Wall clock time and date at job start Tue Mar 31 2020 02:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47066 * 2 1 4 4 C 1.53003 * 109.49262 * 63.18593 * 3 2 1 5 5 C 1.53093 * 109.47849 * 183.21147 * 3 2 1 6 6 C 1.53179 * 109.16399 * 177.59020 * 5 3 2 7 7 C 1.50695 * 109.61602 * 62.93015 * 6 5 3 8 8 H 1.07999 * 120.00491 * 265.23120 * 7 6 5 9 9 C 1.37884 * 119.99959 * 85.22553 * 7 6 5 10 10 N 1.31513 * 120.00227 * 169.05519 * 9 7 6 11 11 Si 1.86804 * 119.99870 * 349.06267 * 9 7 6 12 12 H 1.48499 * 109.47160 * 84.33970 * 11 9 7 13 13 H 1.48503 * 109.46940 * 204.34280 * 11 9 7 14 14 H 1.48506 * 109.46594 * 324.34049 * 11 9 7 15 15 C 1.50700 * 109.54598 * 183.15622 * 6 5 3 16 16 C 1.38244 * 119.97149 * 186.83870 * 15 6 5 17 17 C 1.38207 * 120.02179 * 179.97438 * 16 15 6 18 18 C 1.38459 * 119.97341 * 0.22913 * 17 16 15 19 19 F 1.35101 * 120.02633 * 179.73012 * 18 17 16 20 20 C 1.38458 * 119.94756 * 359.49246 * 18 17 16 21 21 C 1.38197 * 119.97480 * 0.53208 * 20 18 17 22 22 C 1.53179 * 109.03483 * 303.02383 * 6 5 3 23 23 C 1.53092 * 109.16579 * 56.97764 * 22 6 5 24 24 O 1.42901 * 109.48025 * 303.15315 * 3 2 1 25 25 H 1.08996 * 109.47375 * 304.52769 * 1 2 3 26 26 H 1.09001 * 109.46895 * 64.52781 * 1 2 3 27 27 H 1.09005 * 109.47130 * 184.52336 * 1 2 3 28 28 H 1.08999 * 109.47099 * 239.99767 * 2 1 3 29 29 H 1.09004 * 109.46736 * 120.00044 * 2 1 3 30 30 H 1.09004 * 109.46690 * 322.62452 * 4 3 2 31 31 H 1.08995 * 109.46905 * 82.62147 * 4 3 2 32 32 H 1.08994 * 109.47063 * 202.62069 * 4 3 2 33 33 H 1.09004 * 109.52088 * 57.69100 * 5 3 2 34 34 H 1.08996 * 109.52529 * 297.50012 * 5 3 2 35 35 H 0.97000 * 120.00175 * 180.02562 * 10 9 7 36 36 H 1.07992 * 119.99429 * 359.97088 * 16 15 6 37 37 H 1.07993 * 120.00997 * 179.97438 * 17 16 15 38 38 H 1.08007 * 120.01553 * 180.25666 * 20 18 17 39 39 H 1.08007 * 119.98610 * 179.74455 * 21 20 18 40 40 H 1.08997 * 109.52186 * 176.88690 * 22 6 5 41 41 H 1.09003 * 109.52308 * 297.07168 * 22 6 5 42 42 H 1.09004 * 109.47976 * 62.37557 * 23 22 6 43 43 H 1.09000 * 109.47975 * 182.39653 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5967 2.1407 1.2873 5 6 3.5687 1.4434 -0.0809 6 6 4.0682 2.8903 -0.1412 7 6 3.6901 3.6093 1.1281 8 1 2.7828 4.1937 1.1680 9 6 4.5026 3.5210 2.2386 10 7 4.2952 4.3107 3.2696 11 14 5.8981 2.2799 2.2786 12 1 7.0922 2.8559 1.6096 13 1 6.2300 1.9534 3.6888 14 1 5.4814 1.0435 1.5692 15 6 5.5669 2.9001 -0.2989 16 6 6.2602 4.0944 -0.2349 17 6 7.6347 4.1046 -0.3790 18 6 8.3167 2.9187 -0.5922 19 9 9.6597 2.9280 -0.7386 20 6 7.6218 1.7225 -0.6504 21 6 6.2473 1.7148 -0.5066 22 6 3.4221 3.5923 -1.3396 23 6 1.8990 3.5083 -1.2101 24 8 1.5042 2.1373 -1.1279 25 1 -0.3634 0.5825 0.8466 26 1 -0.3633 0.4420 -0.9278 27 1 -0.3634 -1.0245 0.0811 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 0.5940 1.8072 1.5547 31 1 2.2888 1.8926 2.0919 32 1 1.5915 3.2195 1.1321 33 1 3.8864 0.9108 -0.9773 34 1 3.9805 0.9524 0.8008 35 1 4.8670 4.2488 4.0507 36 1 5.7277 5.0198 -0.0723 37 1 8.1761 5.0377 -0.3293 38 1 8.1531 0.7963 -0.8125 39 1 5.7046 0.7823 -0.5560 40 1 3.7290 4.6380 -1.3580 41 1 3.7368 3.1030 -2.2614 42 1 1.5813 4.0327 -0.3088 43 1 1.4341 3.9690 -2.0817 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000171711.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:31 Heat of formation + Delta-G solvation = -62.713938 kcal Electronic energy + Delta-G solvation = -25507.370909 eV Core-core repulsion = 22046.149596 eV Total energy + Delta-G solvation = -3461.221314 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.158 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.89206 -41.75069 -39.81931 -36.09012 -35.19487 -33.79315 -32.17702 -30.84830 -30.69156 -28.51863 -27.61377 -24.95992 -24.69725 -23.33181 -23.03233 -20.96796 -20.13487 -18.71213 -18.42736 -17.31135 -17.12205 -16.91853 -16.66663 -16.42975 -15.80631 -15.43849 -14.92267 -14.86249 -14.80134 -14.55483 -14.39268 -14.32773 -14.12716 -13.82492 -13.74394 -13.02319 -12.75816 -12.71217 -12.45516 -12.32898 -12.06180 -11.97136 -11.81794 -11.70893 -11.49149 -11.35726 -11.12504 -10.89346 -10.65358 -10.35625 -10.00239 -9.89184 -9.25685 -8.15637 -6.10396 0.21454 0.34089 1.41516 1.44306 1.53752 2.45148 2.70692 3.09264 3.18121 3.31494 3.82106 3.86045 3.97785 4.14229 4.18783 4.30611 4.41687 4.43447 4.50179 4.55344 4.57376 4.64958 4.75355 4.87522 4.90577 4.96340 5.01914 5.07746 5.14296 5.15439 5.20116 5.20968 5.24944 5.25627 5.37354 5.43290 5.48911 5.56005 5.60454 5.76787 5.88893 5.90445 6.03105 6.42926 6.63143 6.86064 7.48913 8.95077 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.019213 B = 0.006907 C = 0.006362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.964501 B = 4052.908442 C = 4400.172398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.109 4.109 3 C 0.129 3.871 4 C -0.157 4.157 5 C -0.137 4.137 6 C 0.075 3.925 7 C -0.474 4.474 8 H 0.063 0.937 9 C 0.043 3.957 10 N -0.941 5.941 11 Si 0.879 3.121 12 H -0.248 1.248 13 H -0.341 1.341 14 H -0.226 1.226 15 C -0.080 4.080 16 C -0.072 4.072 17 C -0.161 4.161 18 C 0.072 3.928 19 F -0.148 7.148 20 C -0.161 4.161 21 C -0.111 4.111 22 C -0.121 4.121 23 C 0.064 3.936 24 O -0.384 6.384 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.044 0.956 31 H 0.041 0.959 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.255 0.745 36 H 0.128 0.872 37 H 0.143 0.857 38 H 0.154 0.846 39 H 0.146 0.854 40 H 0.065 0.935 41 H 0.061 0.939 42 H 0.045 0.955 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.280 -6.234 -9.618 11.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.146 4.146 3 C 0.090 3.910 4 C -0.213 4.213 5 C -0.175 4.175 6 C 0.074 3.926 7 C -0.511 4.511 8 H 0.081 0.919 9 C -0.154 4.154 10 N -0.581 5.581 11 Si 0.710 3.290 12 H -0.172 1.172 13 H -0.273 1.273 14 H -0.150 1.150 15 C -0.080 4.080 16 C -0.090 4.090 17 C -0.179 4.179 18 C 0.053 3.947 19 F -0.127 7.127 20 C -0.180 4.180 21 C -0.129 4.129 22 C -0.159 4.159 23 C -0.013 4.013 24 O -0.304 6.304 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.146 0.854 37 H 0.161 0.839 38 H 0.172 0.828 39 H 0.164 0.836 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.063 0.937 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.290 -6.271 -9.616 11.484 hybrid contribution 1.377 0.070 1.180 1.814 sum 1.087 -6.201 -8.437 10.527 Atomic orbital electron populations 1.21703 0.94717 1.01653 1.01947 1.21545 0.97321 0.93322 1.02405 1.21303 0.91834 0.92312 0.85559 1.22637 0.98864 1.02424 0.97424 1.22593 0.96110 0.98110 1.00674 1.17595 0.86904 0.93399 0.94669 1.21040 1.07646 1.28345 0.94093 0.91871 1.25369 0.98541 0.95954 0.95570 1.70025 1.41243 1.39344 1.07506 0.87224 0.83657 0.83862 0.74265 1.17234 1.27315 1.15004 1.20330 0.98028 0.92875 0.96808 1.20923 0.92759 0.99110 0.96218 1.21274 0.95213 0.97766 1.03673 1.17787 0.76799 0.95425 1.04694 1.91435 1.30201 1.97486 1.93606 1.21272 0.94922 0.97519 1.04282 1.21286 0.93591 0.99183 0.98796 1.22016 0.96240 1.00642 0.97017 1.22565 0.94191 0.83128 1.01383 1.87787 1.72531 1.23366 1.46713 0.93097 0.92641 0.91536 0.90971 0.90879 0.93721 0.94010 0.91229 0.91999 0.92318 0.93568 0.85381 0.83883 0.82828 0.83635 0.91648 0.92048 0.93686 0.87951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.64 9.53 71.98 0.69 -2.95 16 2 C -0.11 -3.09 5.19 30.59 0.16 -2.93 16 3 C 0.13 4.45 0.79 -10.76 -0.01 4.44 16 4 C -0.16 -6.13 7.26 71.98 0.52 -5.61 16 5 C -0.14 -4.96 2.41 30.69 0.07 -4.88 16 6 C 0.08 2.92 0.35 -53.56 -0.02 2.90 16 7 C -0.47 -22.40 4.71 25.60 0.12 -22.28 16 8 H 0.06 3.31 5.07 -2.91 -0.01 3.29 16 9 C 0.04 2.24 4.85 84.66 0.41 2.65 16 10 N -0.94 -54.71 13.96 21.45 0.30 -54.41 16 11 Si 0.88 41.04 21.70 68.60 1.49 42.53 16 12 H -0.25 -11.12 3.81 99.48 0.38 -10.74 16 13 H -0.34 -17.75 7.11 99.48 0.71 -17.05 16 14 H -0.23 -9.42 4.06 99.48 0.40 -9.02 16 15 C -0.08 -3.03 2.31 -19.86 -0.05 -3.07 16 16 C -0.07 -2.74 7.01 22.26 0.16 -2.58 16 17 C -0.16 -5.60 9.13 22.32 0.20 -5.39 16 18 C 0.07 2.45 6.66 22.37 0.15 2.60 16 19 F -0.15 -4.86 17.27 44.97 0.78 -4.09 16 20 C -0.16 -5.16 9.31 22.31 0.21 -4.95 16 21 C -0.11 -3.79 5.83 22.26 0.13 -3.66 16 22 C -0.12 -4.18 4.75 30.68 0.15 -4.03 16 23 C 0.06 2.11 6.43 72.01 0.46 2.58 16 24 O -0.38 -13.19 9.52 -148.98 -1.42 -14.61 16 25 H 0.05 1.36 5.99 -2.39 -0.01 1.34 16 26 H 0.05 1.45 7.75 -2.39 -0.02 1.43 16 27 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 28 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.04 1.57 5.73 -2.39 -0.01 1.55 16 31 H 0.04 1.84 7.01 -2.39 -0.02 1.82 16 32 H 0.07 3.01 3.27 -2.39 -0.01 3.00 16 33 H 0.06 2.01 7.00 -2.38 -0.02 2.00 16 34 H 0.06 2.28 4.95 -2.39 -0.01 2.27 16 35 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 36 H 0.13 5.06 7.86 -2.91 -0.02 5.04 16 37 H 0.14 4.35 8.06 -2.91 -0.02 4.32 16 38 H 0.15 3.96 8.06 -2.91 -0.02 3.93 16 39 H 0.15 4.52 5.71 -2.91 -0.02 4.50 16 40 H 0.06 2.25 8.00 -2.39 -0.02 2.23 16 41 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.05 1.68 4.99 -2.39 -0.01 1.66 16 43 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 Total: -1.00 -57.25 302.39 4.89 -52.36 By element: Atomic # 1 Polarization: 25.01 SS G_CDS: 0.39 Total: 25.40 kcal Atomic # 6 Polarization: -50.54 SS G_CDS: 3.35 Total: -47.18 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: 0.30 Total: -54.41 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -1.42 Total: -14.61 kcal Atomic # 9 Polarization: -4.86 SS G_CDS: 0.78 Total: -4.09 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 1.49 Total: 42.53 kcal Total: -57.25 4.89 -52.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000171711.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.357 kcal (2) G-P(sol) polarization free energy of solvation -57.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds