Wall clock time and date at job start Tue Mar 31 2020 03:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 114.00271 * 2 1 4 4 C 1.50695 * 109.47270 * 180.02562 * 3 2 1 5 5 C 1.38232 * 120.00040 * 269.72653 * 4 3 2 6 6 C 1.38233 * 120.00147 * 179.77052 * 5 4 3 7 7 C 1.38236 * 120.00053 * 0.50199 * 6 5 4 8 8 C 1.50696 * 120.00403 * 179.72621 * 7 6 5 9 9 N 1.46493 * 109.47487 * 270.02476 * 8 7 6 10 10 C 1.34776 * 120.00244 * 179.97438 * 9 8 7 11 11 O 1.21276 * 119.99886 * 359.97438 * 10 9 8 12 12 C 1.50702 * 119.99729 * 180.02562 * 10 9 8 13 13 N 1.46503 * 109.46743 * 179.97438 * 12 10 9 14 14 C 1.46503 * 119.99882 * 269.99389 * 13 12 10 15 15 C 1.36934 * 120.00539 * 89.99902 * 13 12 10 16 16 H 1.08002 * 119.99994 * 22.34204 * 15 13 12 17 17 C 1.38808 * 120.00400 * 202.35684 * 15 13 12 18 18 N 1.31620 * 119.99765 * 11.42473 * 17 15 13 19 19 Si 1.86799 * 119.99912 * 191.43683 * 17 15 13 20 20 H 1.48501 * 109.47406 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47303 * 119.99641 * 19 17 15 22 22 H 1.48504 * 109.46783 * 239.98841 * 19 17 15 23 23 C 1.38234 * 119.99668 * 359.74878 * 7 6 5 24 24 C 1.38232 * 120.00136 * 0.02562 * 23 7 6 25 25 H 1.09001 * 109.47407 * 59.99823 * 1 2 3 26 26 H 1.09001 * 109.47215 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47222 * 300.00224 * 1 2 3 28 28 H 1.09005 * 109.46708 * 300.00533 * 3 2 1 29 29 H 1.09002 * 109.46814 * 59.99719 * 3 2 1 30 30 H 1.08004 * 119.99944 * 359.97438 * 5 4 3 31 31 H 1.08000 * 120.00146 * 180.23242 * 6 5 4 32 32 H 1.09005 * 109.46616 * 30.02780 * 8 7 6 33 33 H 1.09001 * 109.47294 * 150.02267 * 8 7 6 34 34 H 0.97008 * 119.99663 * 359.97438 * 9 8 7 35 35 H 1.09000 * 109.47018 * 299.99203 * 12 10 9 36 36 H 1.08998 * 109.47838 * 59.99980 * 12 10 9 37 37 H 1.08996 * 109.46899 * 94.12297 * 14 13 12 38 38 H 1.09000 * 109.47403 * 214.12239 * 14 13 12 39 39 H 1.09002 * 109.47168 * 334.12595 * 14 13 12 40 40 H 0.97006 * 120.00011 * 180.02562 * 18 17 15 41 41 H 1.08003 * 120.00408 * 179.97438 * 23 7 6 42 42 H 1.08007 * 120.00270 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1864 -0.0006 5 6 4.2025 1.1373 1.1962 6 6 5.5801 1.0234 1.1956 7 6 6.2687 0.9690 -0.0018 8 6 7.7710 0.8510 -0.0024 9 7 8.3661 2.1896 -0.0024 10 6 9.7063 2.3313 -0.0024 11 8 10.4198 1.3506 -0.0020 12 6 10.3184 3.7085 -0.0018 13 7 11.7789 3.5937 -0.0013 14 6 12.5087 3.5360 1.2677 15 6 12.4620 3.5403 -1.1869 16 1 12.0125 3.9326 -2.0872 17 6 13.7320 2.9819 -1.2318 18 7 14.1903 2.3055 -0.1999 19 14 14.7907 3.1907 -2.7566 20 1 14.0501 3.9862 -3.7684 21 1 16.0466 3.8956 -2.3945 22 1 15.1171 1.8556 -3.3190 23 6 5.5791 1.0233 -1.1986 24 6 4.2011 1.1326 -1.1980 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.6885 1.8464 -0.8900 29 1 1.6886 1.8464 0.8900 30 1 3.6649 1.1847 2.1317 31 1 6.1188 0.9812 2.1307 32 1 8.0933 0.3100 0.8873 33 1 8.0926 0.3104 -0.8926 34 1 7.7954 2.9740 -0.0024 35 1 9.9964 4.2495 -0.8916 36 1 9.9965 4.2488 0.8884 37 1 12.6732 2.4949 1.5452 38 1 13.4695 4.0388 1.1574 39 1 11.9264 4.0315 2.0446 40 1 15.0779 1.9155 -0.2311 41 1 6.1170 0.9812 -2.1342 42 1 3.6624 1.1754 -2.1332 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068971820.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:25 Heat of formation + Delta-G solvation = -51.848087 kcal Electronic energy + Delta-G solvation = -22291.174093 eV Core-core repulsion = 18850.343920 eV Total energy + Delta-G solvation = -3440.830173 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.85496 -40.11304 -38.57365 -37.09331 -35.78880 -33.39820 -32.93340 -31.90797 -29.80384 -28.37012 -27.84466 -26.90509 -25.05390 -23.70225 -23.42109 -21.79592 -21.24841 -18.82412 -18.20179 -17.42190 -17.28712 -17.10017 -17.06695 -16.49787 -16.25324 -15.86383 -15.70964 -15.25802 -15.13305 -14.82829 -14.62046 -14.34924 -13.80430 -13.67641 -13.58407 -13.20872 -13.10293 -12.98492 -12.81213 -12.51831 -12.31261 -12.20636 -12.02514 -11.96314 -11.94608 -11.83367 -10.92146 -10.64093 -10.56503 -9.96116 -9.85953 -9.74037 -8.78863 -7.80517 -5.29824 0.14790 0.45643 1.44940 1.46697 1.57267 1.98077 2.31665 2.52080 2.76505 3.22396 3.37726 3.66558 3.72802 3.82023 3.98044 4.08892 4.14230 4.31377 4.41448 4.49302 4.50456 4.59428 4.60529 4.64204 4.72590 4.76606 4.77494 4.84238 4.88932 4.98633 5.12764 5.31692 5.38845 5.59670 5.60926 5.62359 5.63516 5.76230 5.99640 6.22011 6.30295 6.79797 7.14690 7.59295 7.86802 8.27421 9.23610 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.039248 B = 0.002460 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.240080 B =11379.796494 C =11681.888681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.414 6.414 3 C 0.101 3.899 4 C -0.097 4.097 5 C -0.102 4.102 6 C -0.109 4.109 7 C -0.098 4.098 8 C 0.163 3.837 9 N -0.720 5.720 10 C 0.472 3.528 11 O -0.576 6.576 12 C 0.128 3.872 13 N -0.594 5.594 14 C 0.179 3.821 15 C -0.261 4.261 16 H 0.078 0.922 17 C -0.059 4.059 18 N -0.936 5.936 19 Si 0.973 3.027 20 H -0.259 1.259 21 H -0.287 1.287 22 H -0.300 1.300 23 C -0.111 4.111 24 C -0.103 4.103 25 H 0.053 0.947 26 H 0.092 0.908 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.142 0.858 31 H 0.132 0.868 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.411 0.589 35 H 0.097 0.903 36 H 0.106 0.894 37 H -0.009 1.009 38 H 0.025 0.975 39 H 0.037 0.963 40 H 0.245 0.755 41 H 0.129 0.871 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.927 1.657 1.567 30.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C 0.026 3.974 4 C -0.097 4.097 5 C -0.120 4.120 6 C -0.127 4.127 7 C -0.099 4.099 8 C 0.039 3.961 9 N -0.376 5.376 10 C 0.257 3.743 11 O -0.454 6.454 12 C -0.003 4.003 13 N -0.314 5.314 14 C 0.034 3.966 15 C -0.392 4.392 16 H 0.096 0.904 17 C -0.254 4.254 18 N -0.582 5.582 19 Si 0.800 3.200 20 H -0.183 1.183 21 H -0.213 1.213 22 H -0.227 1.227 23 C -0.129 4.129 24 C -0.121 4.121 25 H 0.071 0.929 26 H 0.110 0.890 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.160 0.840 31 H 0.150 0.850 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.248 0.752 35 H 0.115 0.885 36 H 0.124 0.876 37 H 0.009 0.991 38 H 0.044 0.956 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.147 0.853 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -29.104 0.750 1.597 29.157 hybrid contribution 0.640 -0.161 -0.628 0.911 sum -28.464 0.589 0.969 28.486 Atomic orbital electron populations 1.22936 0.79311 1.03742 1.01139 1.87938 1.21519 1.28341 1.95655 1.21442 0.88663 0.84919 1.02421 1.19895 0.95146 1.01064 0.93586 1.21254 0.93749 0.98613 0.98425 1.21218 0.94596 0.99239 0.97682 1.19818 0.93629 1.02054 0.94402 1.20001 0.89049 0.85684 1.01359 1.46237 1.06249 1.08534 1.76567 1.23480 0.81701 0.94802 0.74267 1.90699 1.62337 1.42615 1.49711 1.21279 0.83906 0.91265 1.03853 1.44060 1.00434 1.83763 1.03183 1.20560 0.94074 0.96932 0.85066 1.19604 0.98484 1.32122 0.88951 0.90431 1.25965 1.01089 0.97820 1.00508 1.70322 1.17706 1.38099 1.32088 0.85125 0.78676 0.76755 0.79397 1.18315 1.21312 1.22740 1.21212 0.94622 0.99358 0.97722 1.21243 0.93727 0.98693 0.98457 0.92874 0.88965 0.92824 0.90952 0.90836 0.84022 0.85018 0.92489 0.92875 0.75215 0.88495 0.87577 0.99077 0.95634 0.94418 0.94611 0.85326 0.84186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 11.01 113.37 1.25 1.48 16 2 O -0.41 -6.92 10.69 -148.98 -1.59 -8.51 16 3 C 0.10 1.32 6.06 71.23 0.43 1.75 16 4 C -0.10 -1.64 5.51 -19.87 -0.11 -1.75 16 5 C -0.10 -1.75 9.70 22.27 0.22 -1.54 16 6 C -0.11 -2.15 9.70 22.27 0.22 -1.93 16 7 C -0.10 -2.21 5.25 -19.87 -0.10 -2.31 16 8 C 0.16 4.71 5.80 85.63 0.50 5.21 16 9 N -0.72 -21.45 5.55 -466.81 -2.59 -24.04 16 10 C 0.47 19.59 7.90 87.66 0.69 20.29 16 11 O -0.58 -31.85 16.43 -3.02 -0.05 -31.90 16 12 C 0.13 5.00 6.19 85.63 0.53 5.53 16 13 N -0.59 -31.04 2.41 -731.30 -1.76 -32.80 16 14 C 0.18 9.39 9.01 127.77 1.15 10.54 16 15 C -0.26 -14.97 9.67 84.03 0.81 -14.16 16 16 H 0.08 4.21 7.85 -2.91 -0.02 4.18 16 17 C -0.06 -3.51 5.13 84.86 0.44 -3.08 16 18 N -0.94 -59.84 10.59 21.65 0.23 -59.61 16 19 Si 0.97 47.39 29.57 68.60 2.03 49.42 16 20 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 21 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 22 H -0.30 -14.94 7.11 99.48 0.71 -14.23 16 23 C -0.11 -2.25 9.70 22.27 0.22 -2.04 16 24 C -0.10 -1.82 9.70 22.27 0.22 -1.60 16 25 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 26 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.07 0.72 8.09 -2.38 -0.02 0.70 16 29 H 0.07 0.71 8.08 -2.39 -0.02 0.69 16 30 H 0.14 1.83 8.06 -2.91 -0.02 1.80 16 31 H 0.13 2.39 8.06 -2.91 -0.02 2.37 16 32 H 0.06 1.79 8.09 -2.38 -0.02 1.77 16 33 H 0.05 1.72 8.09 -2.39 -0.02 1.70 16 34 H 0.41 9.20 8.46 -92.70 -0.78 8.41 16 35 H 0.10 3.33 8.03 -2.39 -0.02 3.31 16 36 H 0.11 3.30 7.86 -2.39 -0.02 3.29 16 37 H -0.01 -0.56 7.42 -2.39 -0.02 -0.58 16 38 H 0.02 1.41 7.18 -2.39 -0.02 1.39 16 39 H 0.04 1.62 7.84 -2.39 -0.02 1.60 16 40 H 0.24 15.15 8.31 -92.70 -0.77 14.38 16 41 H 0.13 2.50 8.06 -2.91 -0.02 2.47 16 42 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -81.37 358.86 2.93 -78.44 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: 0.22 Total: 12.61 kcal Atomic # 6 Polarization: 9.95 SS G_CDS: 6.45 Total: 16.39 kcal Atomic # 7 Polarization: -112.32 SS G_CDS: -4.13 Total: -116.45 kcal Atomic # 8 Polarization: -38.77 SS G_CDS: -1.64 Total: -40.41 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.42 kcal Total: -81.37 2.93 -78.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068971820.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.588 kcal (2) G-P(sol) polarization free energy of solvation -81.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds