Wall clock time and date at job start Tue Mar 31 2020 03:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 114.00202 * 2 1 4 4 C 1.50693 * 109.47306 * 180.02562 * 3 2 1 5 5 C 1.38267 * 119.99462 * 270.02223 * 4 3 2 6 6 C 1.38213 * 119.99729 * 179.97438 * 5 4 3 7 7 C 1.38257 * 119.99931 * 359.81327 * 6 5 4 8 8 C 1.38210 * 120.00117 * 0.41506 * 7 6 5 9 9 C 1.50705 * 120.00202 * 179.81045 * 8 7 6 10 10 N 1.46495 * 109.47253 * 269.72960 * 9 8 7 11 11 C 1.34781 * 119.99968 * 179.72207 * 10 9 8 12 12 O 1.21277 * 119.99875 * 0.27418 * 11 10 9 13 13 C 1.50694 * 119.99876 * 180.27783 * 11 10 9 14 14 N 1.46497 * 109.47118 * 180.02562 * 13 11 10 15 15 C 1.46508 * 120.00021 * 269.99934 * 14 13 11 16 16 C 1.36944 * 120.00608 * 89.99368 * 14 13 11 17 17 H 1.08000 * 119.99120 * 20.27984 * 16 14 13 18 18 C 1.38810 * 120.00084 * 200.27864 * 16 14 13 19 19 N 1.31617 * 120.00301 * 15.01574 * 18 16 14 20 20 Si 1.86802 * 119.99603 * 195.01845 * 18 16 14 21 21 H 1.48505 * 109.47107 * 85.00227 * 20 18 16 22 22 H 1.48494 * 109.47015 * 205.00144 * 20 18 16 23 23 H 1.48494 * 109.47232 * 325.00557 * 20 18 16 24 24 C 1.38205 * 120.00539 * 89.99697 * 4 3 2 25 25 H 1.09001 * 109.46712 * 299.99721 * 1 2 3 26 26 H 1.09000 * 109.47028 * 59.99513 * 1 2 3 27 27 H 1.08990 * 109.47077 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46960 * 59.99809 * 3 2 1 29 29 H 1.09007 * 109.46817 * 300.00307 * 3 2 1 30 30 H 1.07996 * 119.99997 * 359.97438 * 5 4 3 31 31 H 1.07996 * 119.99915 * 180.02562 * 6 5 4 32 32 H 1.08005 * 120.00131 * 180.23275 * 7 6 5 33 33 H 1.08998 * 109.47075 * 149.72413 * 9 8 7 34 34 H 1.09000 * 109.46893 * 29.72998 * 9 8 7 35 35 H 0.97003 * 120.00354 * 359.97438 * 10 9 8 36 36 H 1.09005 * 109.47121 * 299.99497 * 13 11 10 37 37 H 1.09001 * 109.47648 * 59.99821 * 13 11 10 38 38 H 1.09002 * 109.47168 * 95.09235 * 15 14 13 39 39 H 1.09002 * 109.47340 * 215.10267 * 15 14 13 40 40 H 1.09004 * 109.46643 * 335.09503 * 15 14 13 41 41 H 0.96996 * 120.00134 * 179.97438 * 19 18 16 42 42 H 1.07996 * 120.00154 * 0.02562 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2020 1.1312 1.1966 6 6 5.5798 1.0215 1.1960 7 6 6.2681 0.9632 -0.0016 8 6 5.5793 1.0232 -1.1982 9 6 6.3300 0.9639 -2.5037 10 7 6.6819 2.3216 -2.9267 11 6 7.3662 2.5146 -4.0717 12 8 7.6863 1.5646 -4.7543 13 6 7.7336 3.9107 -4.5037 14 7 8.4675 3.8528 -5.7703 15 6 9.9277 3.7333 -5.7661 16 6 7.7887 3.9101 -6.9583 17 1 6.7889 4.3171 -6.9897 18 6 8.3858 3.4451 -8.1220 19 7 9.4614 2.6896 -8.0533 20 14 7.6628 3.8918 -9.7855 21 1 8.1866 5.2137 -10.2141 22 1 8.0442 2.8609 -10.7839 23 1 6.1830 3.9562 -9.6809 24 6 4.2010 1.1320 -1.1978 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.6640 1.1737 2.1320 31 1 6.1183 0.9780 2.1311 32 1 7.3445 0.8737 -0.0020 33 1 5.7020 0.4979 -3.2630 34 1 7.2390 0.3767 -2.3737 35 1 6.4256 3.0815 -2.3810 36 1 6.8266 4.5005 -4.6365 37 1 8.3600 4.3740 -3.7414 38 1 10.2067 2.6836 -5.8579 39 1 10.3405 4.2939 -6.6049 40 1 10.3222 4.1338 -4.8322 41 1 9.8784 2.3644 -8.8664 42 1 3.6624 1.1752 -2.1329 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068971906.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:29 Heat of formation + Delta-G solvation = -51.678012 kcal Electronic energy + Delta-G solvation = -22479.179469 eV Core-core repulsion = 19038.356671 eV Total energy + Delta-G solvation = -3440.822798 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.86875 -40.11154 -38.56433 -37.10118 -35.76731 -33.37120 -32.97386 -32.23710 -29.26144 -28.20344 -27.89489 -26.68313 -26.23805 -23.59099 -22.98912 -21.71193 -21.23845 -18.81759 -18.15897 -17.46352 -17.32323 -17.10880 -17.04229 -16.48900 -16.29860 -16.22869 -15.71836 -15.26380 -15.05374 -14.83423 -14.66499 -13.91828 -13.81076 -13.64073 -13.60886 -13.40795 -13.12553 -13.01463 -12.78542 -12.51162 -12.36456 -12.22319 -12.03170 -11.98879 -11.89003 -11.85990 -10.93715 -10.66170 -10.54978 -9.96359 -9.82587 -9.76501 -8.81717 -7.80607 -5.28137 0.23279 0.37286 1.45337 1.48101 1.56134 1.97254 2.33822 2.52613 2.74138 3.21464 3.36289 3.62888 3.71994 3.82336 3.96703 4.15746 4.25210 4.32336 4.32999 4.43555 4.47689 4.55401 4.59130 4.62935 4.71457 4.75553 4.76693 4.82928 4.86579 5.01706 5.09301 5.30410 5.48057 5.57796 5.60376 5.61474 5.61740 5.75081 6.00559 6.19974 6.28857 6.79142 7.13748 7.58612 7.86625 8.26577 9.23311 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.021131 B = 0.002924 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.752875 B = 9573.025641 C =10490.476898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.414 6.414 3 C 0.101 3.899 4 C -0.105 4.105 5 C -0.094 4.094 6 C -0.121 4.121 7 C -0.100 4.100 8 C -0.108 4.108 9 C 0.165 3.835 10 N -0.720 5.720 11 C 0.471 3.529 12 O -0.576 6.576 13 C 0.128 3.872 14 N -0.594 5.594 15 C 0.177 3.823 16 C -0.264 4.264 17 H 0.078 0.922 18 C -0.058 4.058 19 N -0.935 5.935 20 Si 0.973 3.027 21 H -0.277 1.277 22 H -0.300 1.300 23 H -0.269 1.269 24 C -0.092 4.092 25 H 0.057 0.943 26 H 0.047 0.953 27 H 0.093 0.907 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.146 0.854 31 H 0.152 0.848 32 H 0.133 0.867 33 H 0.049 0.951 34 H 0.058 0.942 35 H 0.411 0.589 36 H 0.097 0.903 37 H 0.107 0.893 38 H -0.008 1.008 39 H 0.024 0.976 40 H 0.039 0.961 41 H 0.245 0.755 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.263 0.440 23.978 28.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.334 6.334 3 C 0.025 3.975 4 C -0.105 4.105 5 C -0.112 4.112 6 C -0.139 4.139 7 C -0.119 4.119 8 C -0.109 4.109 9 C 0.041 3.959 10 N -0.376 5.376 11 C 0.257 3.743 12 O -0.453 6.453 13 C -0.003 4.003 14 N -0.314 5.314 15 C 0.032 3.968 16 C -0.394 4.394 17 H 0.095 0.905 18 C -0.253 4.253 19 N -0.581 5.581 20 Si 0.801 3.199 21 H -0.203 1.203 22 H -0.227 1.227 23 H -0.194 1.194 24 C -0.111 4.111 25 H 0.076 0.924 26 H 0.066 0.934 27 H 0.111 0.889 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.163 0.837 31 H 0.170 0.830 32 H 0.150 0.850 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.248 0.752 36 H 0.115 0.885 37 H 0.125 0.875 38 H 0.010 0.990 39 H 0.043 0.957 40 H 0.058 0.942 41 H 0.054 0.946 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -14.803 -0.450 23.312 27.619 hybrid contribution -0.354 -0.015 -1.138 1.192 sum -15.158 -0.465 22.174 26.864 Atomic orbital electron populations 1.22935 0.79370 1.03755 1.01077 1.87934 1.21480 1.28346 1.95637 1.21433 0.88937 0.84907 1.02195 1.19777 0.94953 1.02306 0.93429 1.21383 0.94602 0.97370 0.97888 1.21438 0.94315 0.99542 0.98560 1.21324 1.00709 0.98039 0.91793 1.19727 0.93740 1.03307 0.94088 1.19975 0.97947 0.85253 0.92752 1.46245 1.58382 1.08611 1.24351 1.23499 0.76398 0.94788 0.79633 1.90699 1.54609 1.45309 1.54729 1.21275 0.98823 0.91024 0.89158 1.44100 1.02559 1.83525 1.01223 1.20573 0.82446 0.97271 0.96476 1.19571 1.00524 1.33594 0.85723 0.90474 1.25901 0.99216 0.97971 1.02238 1.70334 1.24192 1.36648 1.26967 0.85198 0.78307 0.77109 0.79274 1.20299 1.22701 1.19381 1.21041 0.93472 0.98367 0.98210 0.92445 0.93386 0.88893 0.90282 0.91944 0.83660 0.83040 0.84956 0.93257 0.92346 0.75226 0.88538 0.87477 0.98976 0.95742 0.94242 0.94586 0.86365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 11.01 113.37 1.25 1.54 16 2 O -0.41 -7.90 10.69 -148.98 -1.59 -9.49 16 3 C 0.10 1.57 6.06 71.23 0.43 2.00 16 4 C -0.10 -1.95 5.51 -19.87 -0.11 -2.06 16 5 C -0.09 -1.46 9.70 22.27 0.22 -1.25 16 6 C -0.12 -1.84 10.05 22.27 0.22 -1.62 16 7 C -0.10 -1.91 9.70 22.27 0.22 -1.69 16 8 C -0.11 -2.47 5.25 -19.86 -0.10 -2.58 16 9 C 0.16 4.86 5.80 85.64 0.50 5.35 16 10 N -0.72 -21.70 5.55 -466.80 -2.59 -24.29 16 11 C 0.47 19.68 7.90 87.65 0.69 20.37 16 12 O -0.58 -31.97 16.43 -3.02 -0.05 -32.02 16 13 C 0.13 5.02 6.19 85.63 0.53 5.55 16 14 N -0.59 -31.11 2.42 -731.28 -1.77 -32.88 16 15 C 0.18 9.32 9.02 127.77 1.15 10.48 16 16 C -0.26 -15.18 9.68 84.03 0.81 -14.37 16 17 H 0.08 4.21 7.86 -2.91 -0.02 4.19 16 18 C -0.06 -3.47 5.06 84.86 0.43 -3.04 16 19 N -0.94 -59.87 10.66 21.65 0.23 -59.64 16 20 Si 0.97 47.39 29.58 68.60 2.03 49.42 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 22 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 23 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 24 C -0.09 -2.03 9.36 22.27 0.21 -1.82 16 25 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 26 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.08 0.86 8.09 -2.39 -0.02 0.84 16 29 H 0.06 0.90 8.09 -2.38 -0.02 0.88 16 30 H 0.15 1.53 8.06 -2.91 -0.02 1.50 16 31 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 32 H 0.13 2.29 8.06 -2.91 -0.02 2.27 16 33 H 0.05 1.65 8.09 -2.39 -0.02 1.63 16 34 H 0.06 1.85 8.08 -2.39 -0.02 1.83 16 35 H 0.41 9.31 8.46 -92.71 -0.78 8.53 16 36 H 0.10 3.34 8.03 -2.38 -0.02 3.32 16 37 H 0.11 3.33 7.86 -2.39 -0.02 3.32 16 38 H -0.01 -0.50 7.40 -2.39 -0.02 -0.52 16 39 H 0.02 1.35 7.21 -2.39 -0.02 1.33 16 40 H 0.04 1.69 7.84 -2.38 -0.02 1.67 16 41 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 42 H 0.12 2.66 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -81.84 358.89 2.93 -78.91 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: 0.22 Total: 13.12 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: 6.44 Total: 16.87 kcal Atomic # 7 Polarization: -112.69 SS G_CDS: -4.13 Total: -116.81 kcal Atomic # 8 Polarization: -39.86 SS G_CDS: -1.64 Total: -41.51 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.42 kcal Total: -81.84 2.93 -78.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068971906.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.234 kcal (2) G-P(sol) polarization free energy of solvation -81.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds