Wall clock time and date at job start Tue Mar 31 2020 02:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35131 * 125.61933 * 2 1 4 4 C 1.40364 * 107.11613 * 180.02562 * 3 2 1 5 5 C 1.36543 * 106.70661 * 359.97438 * 4 3 2 6 6 C 1.46661 * 125.98188 * 179.97438 * 5 4 3 7 7 O 1.21691 * 120.00459 * 0.02562 * 6 5 4 8 8 N 1.34781 * 119.99370 * 179.97438 * 6 5 4 9 9 C 1.46497 * 119.99759 * 179.97438 * 8 6 5 10 10 C 1.53118 * 109.52553 * 205.00273 * 9 8 6 11 11 C 1.53034 * 109.28107 * 182.44372 * 10 9 8 12 12 N 1.46843 * 109.52442 * 59.17558 * 11 10 9 13 13 C 1.46905 * 110.99761 * 174.16181 * 12 11 10 14 14 C 1.50699 * 109.47271 * 64.89139 * 13 12 11 15 15 H 1.08007 * 119.99911 * 354.99568 * 14 13 12 16 16 C 1.37872 * 120.00416 * 174.99052 * 14 13 12 17 17 N 1.31519 * 119.99884 * 0.02562 * 16 14 13 18 18 Si 1.86792 * 120.00436 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47056 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47310 * 120.00268 * 18 16 14 21 21 H 1.48495 * 109.47575 * 240.00359 * 18 16 14 22 22 C 1.46839 * 111.19748 * 298.25867 * 12 11 10 23 23 C 1.53040 * 109.52311 * 61.74564 * 22 12 11 24 24 O 1.33937 * 125.61499 * 180.32369 * 2 1 3 25 25 H 1.09000 * 109.47216 * 89.99878 * 1 2 3 26 26 H 1.08993 * 109.47434 * 210.00419 * 1 2 3 27 27 H 1.09004 * 109.47253 * 330.00243 * 1 2 3 28 28 H 1.08001 * 126.43817 * 0.03072 * 3 2 1 29 29 H 1.08001 * 126.64380 * 179.97438 * 4 3 2 30 30 H 0.96999 * 120.00518 * 0.02562 * 8 6 5 31 31 H 1.09005 * 109.52386 * 325.12949 * 9 8 6 32 32 H 1.09001 * 109.50200 * 62.49837 * 10 9 8 33 33 H 1.09000 * 109.50265 * 302.38398 * 10 9 8 34 34 H 1.09007 * 109.45987 * 299.16005 * 11 10 9 35 35 H 1.09006 * 109.45391 * 179.19229 * 11 10 9 36 36 H 1.08996 * 109.47063 * 304.89113 * 13 12 11 37 37 H 1.08998 * 109.47134 * 184.89206 * 13 12 11 38 38 H 0.97000 * 120.00316 * 179.97438 * 17 16 14 39 39 H 1.09009 * 109.45885 * 181.75893 * 22 12 11 40 40 H 1.08994 * 109.46666 * 301.72295 * 22 12 11 41 41 H 1.09007 * 109.50397 * 180.87673 * 23 22 12 42 42 H 1.08992 * 109.50553 * 60.76129 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2940 1.0985 0.0000 4 6 3.6251 0.6530 -0.0006 5 6 3.5822 -0.7117 -0.0004 6 6 4.7414 -1.6102 -0.0013 7 8 5.8680 -1.1501 -0.0020 8 7 4.5589 -2.9456 -0.0004 9 6 5.7167 -3.8431 -0.0020 10 6 5.3189 -5.1906 -0.6107 11 6 6.5149 -6.1436 -0.5538 12 7 6.9347 -6.3216 0.8420 13 6 7.9913 -7.3366 0.9486 14 6 9.2274 -6.8518 0.2359 15 1 9.2035 -5.9237 -0.3161 16 6 10.3889 -7.5928 0.2885 17 7 10.4180 -8.7231 0.9603 18 14 11.9209 -6.9922 -0.5955 19 1 11.6281 -5.7038 -1.2736 20 1 13.0154 -6.7954 0.3888 21 1 12.3374 -7.9993 -1.6041 22 6 7.3663 -5.0486 1.4331 23 6 6.1956 -4.0629 1.4357 24 8 2.2869 -1.0888 -0.0062 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 1.9613 2.1260 0.0005 29 1 4.5113 1.2702 -0.0011 30 1 3.6609 -3.3124 0.0005 31 1 6.5201 -3.4004 -0.5909 32 1 5.0173 -5.0464 -1.6482 33 1 4.4888 -5.6144 -0.0454 34 1 7.3400 -5.7257 -1.1308 35 1 6.2304 -7.1086 -0.9735 36 1 7.6498 -8.2658 0.4924 37 1 8.2227 -7.5113 1.9993 38 1 11.2350 -9.2446 0.9970 39 1 7.7005 -5.2183 2.4567 40 1 8.1874 -4.6359 0.8469 41 1 6.5206 -3.1130 1.8602 42 1 5.3794 -4.4689 2.0331 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051097897.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:15 Heat of formation + Delta-G solvation = -50.969679 kcal Electronic energy + Delta-G solvation = -23078.559619 eV Core-core repulsion = 19637.767537 eV Total energy + Delta-G solvation = -3440.792083 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.71770 -41.02538 -39.49320 -36.49484 -34.77661 -34.24149 -33.12451 -32.32840 -31.77779 -28.88362 -27.86631 -25.60141 -24.10490 -23.64045 -22.67718 -22.47985 -21.33696 -20.88249 -19.36766 -18.42217 -17.54005 -17.45827 -16.91770 -16.50752 -15.98982 -15.87123 -15.76750 -15.39346 -14.91191 -14.53549 -14.44622 -14.15797 -14.03043 -13.99302 -13.81077 -13.69533 -13.39800 -12.97073 -12.89827 -12.77055 -12.45416 -12.39049 -12.17703 -12.09943 -11.74920 -11.63266 -11.56090 -11.22441 -11.06215 -10.62361 -10.26184 -9.47564 -9.05787 -8.17328 -6.36620 -0.02897 1.33370 1.33501 1.35457 1.46844 1.53754 2.05921 2.10962 2.35380 3.07284 3.34003 3.56234 3.73681 3.87136 3.90402 3.94947 4.16967 4.30223 4.50927 4.54087 4.55483 4.61386 4.64758 4.73650 4.75270 4.83962 4.87606 4.94878 5.00932 5.05604 5.14609 5.17659 5.24335 5.30162 5.32339 5.39991 5.45891 5.73228 5.83945 6.03295 6.22772 6.41327 6.52261 6.84476 6.97774 7.34853 8.85013 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.034200 B = 0.002916 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.525676 B = 9599.026427 C =10040.364518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.026 3.974 3 C -0.231 4.231 4 C -0.122 4.122 5 C -0.108 4.108 6 C 0.600 3.400 7 O -0.563 6.563 8 N -0.698 5.698 9 C 0.151 3.849 10 C -0.106 4.106 11 C 0.064 3.936 12 N -0.537 5.537 13 C 0.199 3.801 14 C -0.557 4.557 15 H 0.053 0.947 16 C 0.013 3.987 17 N -0.924 5.924 18 Si 0.954 3.046 19 H -0.272 1.272 20 H -0.278 1.278 21 H -0.275 1.275 22 C 0.071 3.929 23 C -0.111 4.111 24 O -0.169 6.169 25 H 0.102 0.898 26 H 0.087 0.913 27 H 0.115 0.885 28 H 0.184 0.816 29 H 0.159 0.841 30 H 0.417 0.583 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.017 0.983 35 H 0.072 0.928 36 H 0.010 0.990 37 H 0.008 0.992 38 H 0.265 0.735 39 H 0.059 0.941 40 H 0.016 0.984 41 H 0.059 0.941 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.096 17.829 -2.892 29.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.027 4.027 3 C -0.250 4.250 4 C -0.143 4.143 5 C -0.160 4.160 6 C 0.388 3.612 7 O -0.444 6.444 8 N -0.348 5.348 9 C 0.046 3.954 10 C -0.144 4.144 11 C -0.065 4.065 12 N -0.261 5.261 13 C 0.072 3.928 14 C -0.596 4.596 15 H 0.071 0.929 16 C -0.187 4.187 17 N -0.564 5.564 18 Si 0.779 3.221 19 H -0.196 1.196 20 H -0.203 1.203 21 H -0.200 1.200 22 C -0.058 4.058 23 C -0.150 4.150 24 O -0.065 6.065 25 H 0.121 0.879 26 H 0.106 0.894 27 H 0.133 0.867 28 H 0.201 0.799 29 H 0.176 0.824 30 H 0.254 0.746 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.035 0.965 35 H 0.091 0.909 36 H 0.028 0.972 37 H 0.026 0.974 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.034 0.966 41 H 0.077 0.923 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -22.698 17.490 -2.584 28.771 hybrid contribution 2.003 0.156 -0.672 2.119 sum -20.695 17.646 -3.255 27.391 Atomic orbital electron populations 1.20676 0.81298 1.06037 1.05417 1.23742 0.95942 0.83398 0.99571 1.21940 0.91065 1.01420 1.10579 1.22233 1.00028 0.92790 0.99240 1.21727 0.82090 0.94644 1.17521 1.16817 0.86125 0.82133 0.76157 1.90874 1.23843 1.76846 1.52790 1.45843 1.10933 1.04639 1.73337 1.20954 0.87734 0.89977 0.96689 1.21789 0.98466 0.92088 1.02025 1.21875 0.95904 0.99240 0.89483 1.62437 1.38450 1.07967 1.17236 1.19424 0.87482 0.90424 0.95454 1.22012 0.97661 1.07282 1.32596 0.92883 1.25774 1.01930 0.94972 0.95994 1.70058 1.28924 1.14876 1.42546 0.85567 0.79500 0.78413 0.78582 1.19606 1.20347 1.20025 1.21756 0.95414 0.89708 0.98948 1.21864 0.98426 0.97964 0.96723 1.83988 1.15409 1.35979 1.71142 0.87947 0.89378 0.86651 0.79857 0.82373 0.74557 0.91792 0.89193 0.88990 0.96469 0.90907 0.97218 0.97404 0.92549 0.92261 0.96591 0.92251 0.89950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.36 10.41 71.24 0.74 0.38 16 2 C 0.03 0.37 7.31 24.97 0.18 0.55 16 3 C -0.23 -3.45 10.77 22.07 0.24 -3.21 16 4 C -0.12 -2.62 10.62 22.39 0.24 -2.38 16 5 C -0.11 -2.62 7.13 24.07 0.17 -2.45 16 6 C 0.60 17.45 7.76 86.44 0.67 18.12 16 7 O -0.56 -20.75 16.53 -4.32 -0.07 -20.82 16 8 N -0.70 -17.43 5.08 -446.14 -2.27 -19.70 16 9 C 0.15 4.50 2.52 45.07 0.11 4.62 16 10 C -0.11 -2.87 5.57 30.65 0.17 -2.70 16 11 C 0.06 2.39 5.12 86.33 0.44 2.83 16 12 N -0.54 -23.11 4.86 -900.93 -4.38 -27.48 16 13 C 0.20 10.56 5.12 85.56 0.44 10.99 16 14 C -0.56 -31.43 7.72 25.60 0.20 -31.23 16 15 H 0.05 3.00 5.86 -2.91 -0.02 2.98 16 16 C 0.01 0.73 5.46 84.65 0.46 1.20 16 17 N -0.92 -55.51 13.29 21.45 0.28 -55.22 16 18 Si 0.95 45.04 29.54 68.60 2.03 47.06 16 19 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 20 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 21 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 22 C 0.07 2.90 5.03 86.33 0.43 3.33 16 23 C -0.11 -3.62 5.67 30.65 0.17 -3.45 16 24 O -0.17 -3.32 10.40 -5.05 -0.05 -3.38 16 25 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 26 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 27 H 0.12 0.06 8.14 -2.38 -0.02 0.04 16 28 H 0.18 1.54 8.06 -2.91 -0.02 1.52 16 29 H 0.16 3.31 8.06 -2.91 -0.02 3.29 16 30 H 0.42 7.98 8.36 -92.71 -0.78 7.21 16 31 H 0.06 2.26 7.58 -2.38 -0.02 2.25 16 32 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.02 0.72 6.86 -2.38 -0.02 0.70 16 35 H 0.07 2.67 8.08 -2.38 -0.02 2.65 16 36 H 0.01 0.54 8.08 -2.39 -0.02 0.53 16 37 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 39 H 0.06 2.50 8.12 -2.38 -0.02 2.48 16 40 H 0.02 0.73 6.73 -2.39 -0.02 0.71 16 41 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 42 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -71.16 346.44 0.47 -70.69 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: 0.25 Total: 12.25 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: 4.67 Total: -3.41 kcal Atomic # 7 Polarization: -96.04 SS G_CDS: -6.36 Total: -102.40 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.12 Total: -24.20 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -71.16 0.47 -70.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051097897.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.723 kcal (2) G-P(sol) polarization free energy of solvation -71.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds