Wall clock time and date at job start Tue Mar 31 2020 02:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47626 * 2 1 4 4 C 1.52998 * 109.49025 * 53.33782 * 3 2 1 5 5 C 1.53096 * 109.48139 * 173.37008 * 3 2 1 6 6 C 1.53170 * 109.16350 * 62.37486 * 5 3 2 7 7 C 1.50707 * 109.54579 * 297.02309 * 6 5 3 8 8 H 1.07995 * 120.00183 * 118.52508 * 7 6 5 9 9 C 1.37880 * 119.99725 * 298.53192 * 7 6 5 10 10 N 1.31510 * 120.00050 * 353.76857 * 9 7 6 11 11 Si 1.86801 * 119.99819 * 173.77603 * 9 7 6 12 12 H 1.48496 * 109.47517 * 89.99466 * 11 9 7 13 13 H 1.48502 * 109.46928 * 209.99959 * 11 9 7 14 14 H 1.48499 * 109.46978 * 329.99076 * 11 9 7 15 15 C 1.50704 * 109.54445 * 176.84949 * 6 5 3 16 16 C 1.38245 * 119.96874 * 356.08017 * 15 6 5 17 17 C 1.38200 * 120.01723 * 180.28236 * 16 15 6 18 18 C 1.38458 * 119.98041 * 359.41777 * 17 16 15 19 19 F 1.35097 * 120.02767 * 180.29888 * 18 17 16 20 20 C 1.38461 * 119.94306 * 0.28440 * 18 17 16 21 21 C 1.38194 * 119.97874 * 359.97438 * 20 18 17 22 22 C 1.53173 * 109.11446 * 56.93579 * 6 5 3 23 23 C 1.53111 * 109.15704 * 303.15353 * 22 6 5 24 24 O 1.42905 * 109.47941 * 293.31206 * 3 2 1 25 25 H 1.09005 * 109.46951 * 300.00063 * 1 2 3 26 26 H 1.09000 * 109.47352 * 59.99404 * 1 2 3 27 27 H 1.08997 * 109.47471 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46951 * 239.99937 * 2 1 3 29 29 H 1.09000 * 109.47352 * 120.00595 * 2 1 3 30 30 H 1.08993 * 109.46941 * 180.02562 * 4 3 2 31 31 H 1.08997 * 109.47198 * 300.03320 * 4 3 2 32 32 H 1.08998 * 109.46601 * 60.02934 * 4 3 2 33 33 H 1.08994 * 109.51983 * 302.46533 * 5 3 2 34 34 H 1.09000 * 109.57329 * 182.31059 * 5 3 2 35 35 H 0.96997 * 119.99895 * 180.02562 * 10 9 7 36 36 H 1.07994 * 119.99190 * 359.97438 * 16 15 6 37 37 H 1.08007 * 120.00828 * 179.69977 * 17 16 15 38 38 H 1.08002 * 120.00969 * 180.02562 * 20 18 17 39 39 H 1.07998 * 119.98704 * 179.97438 * 21 20 18 40 40 H 1.08997 * 109.52526 * 62.96559 * 22 6 5 41 41 H 1.09003 * 109.53174 * 183.16094 * 22 6 5 42 42 H 1.09002 * 109.40392 * 297.49129 * 23 22 6 43 43 H 1.08994 * 109.49201 * 177.50711 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.3984 2.2108 1.1570 5 6 3.5619 1.4458 0.1666 6 6 4.1999 0.7272 -1.0261 7 6 3.7582 -0.7136 -1.0418 8 1 3.1989 -1.0978 -1.8820 9 6 4.0680 -1.5412 0.0165 10 7 4.8514 -1.1102 0.9809 11 14 3.3750 -3.2747 0.0805 12 1 4.3096 -4.2069 -0.5996 13 1 3.2064 -3.6884 1.4968 14 1 2.0578 -3.3069 -0.6045 15 6 5.7011 0.7929 -0.9102 16 6 6.2835 1.5064 0.1207 17 6 7.6601 1.5722 0.2246 18 6 8.4557 0.9131 -0.6971 19 9 9.8014 0.9717 -0.5929 20 6 7.8711 0.1937 -1.7255 21 6 6.4944 0.1337 -1.8306 22 6 3.7556 1.4135 -2.3214 23 6 2.2261 1.4133 -2.3909 24 8 1.6963 2.0695 -1.2373 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.7616 3.2384 1.1564 31 1 0.3149 2.2083 1.0382 32 1 1.6615 1.7330 2.1006 33 1 3.8285 0.9289 1.0885 34 1 3.9225 2.4736 0.2080 35 1 5.0696 -1.6925 1.7252 36 1 5.6627 2.0168 0.8422 37 1 8.1150 2.1337 1.0273 38 1 8.4907 -0.3212 -2.4449 39 1 6.0383 -0.4271 -2.6330 40 1 4.1192 2.4409 -2.3325 41 1 4.1605 0.8735 -3.1773 42 1 1.8651 0.3852 -2.4222 43 1 1.9028 1.9395 -3.2890 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000171707.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:24 Heat of formation + Delta-G solvation = -76.863552 kcal Electronic energy + Delta-G solvation = -25469.445261 eV Core-core repulsion = 22007.610374 eV Total energy + Delta-G solvation = -3461.834887 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.158 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.67452 -41.40196 -39.33670 -35.91683 -34.93720 -33.29400 -31.95478 -31.22374 -30.18662 -28.32677 -27.00746 -25.39042 -24.24538 -23.03925 -22.85206 -20.99418 -19.89703 -18.43835 -18.06724 -17.15084 -16.83488 -16.55812 -16.37145 -16.23834 -15.79448 -15.40683 -14.91868 -14.79539 -14.43019 -14.33815 -14.14222 -13.87140 -13.60968 -13.35985 -13.15438 -12.95187 -12.80943 -12.65305 -12.58251 -12.49629 -12.28053 -11.98305 -11.89818 -11.76136 -11.45992 -11.21812 -11.03252 -10.81774 -10.64475 -10.09588 -9.80522 -9.67707 -9.03370 -7.91719 -5.92749 0.65004 0.67533 1.40711 1.49779 1.51670 2.49211 3.07872 3.19824 3.33055 3.58361 4.07489 4.17537 4.21000 4.31279 4.35568 4.41321 4.56339 4.65129 4.70249 4.76130 4.78626 4.87838 4.89885 4.94564 5.01309 5.02239 5.15938 5.22369 5.25971 5.29255 5.33662 5.44989 5.46283 5.48539 5.52479 5.54863 5.73639 5.76122 5.85008 5.96469 6.09415 6.23491 6.36391 6.48867 6.76697 6.94367 7.59144 9.05343 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.016256 B = 0.007213 C = 0.005997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.998980 B = 3880.864712 C = 4668.096059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.149 4.149 3 C 0.129 3.871 4 C -0.134 4.134 5 C -0.117 4.117 6 C 0.097 3.903 7 C -0.490 4.490 8 H 0.060 0.940 9 C 0.051 3.949 10 N -0.882 5.882 11 Si 0.904 3.096 12 H -0.291 1.291 13 H -0.296 1.296 14 H -0.264 1.264 15 C -0.004 4.004 16 C -0.091 4.091 17 C -0.161 4.161 18 C 0.043 3.957 19 F -0.158 7.158 20 C -0.162 4.162 21 C -0.096 4.096 22 C -0.132 4.132 23 C 0.068 3.932 24 O -0.393 6.393 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.042 0.958 28 H 0.108 0.892 29 H 0.040 0.960 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.030 0.970 35 H 0.253 0.747 36 H 0.120 0.880 37 H 0.134 0.866 38 H 0.137 0.863 39 H 0.126 0.874 40 H 0.047 0.953 41 H 0.067 0.933 42 H 0.051 0.949 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.693 4.519 -3.081 6.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.186 4.186 3 C 0.090 3.910 4 C -0.191 4.191 5 C -0.155 4.155 6 C 0.096 3.904 7 C -0.528 4.528 8 H 0.078 0.922 9 C -0.150 4.150 10 N -0.520 5.520 11 Si 0.733 3.267 12 H -0.217 1.217 13 H -0.223 1.223 14 H -0.188 1.188 15 C -0.005 4.005 16 C -0.109 4.109 17 C -0.180 4.180 18 C 0.024 3.976 19 F -0.137 7.137 20 C -0.181 4.181 21 C -0.114 4.114 22 C -0.170 4.170 23 C -0.008 4.008 24 O -0.313 6.313 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.125 0.875 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.049 0.951 35 H 0.063 0.937 36 H 0.138 0.862 37 H 0.151 0.849 38 H 0.155 0.845 39 H 0.144 0.856 40 H 0.066 0.934 41 H 0.086 0.914 42 H 0.069 0.931 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.682 4.625 -2.897 6.081 hybrid contribution 0.480 -1.631 0.600 1.803 sum -2.202 2.994 -2.297 4.369 Atomic orbital electron populations 1.21892 0.96891 1.00342 1.01537 1.22618 0.94122 0.97188 1.04632 1.21302 0.93686 0.92092 0.83925 1.21785 1.01180 0.99810 0.96371 1.22086 0.94627 0.97027 1.01753 1.17298 0.87217 0.94308 0.91558 1.20796 1.34090 0.94056 1.03823 0.92177 1.25106 0.95151 0.98685 0.96086 1.69988 1.34917 1.36194 1.10859 0.86400 0.79610 0.84031 0.76681 1.21735 1.22282 1.18779 1.20316 0.97520 0.90904 0.91764 1.20927 0.93009 0.99059 0.97870 1.21128 0.94422 1.02614 0.99832 1.17681 0.76226 1.04019 0.99624 1.91384 1.30453 1.95588 1.96259 1.21138 0.96071 1.01819 0.99047 1.20833 0.91837 0.98655 1.00083 1.22149 0.96920 0.99255 0.98685 1.22494 0.92697 0.97688 0.87913 1.87757 1.74962 1.54073 1.14499 0.92662 0.92822 0.93891 0.87464 0.94171 0.92513 0.91281 0.91836 0.91080 0.95126 0.93687 0.86188 0.84854 0.84504 0.85620 0.93418 0.91398 0.93098 0.88521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.79 9.28 71.98 0.67 -4.12 16 2 C -0.15 -5.63 3.13 30.59 0.10 -5.53 16 3 C 0.13 4.72 0.80 -10.76 -0.01 4.71 16 4 C -0.13 -4.28 8.31 71.98 0.60 -3.69 16 5 C -0.12 -4.71 2.43 30.68 0.07 -4.63 16 6 C 0.10 3.90 0.35 -53.56 -0.02 3.88 16 7 C -0.49 -21.41 3.62 25.60 0.09 -21.31 16 8 H 0.06 2.64 6.36 -2.91 -0.02 2.63 16 9 C 0.05 2.40 3.74 84.66 0.32 2.71 16 10 N -0.88 -43.41 10.27 21.45 0.22 -43.19 16 11 Si 0.90 39.22 29.18 68.60 2.00 41.22 16 12 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 13 H -0.30 -13.29 7.11 99.48 0.71 -12.58 16 14 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 15 C 0.00 -0.18 3.39 -19.86 -0.07 -0.25 16 16 C -0.09 -3.66 8.65 22.26 0.19 -3.47 16 17 C -0.16 -6.12 10.03 22.31 0.22 -5.89 16 18 C 0.04 1.66 7.30 22.38 0.16 1.82 16 19 F -0.16 -5.81 17.27 44.97 0.78 -5.03 16 20 C -0.16 -6.03 10.03 22.31 0.22 -5.80 16 21 C -0.10 -3.79 8.85 22.26 0.20 -3.59 16 22 C -0.13 -4.70 4.70 30.69 0.14 -4.55 16 23 C 0.07 2.28 6.43 72.02 0.46 2.74 16 24 O -0.39 -14.22 9.84 -148.98 -1.47 -15.69 16 25 H 0.05 1.61 6.33 -2.38 -0.02 1.59 16 26 H 0.05 1.65 7.87 -2.39 -0.02 1.63 16 27 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.11 4.39 2.89 -2.38 -0.01 4.38 16 29 H 0.04 1.69 7.05 -2.39 -0.02 1.67 16 30 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.07 2.00 6.33 -2.39 -0.02 1.98 16 32 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.07 3.23 6.13 -2.39 -0.01 3.21 16 34 H 0.03 1.20 7.13 -2.39 -0.02 1.19 16 35 H 0.25 12.63 8.31 -92.71 -0.77 11.86 16 36 H 0.12 4.80 5.89 -2.91 -0.02 4.78 16 37 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 38 H 0.14 4.37 8.06 -2.91 -0.02 4.35 16 39 H 0.13 4.75 7.78 -2.91 -0.02 4.73 16 40 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.07 2.28 7.80 -2.39 -0.02 2.26 16 42 H 0.05 1.77 5.37 -2.39 -0.01 1.76 16 43 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 Total: -1.00 -48.99 320.99 5.90 -43.09 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: 1.01 Total: 26.57 kcal Atomic # 6 Polarization: -50.33 SS G_CDS: 3.36 Total: -46.98 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: 0.22 Total: -43.19 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -1.47 Total: -15.69 kcal Atomic # 9 Polarization: -5.81 SS G_CDS: 0.78 Total: -5.03 kcal Atomic # 14 Polarization: 39.22 SS G_CDS: 2.00 Total: 41.22 kcal Total: -48.99 5.90 -43.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000171707.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.775 kcal (2) G-P(sol) polarization free energy of solvation -48.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds