Wall clock time and date at job start Tue Mar 31 2020 03:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46899 * 111.00274 * 2 1 4 4 C 1.53001 * 109.47014 * 199.84373 * 3 2 1 5 5 O 1.42907 * 109.46798 * 65.19982 * 4 3 2 6 6 C 1.46908 * 110.99352 * 123.94839 * 2 1 3 7 7 C 1.50702 * 109.46712 * 66.04917 * 6 2 1 8 8 O 1.21289 * 120.00556 * 5.82039 * 7 6 2 9 9 N 1.34782 * 119.99483 * 185.82157 * 7 6 2 10 10 C 1.46502 * 119.99877 * 184.89934 * 9 7 6 11 11 C 1.50708 * 109.46841 * 269.99928 * 10 9 7 12 12 H 1.08002 * 119.99848 * 0.02562 * 11 10 9 13 13 C 1.37872 * 120.00076 * 179.97438 * 11 10 9 14 14 N 1.31522 * 120.00057 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00204 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46668 * 60.00050 * 15 13 11 17 17 H 1.48501 * 109.46907 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.46939 * 300.00284 * 15 13 11 19 19 C 1.39917 * 120.00265 * 4.89789 * 9 7 6 20 20 C 1.38869 * 120.07263 * 69.16986 * 19 9 7 21 21 C 1.38116 * 119.92964 * 179.97438 * 20 19 9 22 22 C 1.38279 * 120.07177 * 359.97438 * 21 20 19 23 23 C 1.38287 * 120.14059 * 0.04364 * 22 21 20 24 24 C 1.38108 * 120.06938 * 359.95234 * 23 22 21 25 25 H 1.08994 * 109.47216 * 290.27459 * 1 2 3 26 26 H 1.09005 * 109.46429 * 50.27911 * 1 2 3 27 27 H 1.08999 * 109.47028 * 170.26907 * 1 2 3 28 28 H 1.09001 * 109.47001 * 319.84568 * 3 2 1 29 29 H 1.09003 * 109.46852 * 79.84377 * 3 2 1 30 30 H 1.08994 * 109.46656 * 185.19467 * 4 3 2 31 31 H 1.08998 * 109.47084 * 305.19810 * 4 3 2 32 32 H 0.96698 * 113.99445 * 180.02562 * 5 4 3 33 33 H 1.08996 * 109.47536 * 306.05147 * 6 2 1 34 34 H 1.09006 * 109.46746 * 186.04428 * 6 2 1 35 35 H 1.09001 * 109.47445 * 29.99385 * 10 9 7 36 36 H 1.08992 * 109.47788 * 149.99993 * 10 9 7 37 37 H 0.97001 * 119.99956 * 179.97438 * 14 13 11 38 38 H 1.07994 * 120.03470 * 359.70460 * 20 19 9 39 39 H 1.08007 * 119.96409 * 179.97438 * 21 20 19 40 40 H 1.08002 * 119.92796 * 179.97438 * 22 21 20 41 41 H 1.07994 * 119.96416 * 179.97438 * 23 22 21 42 42 H 1.08004 * 120.03389 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.4450 1.3612 -0.4897 5 8 3.4831 0.9458 -1.8565 6 6 1.9953 -0.7659 1.1378 7 6 1.6368 -2.2204 0.9730 8 8 1.0984 -2.6008 -0.0451 9 7 1.9144 -3.0985 1.9571 10 6 1.6647 -4.5279 1.7553 11 6 0.2630 -4.8604 2.1980 12 1 -0.3778 -4.0844 2.5900 13 6 -0.2016 -6.1549 2.1016 14 7 0.5783 -7.0995 1.6228 15 14 -1.9388 -6.5672 2.6509 16 1 -2.9107 -5.7768 1.8535 17 1 -2.1918 -8.0161 2.4463 18 1 -2.0943 -6.2364 4.0902 19 6 2.4410 -2.6449 3.1715 20 6 1.6538 -1.8932 4.0339 21 6 2.1764 -1.4475 5.2321 22 6 3.4819 -1.7493 5.5736 23 6 4.2686 -2.4973 4.7169 24 6 3.7518 -2.9461 3.5173 25 1 -0.3633 0.3561 0.9639 26 1 -0.3632 0.6568 -0.7905 27 1 -0.3633 -1.0129 -0.1737 28 1 1.3925 1.9921 -0.6627 29 1 1.9566 1.7755 1.0116 30 1 3.8649 2.3632 -0.4026 31 1 4.0286 0.6686 0.1169 32 1 4.3730 0.9157 -2.2337 33 1 1.5609 -0.3872 2.0629 34 1 3.0797 -0.6611 1.1758 35 1 1.7794 -4.7712 0.6990 36 1 2.3778 -5.1076 2.3412 37 1 0.2515 -8.0103 1.5553 38 1 0.6353 -1.6538 3.7660 39 1 1.5648 -0.8625 5.9031 40 1 3.8884 -1.3992 6.5110 41 1 5.2879 -2.7310 4.9862 42 1 4.3669 -3.5299 2.8484 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070923962.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:18 Heat of formation + Delta-G solvation = -63.122513 kcal Electronic energy + Delta-G solvation = -24003.028829 eV Core-core repulsion = 20561.709759 eV Total energy + Delta-G solvation = -3441.319069 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.47859 -39.67168 -38.56509 -36.88218 -36.29948 -34.79443 -31.87858 -31.10145 -30.56734 -29.97169 -28.39666 -25.63386 -24.62550 -23.72724 -23.32446 -22.00299 -20.42710 -18.77814 -18.61601 -18.23941 -17.53573 -17.08325 -16.99963 -16.47152 -16.14395 -15.75952 -15.66429 -15.31186 -14.95616 -14.59739 -14.33510 -14.27834 -14.13851 -13.81949 -13.58798 -13.40108 -13.22690 -13.09563 -12.81644 -12.71685 -12.64323 -12.44343 -12.14908 -12.10437 -11.80249 -11.73185 -10.82361 -10.80301 -10.67687 -10.05362 -9.83536 -9.38189 -9.11432 -8.25566 -6.40434 0.37180 0.50545 1.32648 1.37465 1.44632 1.71457 2.09007 2.36676 2.86190 2.96561 3.03964 3.49919 3.61074 4.04741 4.09858 4.13442 4.17749 4.21443 4.28834 4.32534 4.49579 4.55882 4.60842 4.66716 4.68168 4.71949 4.76575 4.90287 4.99242 5.05682 5.10345 5.16041 5.42932 5.54780 5.63038 5.67096 5.78305 5.89258 6.00062 6.08331 6.11608 6.65125 6.76119 7.03419 7.23928 7.41436 8.81561 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.012129 B = 0.005732 C = 0.004505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.967376 B = 4884.044789 C = 6214.498314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.540 5.540 3 C 0.050 3.950 4 C 0.079 3.921 5 O -0.587 6.587 6 C 0.057 3.943 7 C 0.503 3.497 8 O -0.561 6.561 9 N -0.568 5.568 10 C 0.269 3.731 11 C -0.540 4.540 12 H 0.049 0.951 13 C 0.009 3.991 14 N -0.927 5.927 15 Si 0.967 3.033 16 H -0.277 1.277 17 H -0.275 1.275 18 H -0.261 1.261 19 C 0.125 3.875 20 C -0.137 4.137 21 C -0.103 4.103 22 C -0.118 4.118 23 C -0.102 4.102 24 C -0.140 4.140 25 H 0.035 0.965 26 H 0.082 0.918 27 H 0.044 0.956 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.041 0.959 32 H 0.389 0.611 33 H 0.076 0.924 34 H 0.112 0.888 35 H 0.000 1.000 36 H 0.020 0.980 37 H 0.268 0.732 38 H 0.108 0.892 39 H 0.153 0.847 40 H 0.161 0.839 41 H 0.154 0.846 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.761 19.551 7.539 22.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.265 5.265 3 C -0.077 4.077 4 C 0.001 3.999 5 O -0.394 6.394 6 C -0.073 4.073 7 C 0.293 3.707 8 O -0.439 6.439 9 N -0.297 5.297 10 C 0.149 3.851 11 C -0.578 4.578 12 H 0.068 0.932 13 C -0.190 4.190 14 N -0.567 5.567 15 Si 0.791 3.209 16 H -0.202 1.202 17 H -0.200 1.200 18 H -0.186 1.186 19 C 0.035 3.965 20 C -0.157 4.157 21 C -0.121 4.121 22 C -0.136 4.136 23 C -0.120 4.120 24 C -0.160 4.160 25 H 0.053 0.947 26 H 0.100 0.900 27 H 0.063 0.937 28 H 0.105 0.895 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.060 0.940 32 H 0.238 0.762 33 H 0.094 0.906 34 H 0.130 0.870 35 H 0.019 0.981 36 H 0.038 0.962 37 H 0.077 0.923 38 H 0.127 0.873 39 H 0.170 0.830 40 H 0.178 0.822 41 H 0.171 0.829 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 7.987 18.881 6.569 21.527 hybrid contribution -0.697 -0.739 0.301 1.059 sum 7.290 18.142 6.870 20.724 Atomic orbital electron populations 1.22397 0.86806 1.02144 1.00672 1.61499 1.08566 1.14470 1.41989 1.22369 0.96310 0.87798 1.01195 1.22313 0.95839 0.99060 0.82689 1.86587 1.34775 1.91437 1.26645 1.21946 1.02442 0.89206 0.93735 1.21229 0.78043 0.89050 0.82415 1.90639 1.42503 1.80325 1.30384 1.45826 1.62238 1.08518 1.13074 1.18776 0.95704 0.75398 0.95233 1.21548 0.99250 0.94306 1.42702 0.93229 1.25841 1.02262 0.95869 0.94988 1.70043 1.38350 1.02059 1.46252 0.85474 0.78876 0.77353 0.79172 1.20240 1.19973 1.18587 1.18020 0.92945 0.98436 0.87102 1.21374 0.98815 1.00335 0.95155 1.21337 0.96470 0.99376 0.94919 1.21558 0.93657 0.97919 1.00477 1.21343 1.01302 0.96986 0.92363 1.21421 0.93798 1.01566 0.99232 0.94663 0.89979 0.93681 0.89471 0.90770 0.90200 0.94046 0.76238 0.90590 0.86985 0.98148 0.96186 0.92297 0.87343 0.82957 0.82177 0.82876 0.86867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.90 9.19 127.69 1.17 2.07 16 2 N -0.54 -17.32 4.34 -927.01 -4.03 -21.35 16 3 C 0.05 1.11 5.39 86.30 0.46 1.57 16 4 C 0.08 1.54 7.24 71.98 0.52 2.06 16 5 O -0.59 -14.46 13.61 -148.98 -2.03 -16.49 16 6 C 0.06 1.88 4.20 85.56 0.36 2.24 16 7 C 0.50 22.97 7.20 87.66 0.63 23.60 16 8 O -0.56 -31.22 14.22 -3.06 -0.04 -31.26 16 9 N -0.57 -26.33 2.50 -635.29 -1.59 -27.92 16 10 C 0.27 15.37 5.08 85.64 0.43 15.80 16 11 C -0.54 -32.52 9.39 25.60 0.24 -32.28 16 12 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 13 C 0.01 0.56 5.46 84.65 0.46 1.03 16 14 N -0.93 -57.68 13.29 21.45 0.28 -57.39 16 15 Si 0.97 46.33 29.54 68.60 2.03 48.35 16 16 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 17 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 18 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 19 C 0.13 4.63 4.39 38.15 0.17 4.79 16 20 C -0.14 -4.29 8.32 22.39 0.19 -4.10 16 21 C -0.10 -2.29 10.04 22.25 0.22 -2.07 16 22 C -0.12 -2.26 10.04 22.29 0.22 -2.03 16 23 C -0.10 -2.27 10.04 22.25 0.22 -2.05 16 24 C -0.14 -4.40 9.74 22.39 0.22 -4.19 16 25 H 0.03 0.98 8.06 -2.39 -0.02 0.96 16 26 H 0.08 2.28 7.83 -2.38 -0.02 2.26 16 27 H 0.04 1.87 6.21 -2.39 -0.01 1.85 16 28 H 0.09 1.84 7.74 -2.39 -0.02 1.82 16 29 H 0.07 1.25 8.00 -2.39 -0.02 1.23 16 30 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.04 0.82 6.66 -2.39 -0.02 0.80 16 32 H 0.39 5.87 9.12 -74.06 -0.68 5.19 16 33 H 0.08 2.20 6.49 -2.39 -0.02 2.19 16 34 H 0.11 3.25 6.57 -2.38 -0.02 3.24 16 35 H 0.00 0.03 7.49 -2.39 -0.02 0.01 16 36 H 0.02 1.18 7.90 -2.39 -0.02 1.16 16 37 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 38 H 0.11 3.57 8.03 -2.91 -0.02 3.55 16 39 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 40 H 0.16 1.82 8.06 -2.91 -0.02 1.79 16 41 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 42 H 0.11 3.68 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -82.30 351.14 0.50 -81.80 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: 0.34 Total: 17.80 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: 5.53 Total: 6.45 kcal Atomic # 7 Polarization: -101.33 SS G_CDS: -5.33 Total: -106.66 kcal Atomic # 8 Polarization: -45.68 SS G_CDS: -2.07 Total: -47.75 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.35 kcal Total: -82.30 0.50 -81.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070923962.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.681 kcal (2) G-P(sol) polarization free energy of solvation -82.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds