * 5 4 2 7 7 C 1.52993 * 109.54694 * 183.06834 * 5 4 2 8 8 H 1.08999 * 109.47479 * 59.31955 * 7 5 4 9 9 C 1.50701 * 109.47290 * 179.32754 * 7 5 4 10 10 H 1.07997 * 119.99935 * 55.04067 * 9 7 5 11 11 C 1.37877 * 119.99712 * 235.04022 * 9 7 5 12 12 N 1.31517 * 120.00180 * 173.81541 * 11 9 7 13 13 Si 1.86797 * 120.00258 * 353.81543 * 11 9 7 14 14 H 1.48504 * 109.46877 * 86.23979 * 13 11 9 15 15 H 1.48497 * 109.47384 * 206.23915 * 13 11 9 16 16 H 1.48503 * 109.47407 * 326.24073 * 13 11 9 17 17 C 1.50706 * 109.46819 * 299.32429 * 7 5 4 18 18 C 1.38240 * 119.97410 * 298.29416 * 17 7 5 19 19 C 1.38200 * 120.02673 * 179.76824 * 18 17 7 20 20 C 1.38463 * 119.97103 * 0.50596 * 19 18 17 21 21 F 1.35098 * 120.02314 * 179.77070 * 20 19 18 22 22 C 1.38455 * 119.94841 * 359.74921 * 20 19 18 23 23 C 1.38204 * 119.97437 * 359.97438 * 22 20 19 24 24 C 1.53184 * 109.03385 * 303.02132 * 5 4 2 25 25 C 1.53088 * 109.16325 * 56.97771 * 24 5 4 26 26 O 1.42897 * 109.41876 * 302.39338 * 25 24 5 27 27 H 1.09004 * 109.47425 * 299.97455 * 1 2 3 28 28 H 1.09001 * 109.47182 * 59.97184 * 1 2 3 29 29 H 1.08997 * 109.47208 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47064 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47081 * 300.03031 * 3 2 1 32 32 H 1.09000 * 109.46715 * 60.02321 * 3 2 1 33 33 H 1.09006 * 109.52165 * 57.52668 * 4 2 1 34 34 H 1.08991 * 109.52188 * 177.65424 * 4 2 1 35 35 H 0.96996 * 120.00089 * 180.02562 * 12 11 9 36 36 H 1.08002 * 119.98814 * 0.02562 * 18 17 7 37 37 H 1.08004 * 120.01660 * 180.25697 * 19 18 17 38 38 H 1.08004 * 120.01115 * 179.97438 * 22 20 19 39 39 H 1.08004 * 119.98286 * 179.97438 * 23 22 20 40 40 H 1.09008 * 109.52120 * 297.07277 * 24 5 4 41 41 H 1.09001 * 109.52505 * 176.88810 * 24 5 4 42 42 H 1.09007 * 109.48311 * 182.41289 * 25 24 5 43 43 H 1.09002 * 109.47848 * 62.37588 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4425 0.0000 4 6 2.0405 -0.7223 -1.2495 5 6 1.5757 -2.1813 -1.2121 6 1 0.4867 -2.2179 -1.2407 7 6 2.1449 -2.9310 -2.4182 8 1 3.2337 -2.8861 -2.3932 9 6 1.7001 -4.3701 -2.3709 10 1 0.6487 -4.6085 -2.3063 11 6 2.6354 -5.3823 -2.4101 12 7 2.2594 -6.6319 -2.2466 13 14 4.4369 -4.9789 -2.6953 14 1 5.0842 -4.6599 -1.3974 15 1 5.1143 -6.1476 -3.3121 16 1 4.5445 -3.8085 -3.6030 17 6 1.6449 -2.2922 -3.6884 18 6 0.2897 -2.2626 -3.9595 19 6 -0.1704 -1.6729 -5.1216 20 6 0.7275 -1.1209 -6.0195 21 9 0.2792 -0.5482 -7.1581 22 6 2.0850 -1.1558 -5.7494 23 6 2.5422 -1.7410 -4.5839 24 6 2.0764 -2.8322 0.0810 25 6 1.5645 -2.0283 1.2791 26 8 2.0065 -0.6741 1.1664 27 1 -0.3634 0.5134 0.8902 28 1 -0.3633 0.5143 -0.8897 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1301 1.4423 -0.0005 31 1 1.6765 1.9565 -0.8897 32 1 1.6773 1.9562 0.8902 33 1 1.6419 -0.2358 -2.1399 34 1 3.1296 -0.6864 -1.2715 35 1 2.9174 -7.3440 -2.2738 36 1 -0.4102 -2.6968 -3.2609 37 1 -1.2296 -1.6462 -5.3313 38 1 2.7863 -0.7259 -6.4493 39 1 3.6012 -1.7687 -4.3732 40 1 3.1665 -2.8400 0.0865 41 1 1.7037 -3.8546 0.1423 42 1 1.9531 -2.4620 2.2006 43 1 0.4750 -2.0549 1.2958 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000171689.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:19 Heat of formation + Delta-G solvation = -103.848444 kcal Electronic energy + Delta-G solvation = -24609.129607 eV Core-core repulsion = 21146.124567 eV Total energy + Delta-G solvation = -3463.005040 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.158 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.77372 -41.19267 -39.81706 -36.55020 -34.50332 -34.08297 -32.16471 -31.94397 -29.15938 -28.69190 -28.11701 -25.09256 -24.35905 -23.90492 -22.53472 -20.96293 -20.03481 -18.98425 -18.52850 -17.08573 -17.01974 -16.69233 -16.61989 -16.45686 -16.18563 -15.51232 -15.15441 -15.08229 -14.72694 -14.41487 -14.22162 -14.21011 -13.84716 -13.66428 -13.46650 -13.14485 -12.94159 -12.90387 -12.71193 -12.54667 -12.35976 -12.15821 -12.06661 -11.92582 -11.89282 -11.73304 -11.15196 -11.01350 -10.72207 -10.67233 -10.19231 -9.91800 -9.22464 -8.26498 -6.26119 0.38458 0.42620 1.32675 1.35736 1.42339 2.34380 2.79610 2.93979 3.12977 3.41338 3.81282 3.92963 3.98931 4.00139 4.06336 4.13367 4.26968 4.35829 4.48621 4.50822 4.56587 4.61261 4.66884 4.74108 4.82608 4.86502 4.91690 4.96403 5.04006 5.10675 5.16362 5.19463 5.23310 5.27309 5.31799 5.36168 5.44565 5.49347 5.57301 5.65201 5.70372 5.88606 6.10934 6.36760 6.45903 6.78363 7.37010 8.89458 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.010070 B = 0.008357 C = 0.005332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2779.929356 B = 3349.794976 C = 5250.380634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.105 3.895 3 C -0.133 4.133 4 C -0.131 4.131 5 C -0.063 4.063 6 H 0.064 0.936 7 C 0.052 3.948 8 H 0.037 0.963 9 C -0.484 4.484 10 H 0.043 0.957 11 C 0.023 3.977 12 N -0.944 5.944 13 Si 0.917 3.083 14 H -0.268 1.268 15 H -0.297 1.297 16 H -0.243 1.243 17 C -0.054 4.054 18 C -0.090 4.090 19 C -0.149 4.149 20 C 0.059 3.941 21 F -0.150 7.150 22 C -0.147 4.147 23 C -0.118 4.118 24 C -0.137 4.137 25 C 0.064 3.936 26 O -0.391 6.391 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.056 0.944 35 H 0.263 0.737 36 H 0.124 0.876 37 H 0.147 0.853 38 H 0.150 0.850 39 H 0.128 0.872 40 H 0.045 0.955 41 H 0.062 0.938 42 H 0.098 0.902 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.501 15.190 0.838 15.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.066 3.934 3 C -0.190 4.190 4 C -0.169 4.169 5 C -0.082 4.082 6 H 0.082 0.918 7 C 0.033 3.967 8 H 0.055 0.945 9 C -0.521 4.521 10 H 0.061 0.939 11 C -0.175 4.175 12 N -0.584 5.584 13 Si 0.742 3.258 14 H -0.194 1.194 15 H -0.223 1.223 16 H -0.167 1.167 17 C -0.055 4.055 18 C -0.108 4.108 19 C -0.168 4.168 20 C 0.040 3.960 21 F -0.129 7.129 22 C -0.165 4.165 23 C -0.136 4.136 24 C -0.175 4.175 25 C -0.013 4.013 26 O -0.311 6.311 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.102 0.898 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.142 0.858 37 H 0.165 0.835 38 H 0.167 0.833 39 H 0.146 0.854 40 H 0.064 0.936 41 H 0.081 0.919 42 H 0.116 0.884 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.337 15.124 0.934 15.212 hybrid contribution 0.628 -0.998 -0.613 1.329 sum -0.709 14.126 0.321 14.147 Atomic orbital electron populations 1.22397 0.95086 1.02528 1.03129 1.21642 0.93800 0.93144 0.84786 1.21748 1.01579 0.92471 1.03187 1.22238 1.00721 0.95672 0.98245 1.21144 0.99646 0.93202 0.94189 0.91755 1.18335 0.95841 0.93164 0.89365 0.94499 1.20968 0.93697 0.89306 1.48176 0.93873 1.25719 1.02284 0.94761 0.94717 1.70019 1.35824 1.00514 1.52043 0.86187 0.81621 0.78274 0.79676 1.19364 1.22345 1.16661 1.20553 0.93725 0.93509 0.97684 1.20836 0.95590 0.97773 0.96573 1.21253 1.00496 1.00544 0.94490 1.17703 0.93159 1.00768 0.84340 1.91435 1.90014 1.82941 1.48488 1.21207 0.93951 1.02488 0.98863 1.21076 1.00015 0.98571 0.93938 1.22037 1.00091 0.99931 0.95404 1.22608 0.98976 0.81581 0.98097 1.87873 1.74436 1.24987 1.43806 0.91343 0.90629 0.92613 0.92396 0.89801 0.91350 0.90757 0.92555 0.92827 0.85826 0.83540 0.83276 0.85433 0.93636 0.91918 0.88397 0.92351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.10 7.93 71.98 0.57 -3.53 16 2 C 0.11 2.78 1.11 -10.76 -0.01 2.77 16 3 C -0.13 -2.83 8.85 71.98 0.64 -2.20 16 4 C -0.13 -3.93 3.91 30.68 0.12 -3.81 16 5 C -0.06 -2.24 1.38 -10.67 -0.01 -2.26 16 6 H 0.06 2.29 5.95 -2.39 -0.01 2.28 16 7 C 0.05 2.14 1.49 -12.29 -0.02 2.12 16 8 H 0.04 1.57 4.56 -2.39 -0.01 1.56 16 9 C -0.48 -24.67 7.21 25.60 0.18 -24.49 16 10 H 0.04 2.45 8.00 -2.91 -0.02 2.42 16 11 C 0.02 1.24 5.47 84.65 0.46 1.70 16 12 N -0.94 -56.11 13.96 21.45 0.30 -55.81 16 13 Si 0.92 42.12 26.95 68.60 1.85 43.97 16 14 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 15 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 16 H -0.24 -10.20 6.70 99.48 0.67 -9.53 16 17 C -0.05 -2.02 3.61 -19.86 -0.07 -2.09 16 18 C -0.09 -3.12 8.79 22.26 0.20 -2.93 16 19 C -0.15 -4.58 10.03 22.31 0.22 -4.36 16 20 C 0.06 1.82 7.30 22.38 0.16 1.99 16 21 F -0.15 -4.47 17.27 44.97 0.78 -3.69 16 22 C -0.15 -4.38 10.03 22.31 0.22 -4.16 16 23 C -0.12 -3.97 9.67 22.26 0.22 -3.75 16 24 C -0.14 -5.01 5.11 30.69 0.16 -4.85 16 25 C 0.06 1.92 6.51 72.01 0.47 2.39 16 26 O -0.39 -11.88 10.24 -148.98 -1.52 -13.41 16 27 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 28 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.05 1.44 4.97 -2.39 -0.01 1.42 16 30 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.07 2.12 7.36 -2.38 -0.02 2.10 16 34 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 36 H 0.12 4.36 7.58 -2.91 -0.02 4.34 16 37 H 0.15 3.76 8.06 -2.91 -0.02 3.73 16 38 H 0.15 3.62 8.06 -2.91 -0.02 3.59 16 39 H 0.13 4.08 7.85 -2.91 -0.02 4.06 16 40 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 41 H 0.06 2.62 7.34 -2.39 -0.02 2.61 16 42 H 0.10 2.66 8.14 -2.38 -0.02 2.64 16 43 H 0.06 1.64 6.34 -2.39 -0.02 1.62 16 Total: -1.00 -59.25 337.25 5.86 -53.39 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: 0.95 Total: 23.02 kcal Atomic # 6 Polarization: -50.96 SS G_CDS: 3.51 Total: -47.45 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: 0.30 Total: -55.81 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: -1.52 Total: -13.41 kcal Atomic # 9 Polarization: -4.47 SS G_CDS: 0.78 Total: -3.69 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 1.85 Total: 43.97 kcal Total: -59.25 5.86 -53.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000171689.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.461 kcal (2) G-P(sol) polarization free energy of solvation -59.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds