Wall clock time and date at job start Tue Mar 31 2020 03:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 114.00202 * 2 1 4 4 C 1.50693 * 109.47306 * 180.02562 * 3 2 1 5 5 C 1.38267 * 119.99462 * 270.02223 * 4 3 2 6 6 C 1.38213 * 119.99729 * 179.97438 * 5 4 3 7 7 C 1.38257 * 119.99931 * 359.81327 * 6 5 4 8 8 C 1.38210 * 120.00117 * 0.41506 * 7 6 5 9 9 C 1.50705 * 120.00202 * 179.81045 * 8 7 6 10 10 N 1.46495 * 109.47253 * 269.72960 * 9 8 7 11 11 C 1.34781 * 119.99968 * 179.72207 * 10 9 8 12 12 O 1.21277 * 119.99875 * 0.27418 * 11 10 9 13 13 C 1.50694 * 119.99876 * 180.27783 * 11 10 9 14 14 N 1.46497 * 109.47118 * 180.02562 * 13 11 10 15 15 C 1.46508 * 120.00021 * 269.99934 * 14 13 11 16 16 C 1.36944 * 120.00608 * 89.99368 * 14 13 11 17 17 H 1.08000 * 119.99120 * 20.27984 * 16 14 13 18 18 C 1.38810 * 120.00084 * 200.27864 * 16 14 13 19 19 N 1.31617 * 120.00301 * 15.01574 * 18 16 14 20 20 Si 1.86802 * 119.99603 * 195.01845 * 18 16 14 21 21 H 1.48505 * 109.47107 * 85.00227 * 20 18 16 22 22 H 1.48494 * 109.47015 * 205.00144 * 20 18 16 23 23 H 1.48494 * 109.47232 * 325.00557 * 20 18 16 24 24 C 1.38205 * 120.00539 * 89.99697 * 4 3 2 25 25 H 1.09001 * 109.46712 * 299.99721 * 1 2 3 26 26 H 1.09000 * 109.47028 * 59.99513 * 1 2 3 27 27 H 1.08990 * 109.47077 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46960 * 59.99809 * 3 2 1 29 29 H 1.09007 * 109.46817 * 300.00307 * 3 2 1 30 30 H 1.07996 * 119.99997 * 359.97438 * 5 4 3 31 31 H 1.07996 * 119.99915 * 180.02562 * 6 5 4 32 32 H 1.08005 * 120.00131 * 180.23275 * 7 6 5 33 33 H 1.08998 * 109.47075 * 149.72413 * 9 8 7 34 34 H 1.09000 * 109.46893 * 29.72998 * 9 8 7 35 35 H 0.97003 * 120.00354 * 359.97438 * 10 9 8 36 36 H 1.09005 * 109.47121 * 299.99497 * 13 11 10 37 37 H 1.09001 * 109.47648 * 59.99821 * 13 11 10 38 38 H 1.09002 * 109.47168 * 95.09235 * 15 14 13 39 39 H 1.09002 * 109.47340 * 215.10267 * 15 14 13 40 40 H 1.09004 * 109.46643 * 335.09503 * 15 14 13 41 41 H 0.96996 * 120.00134 * 179.97438 * 19 18 16 42 42 H 1.07996 * 120.00154 * 0.02562 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2020 1.1312 1.1966 6 6 5.5798 1.0215 1.1960 7 6 6.2681 0.9632 -0.0016 8 6 5.5793 1.0232 -1.1982 9 6 6.3300 0.9639 -2.5037 10 7 6.6819 2.3216 -2.9267 11 6 7.3662 2.5146 -4.0717 12 8 7.6863 1.5646 -4.7543 13 6 7.7336 3.9107 -4.5037 14 7 8.4675 3.8528 -5.7703 15 6 9.9277 3.7333 -5.7661 16 6 7.7887 3.9101 -6.9583 17 1 6.7889 4.3171 -6.9897 18 6 8.3858 3.4451 -8.1220 19 7 9.4614 2.6896 -8.0533 20 14 7.6628 3.8918 -9.7855 21 1 8.1866 5.2137 -10.2141 22 1 8.0442 2.8609 -10.7839 23 1 6.1830 3.9562 -9.6809 24 6 4.2010 1.1320 -1.1978 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.6640 1.1737 2.1320 31 1 6.1183 0.9780 2.1311 32 1 7.3445 0.8737 -0.0020 33 1 5.7020 0.4979 -3.2630 34 1 7.2390 0.3767 -2.3737 35 1 6.4256 3.0815 -2.3810 36 1 6.8266 4.5005 -4.6365 37 1 8.3600 4.3740 -3.7414 38 1 10.2067 2.6836 -5.8579 39 1 10.3405 4.2939 -6.6049 40 1 10.3222 4.1338 -4.8322 41 1 9.8784 2.3644 -8.8664 42 1 3.6624 1.1752 -2.1329 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068971906.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:30 Heat of formation + Delta-G solvation = -26.489927 kcal Electronic energy + Delta-G solvation = -22478.087232 eV Core-core repulsion = 19038.356671 eV Total energy + Delta-G solvation = -3439.730561 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.89511 -38.63208 -37.81823 -35.22627 -34.29168 -32.18158 -31.43658 -30.98703 -27.76152 -27.44258 -25.83640 -25.59856 -25.28040 -22.29527 -21.57827 -20.75128 -19.60742 -17.07454 -16.71848 -16.64752 -16.36619 -16.19594 -15.62594 -15.38994 -15.23690 -14.56637 -14.33802 -14.20023 -13.41153 -13.20264 -13.06043 -12.90169 -12.82566 -12.60544 -12.55405 -12.12044 -11.77085 -11.65328 -11.17997 -11.12633 -11.04550 -10.80071 -10.60213 -10.31467 -10.04168 -9.96127 -9.82391 -9.24029 -9.03954 -8.78053 -8.46594 -8.40383 -6.72525 -5.63527 -3.07992 1.04397 1.18209 3.25620 3.43977 3.49140 3.51539 3.65316 3.77097 4.09809 4.52185 4.56342 4.57371 4.71899 4.90798 4.92896 4.98544 5.04296 5.09716 5.28991 5.33190 5.35745 5.50449 5.59127 5.63580 5.69685 5.88281 5.92183 6.12404 6.20762 6.25773 6.34276 6.35082 6.49873 6.76162 6.77368 6.81258 7.01675 7.42832 7.80805 7.90369 8.18050 8.44900 9.18498 9.29304 9.91051 10.37723 11.41226 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.021131 B = 0.002924 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.752875 B = 9573.025641 C =10490.476898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.103 3.897 4 C -0.097 4.097 5 C -0.097 4.097 6 C -0.125 4.125 7 C -0.095 4.095 8 C -0.098 4.098 9 C 0.159 3.841 10 N -0.746 5.746 11 C 0.468 3.532 12 O -0.508 6.508 13 C 0.133 3.867 14 N -0.573 5.573 15 C 0.163 3.837 16 C -0.258 4.258 17 H 0.070 0.930 18 C 0.006 3.994 19 N -0.896 5.896 20 Si 0.906 3.094 21 H -0.287 1.287 22 H -0.291 1.291 23 H -0.280 1.280 24 C -0.080 4.080 25 H 0.040 0.960 26 H 0.042 0.958 27 H 0.086 0.914 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.121 0.879 31 H 0.124 0.876 32 H 0.125 0.875 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.391 0.609 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.035 0.965 39 H 0.047 0.953 40 H -0.003 1.003 41 H 0.252 0.748 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.416 -0.940 21.295 25.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C 0.027 3.973 4 C -0.097 4.097 5 C -0.116 4.116 6 C -0.143 4.143 7 C -0.114 4.114 8 C -0.098 4.098 9 C 0.035 3.965 10 N -0.403 5.403 11 C 0.252 3.748 12 O -0.380 6.380 13 C 0.000 4.000 14 N -0.293 5.293 15 C 0.018 3.982 16 C -0.388 4.388 17 H 0.088 0.912 18 C -0.193 4.193 19 N -0.539 5.539 20 Si 0.736 3.264 21 H -0.214 1.214 22 H -0.218 1.218 23 H -0.206 1.206 24 C -0.099 4.099 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.105 0.895 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.139 0.861 31 H 0.142 0.858 32 H 0.143 0.857 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.224 0.776 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.053 0.947 39 H 0.066 0.934 40 H 0.016 0.984 41 H 0.062 0.938 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -12.889 -1.878 20.534 24.317 hybrid contribution -0.814 0.422 -0.537 1.063 sum -13.703 -1.456 19.997 24.285 Atomic orbital electron populations 1.22765 0.80958 1.02905 1.00020 1.87986 1.19623 1.27438 1.95404 1.21349 0.89906 0.85119 1.00959 1.19534 0.93900 1.02691 0.93552 1.21027 0.94348 0.98919 0.97288 1.21122 0.94151 1.00922 0.98090 1.21185 1.00194 0.98199 0.91809 1.20024 0.93684 1.00974 0.95168 1.20065 0.98374 0.86520 0.91553 1.46679 1.60606 1.07112 1.25938 1.23719 0.76608 0.95447 0.79021 1.90706 1.51540 1.43497 1.52249 1.21008 0.97479 0.91154 0.90324 1.43922 1.02281 1.83195 0.99858 1.20861 0.81855 1.00066 0.95400 1.19158 1.00396 1.34789 0.84425 0.91217 1.25032 0.98383 0.97430 0.98460 1.70123 1.22361 1.34722 1.26712 0.86255 0.78603 0.77526 0.83993 1.21405 1.21751 1.20585 1.21016 0.93617 0.97602 0.97665 0.94088 0.93893 0.89522 0.92448 0.92249 0.86118 0.85790 0.85653 0.91337 0.91343 0.77571 0.90931 0.91513 0.94709 0.93449 0.98421 0.93785 0.85705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.32 16 2 O -0.39 -4.00 10.69 -35.23 -0.38 -4.37 16 3 C 0.10 0.91 6.06 36.00 0.22 1.13 16 4 C -0.10 -1.00 5.51 -104.63 -0.58 -1.58 16 5 C -0.10 -0.91 9.70 -39.58 -0.38 -1.30 16 6 C -0.12 -1.16 10.05 -39.58 -0.40 -1.55 16 7 C -0.10 -1.01 9.70 -39.58 -0.38 -1.39 16 8 C -0.10 -1.17 5.25 -104.62 -0.55 -1.72 16 9 C 0.16 2.33 5.80 -5.19 -0.03 2.30 16 10 N -0.75 -11.64 5.55 -61.48 -0.34 -11.98 16 11 C 0.47 9.86 7.90 -10.99 -0.09 9.77 16 12 O -0.51 -13.69 16.43 5.56 0.09 -13.60 16 13 C 0.13 2.74 6.19 -5.20 -0.03 2.71 16 14 N -0.57 -15.06 2.42 -182.49 -0.44 -15.50 16 15 C 0.16 4.22 9.02 59.85 0.54 4.76 16 16 C -0.26 -7.40 9.68 -15.06 -0.15 -7.54 16 17 H 0.07 1.93 7.86 -52.49 -0.41 1.52 16 18 C 0.01 0.19 5.06 -17.43 -0.09 0.10 16 19 N -0.90 -27.61 10.66 55.49 0.59 -27.02 16 20 Si 0.91 22.65 29.58 -169.99 -5.03 17.62 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 24 C -0.08 -0.92 9.36 -39.59 -0.37 -1.29 16 25 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 29 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 30 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 31 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 32 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 33 H 0.07 1.10 8.09 -51.93 -0.42 0.68 16 34 H 0.07 1.06 8.08 -51.93 -0.42 0.64 16 35 H 0.39 4.89 8.46 -40.82 -0.35 4.55 16 36 H 0.07 1.36 8.03 -51.93 -0.42 0.94 16 37 H 0.07 1.16 7.86 -51.93 -0.41 0.75 16 38 H 0.03 1.01 7.40 -51.93 -0.38 0.63 16 39 H 0.05 1.28 7.21 -51.93 -0.37 0.91 16 40 H 0.00 -0.06 7.84 -51.93 -0.41 -0.47 16 41 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 358.89 15.07 5.41 5.41 Total: -1.00 -36.26 358.89 -7.79 -44.05 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -6.52 Total: -0.31 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: -1.17 Total: 5.70 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: -0.19 Total: -54.50 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.29 Total: -17.98 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.03 Total: 17.62 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -36.26 -7.79 -44.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068971906.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.558 kcal (2) G-P(sol) polarization free energy of solvation -36.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds