Wall clock time and date at job start Tue Mar 31 2020 02:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47066 * 2 1 4 4 C 1.53003 * 109.49262 * 63.18593 * 3 2 1 5 5 C 1.53093 * 109.47849 * 183.21147 * 3 2 1 6 6 C 1.53179 * 109.16399 * 177.59020 * 5 3 2 7 7 C 1.50695 * 109.61602 * 62.93015 * 6 5 3 8 8 H 1.07999 * 120.00491 * 265.23120 * 7 6 5 9 9 C 1.37884 * 119.99959 * 85.22553 * 7 6 5 10 10 N 1.31513 * 120.00227 * 169.05519 * 9 7 6 11 11 Si 1.86804 * 119.99870 * 349.06267 * 9 7 6 12 12 H 1.48499 * 109.47160 * 84.33970 * 11 9 7 13 13 H 1.48503 * 109.46940 * 204.34280 * 11 9 7 14 14 H 1.48506 * 109.46594 * 324.34049 * 11 9 7 15 15 C 1.50700 * 109.54598 * 183.15622 * 6 5 3 16 16 C 1.38244 * 119.97149 * 186.83870 * 15 6 5 17 17 C 1.38207 * 120.02179 * 179.97438 * 16 15 6 18 18 C 1.38459 * 119.97341 * 0.22913 * 17 16 15 19 19 F 1.35101 * 120.02633 * 179.73012 * 18 17 16 20 20 C 1.38458 * 119.94756 * 359.49246 * 18 17 16 21 21 C 1.38197 * 119.97480 * 0.53208 * 20 18 17 22 22 C 1.53179 * 109.03483 * 303.02383 * 6 5 3 23 23 C 1.53092 * 109.16579 * 56.97764 * 22 6 5 24 24 O 1.42901 * 109.48025 * 303.15315 * 3 2 1 25 25 H 1.08996 * 109.47375 * 304.52769 * 1 2 3 26 26 H 1.09001 * 109.46895 * 64.52781 * 1 2 3 27 27 H 1.09005 * 109.47130 * 184.52336 * 1 2 3 28 28 H 1.08999 * 109.47099 * 239.99767 * 2 1 3 29 29 H 1.09004 * 109.46736 * 120.00044 * 2 1 3 30 30 H 1.09004 * 109.46690 * 322.62452 * 4 3 2 31 31 H 1.08995 * 109.46905 * 82.62147 * 4 3 2 32 32 H 1.08994 * 109.47063 * 202.62069 * 4 3 2 33 33 H 1.09004 * 109.52088 * 57.69100 * 5 3 2 34 34 H 1.08996 * 109.52529 * 297.50012 * 5 3 2 35 35 H 0.97000 * 120.00175 * 180.02562 * 10 9 7 36 36 H 1.07992 * 119.99429 * 359.97088 * 16 15 6 37 37 H 1.07993 * 120.00997 * 179.97438 * 17 16 15 38 38 H 1.08007 * 120.01553 * 180.25666 * 20 18 17 39 39 H 1.08007 * 119.98610 * 179.74455 * 21 20 18 40 40 H 1.08997 * 109.52186 * 176.88690 * 22 6 5 41 41 H 1.09003 * 109.52308 * 297.07168 * 22 6 5 42 42 H 1.09004 * 109.47976 * 62.37557 * 23 22 6 43 43 H 1.09000 * 109.47975 * 182.39653 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5967 2.1407 1.2873 5 6 3.5687 1.4434 -0.0809 6 6 4.0682 2.8903 -0.1412 7 6 3.6901 3.6093 1.1281 8 1 2.7828 4.1937 1.1680 9 6 4.5026 3.5210 2.2386 10 7 4.2952 4.3107 3.2696 11 14 5.8981 2.2799 2.2786 12 1 7.0922 2.8559 1.6096 13 1 6.2300 1.9534 3.6888 14 1 5.4814 1.0435 1.5692 15 6 5.5669 2.9001 -0.2989 16 6 6.2602 4.0944 -0.2349 17 6 7.6347 4.1046 -0.3790 18 6 8.3167 2.9187 -0.5922 19 9 9.6597 2.9280 -0.7386 20 6 7.6218 1.7225 -0.6504 21 6 6.2473 1.7148 -0.5066 22 6 3.4221 3.5923 -1.3396 23 6 1.8990 3.5083 -1.2101 24 8 1.5042 2.1373 -1.1279 25 1 -0.3634 0.5825 0.8466 26 1 -0.3633 0.4420 -0.9278 27 1 -0.3634 -1.0245 0.0811 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 0.5940 1.8072 1.5547 31 1 2.2888 1.8926 2.0919 32 1 1.5915 3.2195 1.1321 33 1 3.8864 0.9108 -0.9773 34 1 3.9805 0.9524 0.8008 35 1 4.8670 4.2488 4.0507 36 1 5.7277 5.0198 -0.0723 37 1 8.1761 5.0377 -0.3293 38 1 8.1531 0.7963 -0.8125 39 1 5.7046 0.7823 -0.5560 40 1 3.7290 4.6380 -1.3580 41 1 3.7368 3.1030 -2.2614 42 1 1.5813 4.0327 -0.3088 43 1 1.4341 3.9690 -2.0817 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000171711.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:32 Heat of formation + Delta-G solvation = -48.535322 kcal Electronic energy + Delta-G solvation = -25506.756078 eV Core-core repulsion = 22046.149596 eV Total energy + Delta-G solvation = -3460.606483 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.158 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.48296 -40.23389 -38.36941 -34.52713 -33.82464 -31.93566 -30.72256 -29.37872 -29.34095 -26.94103 -25.88476 -23.54680 -23.17360 -21.92797 -21.58503 -19.45966 -18.52126 -17.27549 -16.75964 -15.84017 -15.54096 -15.41346 -15.19375 -14.83826 -14.37042 -13.97981 -13.53711 -13.40337 -13.22278 -13.17280 -12.87354 -12.69588 -12.53482 -12.36994 -12.19818 -11.51612 -11.34072 -11.13424 -11.02638 -10.77176 -10.65919 -10.56265 -10.22399 -10.02729 -9.94837 -9.86299 -9.56235 -9.20076 -9.02740 -8.52383 -8.49400 -8.36490 -7.72211 -6.16483 -4.13178 1.69675 1.78899 3.31020 3.34391 3.48080 4.15304 4.40998 4.49592 4.74657 5.06268 5.25177 5.27437 5.31793 5.46667 5.60156 5.70246 5.78897 5.87264 5.88940 5.95641 5.99762 6.06685 6.14220 6.22742 6.27160 6.30619 6.39415 6.45375 6.55114 6.59679 6.61301 6.67044 6.67913 6.73293 6.78196 6.89713 6.97802 7.03756 7.07241 7.36331 7.46671 7.52746 7.67366 8.09163 8.36288 8.79879 9.44652 10.91729 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.019213 B = 0.006907 C = 0.006362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.964501 B = 4052.908442 C = 4400.172398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.109 4.109 3 C 0.130 3.870 4 C -0.163 4.163 5 C -0.140 4.140 6 C 0.080 3.920 7 C -0.508 4.508 8 H 0.089 0.911 9 C 0.086 3.914 10 N -0.890 5.890 11 Si 0.841 3.159 12 H -0.255 1.255 13 H -0.308 1.308 14 H -0.252 1.252 15 C -0.064 4.064 16 C -0.058 4.058 17 C -0.158 4.158 18 C 0.079 3.921 19 F -0.153 7.153 20 C -0.166 4.166 21 C -0.105 4.105 22 C -0.125 4.125 23 C 0.065 3.935 24 O -0.385 6.385 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.042 0.958 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.028 0.972 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.042 0.958 34 H 0.072 0.928 35 H 0.264 0.736 36 H 0.139 0.861 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.131 0.869 40 H 0.066 0.934 41 H 0.046 0.954 42 H 0.064 0.936 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.572 -4.287 -7.335 8.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.146 4.146 3 C 0.091 3.909 4 C -0.220 4.220 5 C -0.178 4.178 6 C 0.079 3.921 7 C -0.545 4.545 8 H 0.107 0.893 9 C -0.117 4.117 10 N -0.526 5.526 11 Si 0.671 3.329 12 H -0.180 1.180 13 H -0.237 1.237 14 H -0.178 1.178 15 C -0.065 4.065 16 C -0.076 4.076 17 C -0.177 4.177 18 C 0.060 3.940 19 F -0.131 7.131 20 C -0.185 4.185 21 C -0.123 4.123 22 C -0.162 4.162 23 C -0.012 4.012 24 O -0.305 6.305 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.061 0.939 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.047 0.953 31 H 0.087 0.913 32 H 0.108 0.892 33 H 0.060 0.940 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.157 0.843 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.149 0.851 40 H 0.085 0.915 41 H 0.065 0.935 42 H 0.082 0.918 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.578 -4.308 -7.283 8.481 hybrid contribution 1.506 -0.597 0.536 1.707 sum 0.929 -4.905 -6.747 8.393 Atomic orbital electron populations 1.21745 0.95884 1.00281 1.02532 1.21516 0.96257 0.95338 1.01501 1.21256 0.92280 0.90848 0.86500 1.22776 0.98541 1.03475 0.97168 1.22665 0.95446 0.99165 1.00492 1.17584 0.85984 0.92792 0.95719 1.20894 1.09792 1.30613 0.93165 0.89338 1.24900 0.96551 0.94679 0.95548 1.69891 1.39502 1.36639 1.06573 0.87779 0.84973 0.83931 0.76191 1.18022 1.23739 1.17816 1.20332 0.98392 0.92108 0.95640 1.20943 0.92072 0.99401 0.95189 1.21066 0.95567 0.96608 1.04430 1.17640 0.76509 0.95127 1.04762 1.91421 1.30563 1.97490 1.93669 1.20946 0.95179 0.96514 1.05861 1.21113 0.93026 0.99254 0.98930 1.22052 0.96012 1.00745 0.97430 1.22493 0.94368 0.83372 1.00922 1.87773 1.72534 1.23167 1.47040 0.92294 0.92283 0.93893 0.92292 0.91377 0.95318 0.91256 0.89196 0.93964 0.90988 0.92625 0.84291 0.85659 0.85821 0.85098 0.91542 0.93499 0.91835 0.90828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.53 37.16 0.35 -1.73 16 2 C -0.11 -1.70 5.19 -26.73 -0.14 -1.84 16 3 C 0.13 2.36 0.79 -90.57 -0.07 2.29 16 4 C -0.16 -3.19 7.26 37.16 0.27 -2.92 16 5 C -0.14 -2.68 2.41 -26.59 -0.06 -2.75 16 6 C 0.08 1.60 0.35 -156.63 -0.05 1.55 16 7 C -0.51 -11.81 4.71 -34.44 -0.16 -11.97 16 8 H 0.09 2.23 5.07 -52.49 -0.27 1.96 16 9 C 0.09 2.19 4.85 -17.82 -0.09 2.10 16 10 N -0.89 -24.74 13.96 55.43 0.77 -23.96 16 11 Si 0.84 19.82 21.70 -169.99 -3.69 16.13 16 12 H -0.26 -5.91 3.81 56.52 0.22 -5.69 16 13 H -0.31 -7.87 7.11 56.52 0.40 -7.47 16 14 H -0.25 -5.56 4.06 56.52 0.23 -5.33 16 15 C -0.06 -1.27 2.31 -104.62 -0.24 -1.52 16 16 C -0.06 -1.13 7.01 -39.59 -0.28 -1.41 16 17 C -0.16 -2.89 9.13 -39.51 -0.36 -3.26 16 18 C 0.08 1.45 6.66 -39.42 -0.26 1.19 16 19 F -0.15 -2.72 17.27 2.25 0.04 -2.68 16 20 C -0.17 -2.96 9.31 -39.52 -0.37 -3.33 16 21 C -0.11 -1.97 5.83 -39.60 -0.23 -2.20 16 22 C -0.12 -2.25 4.75 -26.59 -0.13 -2.37 16 23 C 0.06 1.13 6.43 37.20 0.24 1.37 16 24 O -0.39 -7.06 9.52 -35.23 -0.34 -7.40 16 25 H 0.06 0.85 5.99 -51.93 -0.31 0.54 16 26 H 0.06 0.85 7.75 -51.93 -0.40 0.45 16 27 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.03 0.51 5.73 -51.93 -0.30 0.21 16 31 H 0.07 1.51 7.01 -51.93 -0.36 1.14 16 32 H 0.09 1.90 3.27 -51.93 -0.17 1.73 16 33 H 0.04 0.76 7.00 -51.93 -0.36 0.40 16 34 H 0.07 1.48 4.95 -51.93 -0.26 1.22 16 35 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.14 2.72 7.86 -52.49 -0.41 2.31 16 37 H 0.13 2.01 8.06 -52.49 -0.42 1.59 16 38 H 0.12 1.88 8.06 -52.48 -0.42 1.46 16 39 H 0.13 2.30 5.71 -52.48 -0.30 2.00 16 40 H 0.07 1.17 8.00 -51.93 -0.42 0.76 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.06 1.18 4.99 -51.93 -0.26 0.92 16 43 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 302.39 15.07 4.56 4.56 Total: -1.00 -26.39 302.39 -6.51 -32.89 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -6.27 Total: 7.25 kcal Atomic # 6 Polarization: -25.21 SS G_CDS: -1.58 Total: -26.79 kcal Atomic # 7 Polarization: -24.74 SS G_CDS: 0.77 Total: -23.96 kcal Atomic # 8 Polarization: -7.06 SS G_CDS: -0.34 Total: -7.40 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.04 Total: -2.68 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -3.69 Total: 16.13 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -26.39 -6.51 -32.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000171711.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.641 kcal (2) G-P(sol) polarization free energy of solvation -26.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds