Wall clock time and date at job start Tue Mar 31 2020 03:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 114.00271 * 2 1 4 4 C 1.50695 * 109.47270 * 180.02562 * 3 2 1 5 5 C 1.38232 * 120.00040 * 269.72653 * 4 3 2 6 6 C 1.38233 * 120.00147 * 179.77052 * 5 4 3 7 7 C 1.38236 * 120.00053 * 0.50199 * 6 5 4 8 8 C 1.50696 * 120.00403 * 179.72621 * 7 6 5 9 9 N 1.46493 * 109.47487 * 270.02476 * 8 7 6 10 10 C 1.34776 * 120.00244 * 179.97438 * 9 8 7 11 11 O 1.21276 * 119.99886 * 359.97438 * 10 9 8 12 12 C 1.50702 * 119.99729 * 180.02562 * 10 9 8 13 13 N 1.46503 * 109.46743 * 179.97438 * 12 10 9 14 14 C 1.46503 * 119.99882 * 269.99389 * 13 12 10 15 15 C 1.36934 * 120.00539 * 89.99902 * 13 12 10 16 16 H 1.08002 * 119.99994 * 22.34204 * 15 13 12 17 17 C 1.38808 * 120.00400 * 202.35684 * 15 13 12 18 18 N 1.31620 * 119.99765 * 11.42473 * 17 15 13 19 19 Si 1.86799 * 119.99912 * 191.43683 * 17 15 13 20 20 H 1.48501 * 109.47406 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47303 * 119.99641 * 19 17 15 22 22 H 1.48504 * 109.46783 * 239.98841 * 19 17 15 23 23 C 1.38234 * 119.99668 * 359.74878 * 7 6 5 24 24 C 1.38232 * 120.00136 * 0.02562 * 23 7 6 25 25 H 1.09001 * 109.47407 * 59.99823 * 1 2 3 26 26 H 1.09001 * 109.47215 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47222 * 300.00224 * 1 2 3 28 28 H 1.09005 * 109.46708 * 300.00533 * 3 2 1 29 29 H 1.09002 * 109.46814 * 59.99719 * 3 2 1 30 30 H 1.08004 * 119.99944 * 359.97438 * 5 4 3 31 31 H 1.08000 * 120.00146 * 180.23242 * 6 5 4 32 32 H 1.09005 * 109.46616 * 30.02780 * 8 7 6 33 33 H 1.09001 * 109.47294 * 150.02267 * 8 7 6 34 34 H 0.97008 * 119.99663 * 359.97438 * 9 8 7 35 35 H 1.09000 * 109.47018 * 299.99203 * 12 10 9 36 36 H 1.08998 * 109.47838 * 59.99980 * 12 10 9 37 37 H 1.08996 * 109.46899 * 94.12297 * 14 13 12 38 38 H 1.09000 * 109.47403 * 214.12239 * 14 13 12 39 39 H 1.09002 * 109.47168 * 334.12595 * 14 13 12 40 40 H 0.97006 * 120.00011 * 180.02562 * 18 17 15 41 41 H 1.08003 * 120.00408 * 179.97438 * 23 7 6 42 42 H 1.08007 * 120.00270 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1864 -0.0006 5 6 4.2025 1.1373 1.1962 6 6 5.5801 1.0234 1.1956 7 6 6.2687 0.9690 -0.0018 8 6 7.7710 0.8510 -0.0024 9 7 8.3661 2.1896 -0.0024 10 6 9.7063 2.3313 -0.0024 11 8 10.4198 1.3506 -0.0020 12 6 10.3184 3.7085 -0.0018 13 7 11.7789 3.5937 -0.0013 14 6 12.5087 3.5360 1.2677 15 6 12.4620 3.5403 -1.1869 16 1 12.0125 3.9326 -2.0872 17 6 13.7320 2.9819 -1.2318 18 7 14.1903 2.3055 -0.1999 19 14 14.7907 3.1907 -2.7566 20 1 14.0501 3.9862 -3.7684 21 1 16.0466 3.8956 -2.3945 22 1 15.1171 1.8556 -3.3190 23 6 5.5791 1.0233 -1.1986 24 6 4.2011 1.1326 -1.1980 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.6885 1.8464 -0.8900 29 1 1.6886 1.8464 0.8900 30 1 3.6649 1.1847 2.1317 31 1 6.1188 0.9812 2.1307 32 1 8.0933 0.3100 0.8873 33 1 8.0926 0.3104 -0.8926 34 1 7.7954 2.9740 -0.0024 35 1 9.9964 4.2495 -0.8916 36 1 9.9965 4.2488 0.8884 37 1 12.6732 2.4949 1.5452 38 1 13.4695 4.0388 1.1574 39 1 11.9264 4.0315 2.0446 40 1 15.0779 1.9155 -0.2311 41 1 6.1170 0.9812 -2.1342 42 1 3.6624 1.1754 -2.1332 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068971820.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:26 Heat of formation + Delta-G solvation = -26.751145 kcal Electronic energy + Delta-G solvation = -22290.085808 eV Core-core repulsion = 18850.343920 eV Total energy + Delta-G solvation = -3439.741888 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.89018 -38.65947 -37.86757 -35.23283 -34.34403 -32.04743 -31.15070 -31.11820 -28.60039 -27.14942 -26.12749 -25.67975 -24.04748 -22.91054 -21.56211 -20.88339 -19.62009 -17.07114 -16.76326 -16.66187 -16.40317 -16.29458 -15.53329 -15.24905 -14.99708 -14.58369 -14.35310 -14.31588 -13.59476 -13.39510 -13.09594 -12.94241 -12.79970 -12.64955 -12.41209 -12.10433 -11.74260 -11.64349 -11.19754 -11.15445 -11.05084 -10.80997 -10.59956 -10.30424 -10.10541 -9.93791 -9.83750 -9.21006 -9.08205 -8.76091 -8.46929 -8.41469 -6.70041 -5.63769 -3.10126 0.97941 1.24963 3.22099 3.43053 3.49230 3.51975 3.65443 3.76257 4.08814 4.51833 4.53922 4.56799 4.73993 4.83309 4.86602 4.91340 4.97646 5.03670 5.26344 5.31554 5.40305 5.51254 5.63720 5.65779 5.67808 5.86086 5.93236 6.12306 6.19439 6.21929 6.35178 6.35817 6.51665 6.71882 6.79008 6.80026 7.01516 7.44416 7.81832 7.90950 8.18055 8.45943 9.18630 9.29845 9.90752 10.38227 11.41004 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.039248 B = 0.002460 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.240080 B =11379.796494 C =11681.888681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.103 3.897 4 C -0.095 4.095 5 C -0.100 4.100 6 C -0.105 4.105 7 C -0.088 4.088 8 C 0.157 3.843 9 N -0.746 5.746 10 C 0.469 3.531 11 O -0.509 6.509 12 C 0.133 3.867 13 N -0.573 5.573 14 C 0.164 3.836 15 C -0.257 4.257 16 H 0.070 0.930 17 C 0.007 3.993 18 N -0.896 5.896 19 Si 0.906 3.094 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.290 1.290 23 C -0.105 4.105 24 C -0.100 4.100 25 H 0.041 0.959 26 H 0.086 0.914 27 H 0.041 0.959 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.122 0.878 31 H 0.126 0.874 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.392 0.608 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.033 0.967 38 H 0.049 0.951 39 H -0.004 1.004 40 H 0.251 0.749 41 H 0.127 0.873 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.804 0.179 2.068 26.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.305 6.305 3 C 0.027 3.973 4 C -0.095 4.095 5 C -0.118 4.118 6 C -0.124 4.124 7 C -0.088 4.088 8 C 0.033 3.967 9 N -0.403 5.403 10 C 0.253 3.747 11 O -0.380 6.380 12 C 0.000 4.000 13 N -0.293 5.293 14 C 0.019 3.981 15 C -0.387 4.387 16 H 0.088 0.912 17 C -0.193 4.193 18 N -0.540 5.540 19 Si 0.736 3.264 20 H -0.203 1.203 21 H -0.216 1.216 22 H -0.217 1.217 23 C -0.123 4.123 24 C -0.118 4.118 25 H 0.060 0.940 26 H 0.105 0.895 27 H 0.060 0.940 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.140 0.860 31 H 0.144 0.856 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.224 0.776 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.052 0.948 38 H 0.067 0.933 39 H 0.014 0.986 40 H 0.062 0.938 41 H 0.145 0.855 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -25.864 -0.782 2.107 25.961 hybrid contribution -0.056 0.291 -0.822 0.873 sum -25.920 -0.491 1.286 25.957 Atomic orbital electron populations 1.22764 0.80994 1.02907 0.99988 1.87992 1.19587 1.27484 1.95395 1.21352 0.90022 0.85063 1.00873 1.19554 0.93794 1.02428 0.93740 1.21009 0.94164 0.99289 0.97375 1.21115 0.93943 0.99410 0.97925 1.20101 0.95662 0.99718 0.93347 1.20084 0.86977 0.86961 1.02650 1.46676 1.07680 1.06950 1.79016 1.23717 0.80411 0.95567 0.75050 1.90705 1.60382 1.40750 1.46168 1.21021 0.86864 0.91303 1.00796 1.43889 0.97967 1.83450 1.03971 1.20856 0.94081 0.99412 0.83727 1.19195 0.98168 1.33405 0.87906 0.91245 1.25101 0.99383 0.97327 0.97447 1.70113 1.17704 1.36267 1.29912 0.86170 0.80347 0.77306 0.82578 1.20298 1.21601 1.21717 1.21130 0.93938 0.99283 0.97989 1.21016 0.94171 0.99225 0.97390 0.94012 0.89515 0.94022 0.92418 0.92417 0.85971 0.85572 0.91356 0.91297 0.77555 0.90932 0.91541 0.94829 0.93273 0.98563 0.93839 0.85524 0.85955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.68 10.69 -35.23 -0.38 -4.05 16 3 C 0.10 0.82 6.06 36.00 0.22 1.04 16 4 C -0.09 -0.93 5.51 -104.63 -0.58 -1.51 16 5 C -0.10 -0.98 9.70 -39.59 -0.38 -1.37 16 6 C -0.11 -1.13 9.70 -39.58 -0.38 -1.51 16 7 C -0.09 -1.03 5.25 -104.63 -0.55 -1.58 16 8 C 0.16 2.29 5.80 -5.20 -0.03 2.26 16 9 N -0.75 -11.60 5.55 -61.48 -0.34 -11.94 16 10 C 0.47 9.86 7.90 -10.98 -0.09 9.77 16 11 O -0.51 -13.70 16.43 5.56 0.09 -13.60 16 12 C 0.13 2.73 6.19 -5.19 -0.03 2.70 16 13 N -0.57 -15.06 2.41 -182.50 -0.44 -15.50 16 14 C 0.16 4.25 9.01 59.85 0.54 4.79 16 15 C -0.26 -7.36 9.67 -15.06 -0.15 -7.51 16 16 H 0.07 1.92 7.85 -52.49 -0.41 1.51 16 17 C 0.01 0.20 5.13 -17.43 -0.09 0.11 16 18 N -0.90 -27.61 10.59 55.49 0.59 -27.03 16 19 Si 0.91 22.67 29.57 -169.99 -5.03 17.64 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 23 C -0.10 -1.15 9.70 -39.59 -0.38 -1.53 16 24 C -0.10 -0.99 9.70 -39.58 -0.38 -1.38 16 25 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 26 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 28 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 29 H 0.06 0.38 8.08 -51.93 -0.42 -0.04 16 30 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 31 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 32 H 0.07 1.05 8.09 -51.93 -0.42 0.63 16 33 H 0.07 1.09 8.09 -51.93 -0.42 0.67 16 34 H 0.39 4.89 8.46 -40.82 -0.35 4.54 16 35 H 0.07 1.36 8.03 -51.93 -0.42 0.94 16 36 H 0.07 1.16 7.86 -51.93 -0.41 0.75 16 37 H 0.03 0.97 7.42 -51.93 -0.39 0.59 16 38 H 0.05 1.34 7.18 -51.93 -0.37 0.96 16 39 H 0.00 -0.09 7.84 -51.93 -0.41 -0.50 16 40 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 42 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 LS Contribution 358.86 15.07 5.41 5.41 Total: -1.00 -36.25 358.86 -7.80 -44.04 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -6.52 Total: -0.54 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: -1.18 Total: 5.57 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: -0.19 Total: -54.47 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.29 Total: -17.66 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.03 Total: 17.64 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -36.25 -7.80 -44.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068971820.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.291 kcal (2) G-P(sol) polarization free energy of solvation -36.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds