Wall clock time and date at job start Tue Mar 31 2020 02:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47626 * 2 1 4 4 C 1.52998 * 109.49025 * 53.33782 * 3 2 1 5 5 C 1.53096 * 109.48139 * 173.37008 * 3 2 1 6 6 C 1.53170 * 109.16350 * 62.37486 * 5 3 2 7 7 C 1.50707 * 109.54579 * 297.02309 * 6 5 3 8 8 H 1.07995 * 120.00183 * 118.52508 * 7 6 5 9 9 C 1.37880 * 119.99725 * 298.53192 * 7 6 5 10 10 N 1.31510 * 120.00050 * 353.76857 * 9 7 6 11 11 Si 1.86801 * 119.99819 * 173.77603 * 9 7 6 12 12 H 1.48496 * 109.47517 * 89.99466 * 11 9 7 13 13 H 1.48502 * 109.46928 * 209.99959 * 11 9 7 14 14 H 1.48499 * 109.46978 * 329.99076 * 11 9 7 15 15 C 1.50704 * 109.54445 * 176.84949 * 6 5 3 16 16 C 1.38245 * 119.96874 * 356.08017 * 15 6 5 17 17 C 1.38200 * 120.01723 * 180.28236 * 16 15 6 18 18 C 1.38458 * 119.98041 * 359.41777 * 17 16 15 19 19 F 1.35097 * 120.02767 * 180.29888 * 18 17 16 20 20 C 1.38461 * 119.94306 * 0.28440 * 18 17 16 21 21 C 1.38194 * 119.97874 * 359.97438 * 20 18 17 22 22 C 1.53173 * 109.11446 * 56.93579 * 6 5 3 23 23 C 1.53111 * 109.15704 * 303.15353 * 22 6 5 24 24 O 1.42905 * 109.47941 * 293.31206 * 3 2 1 25 25 H 1.09005 * 109.46951 * 300.00063 * 1 2 3 26 26 H 1.09000 * 109.47352 * 59.99404 * 1 2 3 27 27 H 1.08997 * 109.47471 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46951 * 239.99937 * 2 1 3 29 29 H 1.09000 * 109.47352 * 120.00595 * 2 1 3 30 30 H 1.08993 * 109.46941 * 180.02562 * 4 3 2 31 31 H 1.08997 * 109.47198 * 300.03320 * 4 3 2 32 32 H 1.08998 * 109.46601 * 60.02934 * 4 3 2 33 33 H 1.08994 * 109.51983 * 302.46533 * 5 3 2 34 34 H 1.09000 * 109.57329 * 182.31059 * 5 3 2 35 35 H 0.96997 * 119.99895 * 180.02562 * 10 9 7 36 36 H 1.07994 * 119.99190 * 359.97438 * 16 15 6 37 37 H 1.08007 * 120.00828 * 179.69977 * 17 16 15 38 38 H 1.08002 * 120.00969 * 180.02562 * 20 18 17 39 39 H 1.07998 * 119.98704 * 179.97438 * 21 20 18 40 40 H 1.08997 * 109.52526 * 62.96559 * 22 6 5 41 41 H 1.09003 * 109.53174 * 183.16094 * 22 6 5 42 42 H 1.09002 * 109.40392 * 297.49129 * 23 22 6 43 43 H 1.08994 * 109.49201 * 177.50711 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.3984 2.2108 1.1570 5 6 3.5619 1.4458 0.1666 6 6 4.1999 0.7272 -1.0261 7 6 3.7582 -0.7136 -1.0418 8 1 3.1989 -1.0978 -1.8820 9 6 4.0680 -1.5412 0.0165 10 7 4.8514 -1.1102 0.9809 11 14 3.3750 -3.2747 0.0805 12 1 4.3096 -4.2069 -0.5996 13 1 3.2064 -3.6884 1.4968 14 1 2.0578 -3.3069 -0.6045 15 6 5.7011 0.7929 -0.9102 16 6 6.2835 1.5064 0.1207 17 6 7.6601 1.5722 0.2246 18 6 8.4557 0.9131 -0.6971 19 9 9.8014 0.9717 -0.5929 20 6 7.8711 0.1937 -1.7255 21 6 6.4944 0.1337 -1.8306 22 6 3.7556 1.4135 -2.3214 23 6 2.2261 1.4133 -2.3909 24 8 1.6963 2.0695 -1.2373 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.7616 3.2384 1.1564 31 1 0.3149 2.2083 1.0382 32 1 1.6615 1.7330 2.1006 33 1 3.8285 0.9289 1.0885 34 1 3.9225 2.4736 0.2080 35 1 5.0696 -1.6925 1.7252 36 1 5.6627 2.0168 0.8422 37 1 8.1150 2.1337 1.0273 38 1 8.4907 -0.3212 -2.4449 39 1 6.0383 -0.4271 -2.6330 40 1 4.1192 2.4409 -2.3325 41 1 4.1605 0.8735 -3.1773 42 1 1.8651 0.3852 -2.4222 43 1 1.9028 1.9395 -3.2890 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000171707.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:25 Heat of formation + Delta-G solvation = -67.938594 kcal Electronic energy + Delta-G solvation = -25469.058245 eV Core-core repulsion = 22007.610374 eV Total energy + Delta-G solvation = -3461.447872 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.158 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.14434 -39.86003 -37.80723 -34.30503 -33.47557 -31.58323 -30.42103 -29.74556 -28.66724 -26.80906 -25.34323 -23.89161 -22.73441 -21.49754 -21.32869 -19.39963 -18.34595 -16.89880 -16.39855 -15.59809 -15.28527 -15.00822 -14.83889 -14.57809 -14.30374 -13.83535 -13.42624 -13.23287 -12.90258 -12.82734 -12.62154 -12.35696 -12.04386 -11.84709 -11.67129 -11.41903 -11.28750 -11.10341 -11.03320 -10.83737 -10.73324 -10.43325 -10.26945 -10.19536 -9.92439 -9.68571 -9.43619 -9.21904 -9.01354 -8.44131 -8.23563 -8.12801 -7.43609 -6.12713 -4.13653 2.21781 2.23155 3.19135 3.28084 3.30897 4.28094 4.63311 4.66093 5.10680 5.12904 5.58668 5.63779 5.70034 5.76490 5.80891 5.88089 6.01881 6.06994 6.14755 6.23203 6.25580 6.31233 6.34266 6.40145 6.44162 6.53616 6.58997 6.61821 6.72749 6.79348 6.83048 6.91730 7.01307 7.01443 7.07455 7.10581 7.26712 7.42034 7.48248 7.63001 7.71719 7.85575 7.93225 8.18828 8.26750 8.70613 9.38799 10.87023 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.016256 B = 0.007213 C = 0.005997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.998980 B = 3880.864712 C = 4668.096059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.154 4.154 3 C 0.131 3.869 4 C -0.137 4.137 5 C -0.125 4.125 6 C 0.102 3.898 7 C -0.507 4.507 8 H 0.064 0.936 9 C 0.078 3.922 10 N -0.864 5.864 11 Si 0.873 3.127 12 H -0.282 1.282 13 H -0.286 1.286 14 H -0.270 1.270 15 C 0.008 3.992 16 C -0.079 4.079 17 C -0.160 4.160 18 C 0.053 3.947 19 F -0.161 7.161 20 C -0.163 4.163 21 C -0.084 4.084 22 C -0.136 4.136 23 C 0.070 3.930 24 O -0.389 6.389 25 H 0.041 0.959 26 H 0.047 0.953 27 H 0.037 0.963 28 H 0.123 0.877 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.095 0.905 34 H 0.031 0.969 35 H 0.262 0.738 36 H 0.122 0.878 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.121 0.879 40 H 0.046 0.954 41 H 0.060 0.940 42 H 0.057 0.943 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.068 3.895 -2.289 4.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.190 4.190 3 C 0.092 3.908 4 C -0.194 4.194 5 C -0.162 4.162 6 C 0.102 3.898 7 C -0.544 4.544 8 H 0.081 0.919 9 C -0.127 4.127 10 N -0.500 5.500 11 Si 0.701 3.299 12 H -0.208 1.208 13 H -0.211 1.211 14 H -0.194 1.194 15 C 0.008 3.992 16 C -0.097 4.097 17 C -0.179 4.179 18 C 0.035 3.965 19 F -0.140 7.140 20 C -0.182 4.182 21 C -0.102 4.102 22 C -0.173 4.173 23 C -0.007 4.007 24 O -0.309 6.309 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.141 0.859 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.113 0.887 34 H 0.050 0.950 35 H 0.073 0.927 36 H 0.140 0.860 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.139 0.861 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.044 4.002 -2.090 4.956 hybrid contribution 0.263 -1.447 0.387 1.521 sum -1.781 2.555 -1.702 3.549 Atomic orbital electron populations 1.21961 0.98924 0.99699 1.00650 1.22791 0.92319 0.97275 1.06644 1.21280 0.94529 0.91921 0.83058 1.21807 1.00514 0.99798 0.97323 1.22215 0.93425 0.97624 1.02980 1.17239 0.87143 0.95011 0.90402 1.20687 1.35607 0.93368 1.04707 0.91854 1.24820 0.94611 0.97421 0.95825 1.69892 1.33451 1.36104 1.10524 0.86878 0.79878 0.85575 0.77589 1.20797 1.21146 1.19442 1.20189 0.97248 0.90472 0.91336 1.20865 0.92474 0.98543 0.97799 1.20910 0.94697 1.02828 0.99437 1.17546 0.75986 1.03707 0.99300 1.91379 1.30776 1.95585 1.96254 1.20899 0.96124 1.02304 0.98874 1.20710 0.91318 0.98306 0.99840 1.22184 0.96199 0.99395 0.99556 1.22378 0.93392 0.97556 0.87339 1.87754 1.74946 1.53907 1.14287 0.93972 0.93362 0.94343 0.85938 0.91894 0.93171 0.92603 0.91879 0.88684 0.95026 0.92735 0.86045 0.86774 0.86733 0.86074 0.93544 0.92144 0.92454 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 9.28 37.16 0.34 -2.30 16 2 C -0.15 -2.98 3.13 -26.73 -0.08 -3.07 16 3 C 0.13 2.48 0.80 -90.57 -0.07 2.41 16 4 C -0.14 -2.30 8.31 37.16 0.31 -2.00 16 5 C -0.12 -2.53 2.43 -26.59 -0.06 -2.60 16 6 C 0.10 2.10 0.35 -156.63 -0.05 2.05 16 7 C -0.51 -11.18 3.62 -34.44 -0.12 -11.31 16 8 H 0.06 1.42 6.36 -52.49 -0.33 1.08 16 9 C 0.08 1.81 3.74 -17.82 -0.07 1.74 16 10 N -0.86 -21.03 10.27 55.43 0.57 -20.46 16 11 Si 0.87 19.13 29.18 -169.99 -4.96 14.17 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 14 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 15 C 0.01 0.17 3.39 -104.61 -0.35 -0.18 16 16 C -0.08 -1.61 8.65 -39.59 -0.34 -1.95 16 17 C -0.16 -3.11 10.03 -39.51 -0.40 -3.50 16 18 C 0.05 1.06 7.30 -39.42 -0.29 0.77 16 19 F -0.16 -3.09 17.27 2.25 0.04 -3.05 16 20 C -0.16 -3.15 10.03 -39.52 -0.40 -3.54 16 21 C -0.08 -1.69 8.85 -39.59 -0.35 -2.04 16 22 C -0.14 -2.51 4.70 -26.58 -0.12 -2.64 16 23 C 0.07 1.24 6.43 37.21 0.24 1.48 16 24 O -0.39 -7.45 9.84 -35.23 -0.35 -7.80 16 25 H 0.04 0.66 6.33 -51.93 -0.33 0.33 16 26 H 0.05 0.80 7.87 -51.93 -0.41 0.39 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.12 2.56 2.89 -51.93 -0.15 2.41 16 29 H 0.06 1.33 7.05 -51.93 -0.37 0.97 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.88 6.33 -51.93 -0.33 0.55 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.09 2.14 6.13 -51.93 -0.32 1.82 16 34 H 0.03 0.63 7.13 -51.93 -0.37 0.26 16 35 H 0.26 6.41 8.31 -40.82 -0.34 6.07 16 36 H 0.12 2.42 5.89 -52.49 -0.31 2.11 16 37 H 0.11 1.97 8.06 -52.48 -0.42 1.54 16 38 H 0.11 1.95 8.06 -52.49 -0.42 1.52 16 39 H 0.12 2.35 7.78 -52.49 -0.41 1.94 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.06 1.07 7.80 -51.93 -0.40 0.66 16 42 H 0.06 1.05 5.37 -51.93 -0.28 0.77 16 43 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 320.99 15.07 4.84 4.84 Total: -1.00 -23.89 320.99 -7.79 -31.68 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -6.10 Total: 7.29 kcal Atomic # 6 Polarization: -24.85 SS G_CDS: -1.83 Total: -26.67 kcal Atomic # 7 Polarization: -21.03 SS G_CDS: 0.57 Total: -20.46 kcal Atomic # 8 Polarization: -7.45 SS G_CDS: -0.35 Total: -7.80 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.04 Total: -3.05 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -4.96 Total: 14.17 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -23.89 -7.79 -31.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000171707.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.257 kcal (2) G-P(sol) polarization free energy of solvation -23.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds