Wall clock time and date at job start Tue Mar 31 2020 02:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35131 * 125.61933 * 2 1 4 4 C 1.40364 * 107.11613 * 180.02562 * 3 2 1 5 5 C 1.36543 * 106.70661 * 359.97438 * 4 3 2 6 6 C 1.46661 * 125.98188 * 179.97438 * 5 4 3 7 7 O 1.21691 * 120.00459 * 0.02562 * 6 5 4 8 8 N 1.34781 * 119.99370 * 179.97438 * 6 5 4 9 9 C 1.46497 * 119.99759 * 179.97438 * 8 6 5 10 10 C 1.53118 * 109.52553 * 205.00273 * 9 8 6 11 11 C 1.53034 * 109.28107 * 182.44372 * 10 9 8 12 12 N 1.46843 * 109.52442 * 59.17558 * 11 10 9 13 13 C 1.46905 * 110.99761 * 174.16181 * 12 11 10 14 14 C 1.50699 * 109.47271 * 64.89139 * 13 12 11 15 15 H 1.08007 * 119.99911 * 354.99568 * 14 13 12 16 16 C 1.37872 * 120.00416 * 174.99052 * 14 13 12 17 17 N 1.31519 * 119.99884 * 0.02562 * 16 14 13 18 18 Si 1.86792 * 120.00436 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47056 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47310 * 120.00268 * 18 16 14 21 21 H 1.48495 * 109.47575 * 240.00359 * 18 16 14 22 22 C 1.46839 * 111.19748 * 298.25867 * 12 11 10 23 23 C 1.53040 * 109.52311 * 61.74564 * 22 12 11 24 24 O 1.33937 * 125.61499 * 180.32369 * 2 1 3 25 25 H 1.09000 * 109.47216 * 89.99878 * 1 2 3 26 26 H 1.08993 * 109.47434 * 210.00419 * 1 2 3 27 27 H 1.09004 * 109.47253 * 330.00243 * 1 2 3 28 28 H 1.08001 * 126.43817 * 0.03072 * 3 2 1 29 29 H 1.08001 * 126.64380 * 179.97438 * 4 3 2 30 30 H 0.96999 * 120.00518 * 0.02562 * 8 6 5 31 31 H 1.09005 * 109.52386 * 325.12949 * 9 8 6 32 32 H 1.09001 * 109.50200 * 62.49837 * 10 9 8 33 33 H 1.09000 * 109.50265 * 302.38398 * 10 9 8 34 34 H 1.09007 * 109.45987 * 299.16005 * 11 10 9 35 35 H 1.09006 * 109.45391 * 179.19229 * 11 10 9 36 36 H 1.08996 * 109.47063 * 304.89113 * 13 12 11 37 37 H 1.08998 * 109.47134 * 184.89206 * 13 12 11 38 38 H 0.97000 * 120.00316 * 179.97438 * 17 16 14 39 39 H 1.09009 * 109.45885 * 181.75893 * 22 12 11 40 40 H 1.08994 * 109.46666 * 301.72295 * 22 12 11 41 41 H 1.09007 * 109.50397 * 180.87673 * 23 22 12 42 42 H 1.08992 * 109.50553 * 60.76129 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2940 1.0985 0.0000 4 6 3.6251 0.6530 -0.0006 5 6 3.5822 -0.7117 -0.0004 6 6 4.7414 -1.6102 -0.0013 7 8 5.8680 -1.1501 -0.0020 8 7 4.5589 -2.9456 -0.0004 9 6 5.7167 -3.8431 -0.0020 10 6 5.3189 -5.1906 -0.6107 11 6 6.5149 -6.1436 -0.5538 12 7 6.9347 -6.3216 0.8420 13 6 7.9913 -7.3366 0.9486 14 6 9.2274 -6.8518 0.2359 15 1 9.2035 -5.9237 -0.3161 16 6 10.3889 -7.5928 0.2885 17 7 10.4180 -8.7231 0.9603 18 14 11.9209 -6.9922 -0.5955 19 1 11.6281 -5.7038 -1.2736 20 1 13.0154 -6.7954 0.3888 21 1 12.3374 -7.9993 -1.6041 22 6 7.3663 -5.0486 1.4331 23 6 6.1956 -4.0629 1.4357 24 8 2.2869 -1.0888 -0.0062 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 1.9613 2.1260 0.0005 29 1 4.5113 1.2702 -0.0011 30 1 3.6609 -3.3124 0.0005 31 1 6.5201 -3.4004 -0.5909 32 1 5.0173 -5.0464 -1.6482 33 1 4.4888 -5.6144 -0.0454 34 1 7.3400 -5.7257 -1.1308 35 1 6.2304 -7.1086 -0.9735 36 1 7.6498 -8.2658 0.4924 37 1 8.2227 -7.5113 1.9993 38 1 11.2350 -9.2446 0.9970 39 1 7.7005 -5.2183 2.4567 40 1 8.1874 -4.6359 0.8469 41 1 6.5206 -3.1130 1.8602 42 1 5.3794 -4.4689 2.0331 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051097897.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:16 Heat of formation + Delta-G solvation = -28.797974 kcal Electronic energy + Delta-G solvation = -23077.598182 eV Core-core repulsion = 19637.767537 eV Total energy + Delta-G solvation = -3439.830645 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.94803 -39.79650 -38.00114 -35.04076 -33.59654 -32.76355 -32.28934 -30.93978 -30.30614 -27.71175 -26.33001 -24.00839 -22.62824 -22.37889 -21.84103 -21.08766 -20.32497 -19.48422 -18.23918 -16.72736 -16.41195 -16.17949 -15.72782 -15.05373 -14.73701 -14.43963 -14.22005 -14.02251 -13.63438 -13.43538 -13.41637 -13.24820 -13.14908 -12.96274 -12.73249 -12.29219 -12.03475 -11.82108 -11.10577 -11.00660 -10.87816 -10.68294 -10.53542 -10.45237 -10.29077 -10.19843 -10.00939 -9.78701 -9.53183 -9.06015 -8.69472 -8.43033 -7.18465 -6.02413 -4.11632 0.84254 2.06433 2.35991 3.09377 3.12897 3.27574 3.35934 3.40273 4.28246 4.41694 4.62360 4.63961 4.92591 4.96699 4.99063 5.08269 5.22348 5.24661 5.28277 5.38913 5.52107 5.56089 5.68276 5.73940 5.88590 5.97704 6.05548 6.09780 6.27933 6.28973 6.44400 6.47964 6.59207 6.68956 6.73381 6.88012 7.28455 7.43664 7.52946 7.90089 8.03435 8.05924 8.29290 8.29661 8.99067 9.55624 11.02534 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.034200 B = 0.002916 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.525676 B = 9599.026427 C =10040.364518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.015 3.985 3 C -0.224 4.224 4 C -0.120 4.120 5 C -0.076 4.076 6 C 0.600 3.400 7 O -0.518 6.518 8 N -0.712 5.712 9 C 0.144 3.856 10 C -0.121 4.121 11 C 0.066 3.934 12 N -0.543 5.543 13 C 0.187 3.813 14 C -0.549 4.549 15 H 0.058 0.942 16 C 0.064 3.936 17 N -0.891 5.891 18 Si 0.888 3.112 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.283 1.283 22 C 0.068 3.932 23 C -0.124 4.124 24 O -0.163 6.163 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.092 0.908 28 H 0.155 0.845 29 H 0.160 0.840 30 H 0.402 0.598 31 H 0.088 0.912 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.040 0.960 35 H 0.071 0.929 36 H 0.028 0.972 37 H 0.035 0.965 38 H 0.262 0.738 39 H 0.069 0.931 40 H 0.042 0.958 41 H 0.062 0.938 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.530 16.263 -2.141 26.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.038 4.038 3 C -0.243 4.243 4 C -0.141 4.141 5 C -0.128 4.128 6 C 0.385 3.615 7 O -0.396 6.396 8 N -0.361 5.361 9 C 0.040 3.960 10 C -0.160 4.160 11 C -0.063 4.063 12 N -0.267 5.267 13 C 0.061 3.939 14 C -0.588 4.588 15 H 0.076 0.924 16 C -0.138 4.138 17 N -0.530 5.530 18 Si 0.716 3.284 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.210 1.210 22 C -0.062 4.062 23 C -0.163 4.163 24 O -0.059 6.059 25 H 0.104 0.896 26 H 0.099 0.901 27 H 0.110 0.890 28 H 0.173 0.827 29 H 0.178 0.822 30 H 0.237 0.763 31 H 0.106 0.894 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.058 0.942 35 H 0.089 0.911 36 H 0.046 0.954 37 H 0.053 0.947 38 H 0.071 0.929 39 H 0.087 0.913 40 H 0.060 0.940 41 H 0.081 0.919 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -20.085 15.928 -1.827 25.699 hybrid contribution 1.329 0.582 -0.921 1.719 sum -18.756 16.510 -2.749 25.138 Atomic orbital electron populations 1.20409 0.84570 1.04514 1.03945 1.22818 0.94290 0.84139 1.02512 1.21592 0.92380 0.99790 1.10523 1.21964 0.98638 0.93033 1.00465 1.22187 0.81815 0.94768 1.14036 1.16573 0.85949 0.81789 0.77146 1.90904 1.21946 1.76085 1.50665 1.46103 1.10940 1.05241 1.73813 1.21228 0.87418 0.89297 0.98025 1.21919 1.00121 0.93921 1.00016 1.21797 0.94904 0.98044 0.91584 1.62486 1.40542 1.08275 1.15378 1.19749 0.86664 0.89785 0.97688 1.21800 0.96729 1.07551 1.32740 0.92415 1.24962 0.98800 0.94826 0.95217 1.69954 1.27892 1.13787 1.41336 0.86602 0.83330 0.78872 0.79624 1.19790 1.20923 1.20958 1.21794 0.94500 0.89677 1.00195 1.22016 0.99557 0.99331 0.95412 1.84001 1.16051 1.34972 1.70867 0.89601 0.90104 0.88971 0.82708 0.82217 0.76325 0.89393 0.91810 0.91077 0.94174 0.91104 0.95394 0.94665 0.92871 0.91252 0.93996 0.91921 0.91553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.34 10.41 36.00 0.37 0.04 16 2 C 0.01 0.13 7.31 -35.41 -0.26 -0.13 16 3 C -0.22 -1.96 10.77 -39.89 -0.43 -2.39 16 4 C -0.12 -1.35 10.62 -39.39 -0.42 -1.77 16 5 C -0.08 -0.95 7.13 -36.80 -0.26 -1.22 16 6 C 0.60 8.78 7.76 -12.86 -0.10 8.68 16 7 O -0.52 -9.32 16.53 5.20 0.09 -9.24 16 8 N -0.71 -9.32 5.08 -55.00 -0.28 -9.60 16 9 C 0.14 2.19 2.52 -67.81 -0.17 2.02 16 10 C -0.12 -1.76 5.57 -26.65 -0.15 -1.91 16 11 C 0.07 1.23 5.12 -3.84 -0.02 1.21 16 12 N -0.54 -11.46 4.86 -236.12 -1.15 -12.60 16 13 C 0.19 4.77 5.12 -4.97 -0.03 4.75 16 14 C -0.55 -15.07 7.72 -34.44 -0.27 -15.34 16 15 H 0.06 1.58 5.86 -52.48 -0.31 1.28 16 16 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 17 N -0.89 -26.24 13.29 55.43 0.74 -25.51 16 18 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 19 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 C 0.07 1.34 5.03 -3.84 -0.02 1.32 16 23 C -0.12 -2.04 5.67 -26.65 -0.15 -2.19 16 24 O -0.16 -1.77 10.40 4.99 0.05 -1.72 16 25 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.16 0.93 8.06 -52.49 -0.42 0.51 16 29 H 0.16 1.68 8.06 -52.49 -0.42 1.25 16 30 H 0.40 4.31 8.36 -40.82 -0.34 3.96 16 31 H 0.09 1.53 7.58 -51.93 -0.39 1.14 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.04 0.82 6.86 -51.93 -0.36 0.47 16 35 H 0.07 1.31 8.08 -51.93 -0.42 0.89 16 36 H 0.03 0.76 8.08 -51.93 -0.42 0.34 16 37 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.07 1.41 8.12 -51.92 -0.42 0.98 16 40 H 0.04 0.92 6.73 -51.93 -0.35 0.57 16 41 H 0.06 1.05 8.14 -51.92 -0.42 0.62 16 42 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 346.44 15.07 5.22 5.22 Total: -1.00 -31.81 346.44 -8.72 -40.52 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -6.37 Total: 1.50 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -1.99 Total: -5.21 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: -0.69 Total: -47.70 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.14 Total: -10.95 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.81 -8.72 -40.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051097897.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.727 kcal (2) G-P(sol) polarization free energy of solvation -31.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds