Wall clock time and date at job start Tue Mar 31 2020 03:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46896 * 111.00375 * 2 1 4 4 C 1.50692 * 109.47274 * 72.26258 * 3 2 1 5 5 O 1.21297 * 119.99891 * 0.02562 * 4 3 2 6 6 N 1.34773 * 120.00256 * 180.02562 * 4 3 2 7 7 C 1.37102 * 120.00208 * 180.02562 * 6 4 3 8 8 H 1.08004 * 120.00106 * 359.97438 * 7 6 4 9 9 C 1.38951 * 119.99750 * 180.02562 * 7 6 4 10 10 N 1.31399 * 120.00441 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 119.99480 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47145 * 89.99745 * 11 9 7 13 13 H 1.48506 * 109.46776 * 209.99432 * 11 9 7 14 14 H 1.48498 * 109.47172 * 329.99709 * 11 9 7 15 15 C 1.46906 * 110.99662 * 236.04234 * 2 1 3 16 16 H 1.09004 * 109.46991 * 65.85277 * 15 2 1 17 17 C 1.52994 * 109.46990 * 185.84844 * 15 2 1 18 18 C 1.53005 * 109.47314 * 182.28317 * 17 15 2 19 19 O 1.42894 * 109.47372 * 174.83586 * 18 17 15 20 20 C 1.50699 * 109.47220 * 305.85157 * 15 2 1 21 21 C 1.38234 * 120.00014 * 319.72478 * 20 15 2 22 22 C 1.38239 * 119.99943 * 179.79299 * 21 20 15 23 23 C 1.38232 * 119.99831 * 0.43757 * 22 21 20 24 24 C 1.38240 * 120.00142 * 359.81723 * 23 22 21 25 25 C 1.38231 * 119.99865 * 359.97438 * 24 23 22 26 26 H 1.08999 * 109.47175 * 183.95398 * 1 2 3 27 27 H 1.09004 * 109.46566 * 303.95221 * 1 2 3 28 28 H 1.08997 * 109.47200 * 63.95142 * 1 2 3 29 29 H 1.08997 * 109.46766 * 192.26848 * 3 2 1 30 30 H 1.09003 * 109.46539 * 312.26463 * 3 2 1 31 31 H 0.96997 * 119.99997 * 0.02562 * 6 4 3 32 32 H 0.97006 * 120.00647 * 180.02562 * 10 9 7 33 33 H 1.08998 * 109.47082 * 62.28269 * 17 15 2 34 34 H 1.09006 * 109.47520 * 302.28077 * 17 15 2 35 35 H 1.09001 * 109.46862 * 54.83056 * 18 17 15 36 36 H 1.09004 * 109.46720 * 294.83386 * 18 17 15 37 37 H 0.96697 * 114.00123 * 179.97438 * 19 18 17 38 38 H 1.08003 * 120.00165 * 359.97438 * 21 20 15 39 39 H 1.07994 * 120.00027 * 180.27662 * 22 21 20 40 40 H 1.08003 * 120.00480 * 179.83867 * 23 22 21 41 41 H 1.07999 * 119.99847 * 180.02562 * 24 23 22 42 42 H 1.08002 * 120.00063 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.7716 1.9955 1.3532 5 8 1.2272 1.3601 2.2315 6 7 2.1760 3.2595 1.5876 7 6 1.9726 3.8272 2.8189 8 1 1.4880 3.2615 3.6010 9 6 2.3891 5.1306 3.0603 10 7 2.9783 5.8190 2.1088 11 14 2.1114 5.9042 4.7379 12 1 3.2832 5.6322 5.6085 13 1 1.9389 7.3712 4.5840 14 1 0.8913 5.3243 5.3545 15 6 1.9954 -0.7661 -1.1376 16 1 1.7331 -0.2619 -2.0677 17 6 3.5178 -0.8668 -1.0239 18 6 4.0716 -1.6155 -2.2380 19 8 5.4998 -1.6050 -2.1933 20 6 1.3986 -2.1498 -1.1307 21 6 1.2354 -2.8262 0.0638 22 6 0.6839 -4.0938 0.0706 23 6 0.3040 -4.6886 -1.1180 24 6 0.4720 -4.0143 -2.3130 25 6 1.0195 -2.7450 -2.3194 26 1 -0.3633 -1.0252 0.0709 27 1 -0.3632 0.5740 0.8525 28 1 -0.3633 0.4513 -0.9232 29 1 3.0632 1.3506 -0.2184 30 1 1.4805 1.9582 -0.7606 31 1 2.6109 3.7677 0.8852 32 1 3.2695 6.7289 2.2774 33 1 3.7793 -1.4066 -0.1138 34 1 3.9466 0.1348 -0.9882 35 1 3.7330 -1.1269 -3.1516 36 1 3.7151 -2.6455 -2.2232 37 1 5.9198 -2.0632 -2.9340 38 1 1.5361 -2.3632 0.9921 39 1 0.5523 -4.6204 1.0042 40 1 -0.1245 -5.6800 -1.1131 41 1 0.1748 -4.4788 -3.2416 42 1 1.1504 -2.2180 -3.2530 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075899736.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:48 Heat of formation + Delta-G solvation = -51.523192 kcal Electronic energy + Delta-G solvation = -23442.424129 eV Core-core repulsion = 20001.608044 eV Total energy + Delta-G solvation = -3440.816085 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.99567 -38.33703 -37.22499 -36.30701 -33.87528 -32.48562 -31.20265 -30.88250 -30.30985 -27.74335 -26.20160 -24.65044 -22.85474 -22.51655 -22.16715 -19.97703 -19.05054 -17.81622 -17.48899 -16.97486 -16.11974 -15.77868 -15.40859 -14.91933 -14.59699 -14.51871 -14.44948 -13.86439 -13.70743 -13.54926 -13.34124 -13.05899 -12.93881 -12.63483 -12.20364 -11.92763 -11.54212 -11.46903 -11.33436 -11.22550 -11.14299 -11.00550 -10.86611 -10.55284 -10.36505 -10.17712 -10.01160 -9.44157 -8.91230 -8.69714 -8.44128 -7.92912 -7.84169 -6.37430 -3.78005 1.30883 1.40747 3.20812 3.29008 3.34729 3.72294 3.80670 3.96319 4.19719 4.37131 4.67332 4.85520 4.95989 5.02170 5.11134 5.14972 5.19756 5.25983 5.30169 5.35954 5.48519 5.51579 5.62154 5.73040 5.75420 5.86805 5.97368 5.98433 6.08265 6.13541 6.25118 6.35345 6.41687 6.47928 6.53866 6.65657 6.99585 7.28312 7.37902 7.52112 7.59155 8.10992 8.66914 9.22859 9.59706 10.11931 10.80493 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.021336 B = 0.003579 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.012180 B = 7821.166162 C = 8643.401757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.508 5.508 3 C 0.039 3.961 4 C 0.447 3.553 5 O -0.576 6.576 6 N -0.566 5.566 7 C -0.297 4.297 8 H 0.103 0.897 9 C 0.022 3.978 10 N -0.903 5.903 11 Si 0.929 3.071 12 H -0.278 1.278 13 H -0.284 1.284 14 H -0.270 1.270 15 C 0.126 3.874 16 H 0.047 0.953 17 C -0.113 4.113 18 C 0.079 3.921 19 O -0.573 6.573 20 C -0.074 4.074 21 C -0.087 4.087 22 C -0.124 4.124 23 C -0.125 4.125 24 C -0.126 4.126 25 C -0.120 4.120 26 H 0.065 0.935 27 H 0.087 0.913 28 H 0.014 0.986 29 H 0.092 0.908 30 H 0.049 0.951 31 H 0.391 0.609 32 H 0.271 0.729 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.042 0.958 36 H 0.048 0.952 37 H 0.377 0.623 38 H 0.137 0.863 39 H 0.120 0.880 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.253 -16.615 -12.802 21.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.232 5.232 3 C -0.092 4.092 4 C 0.232 3.768 5 O -0.460 6.460 6 N -0.203 5.203 7 C -0.427 4.427 8 H 0.120 0.880 9 C -0.180 4.180 10 N -0.545 5.545 11 Si 0.756 3.244 12 H -0.204 1.204 13 H -0.210 1.210 14 H -0.195 1.195 15 C 0.018 3.982 16 H 0.065 0.935 17 C -0.151 4.151 18 C 0.001 3.999 19 O -0.378 6.378 20 C -0.074 4.074 21 C -0.105 4.105 22 C -0.142 4.142 23 C -0.143 4.143 24 C -0.144 4.144 25 C -0.138 4.138 26 H 0.084 0.916 27 H 0.106 0.894 28 H 0.033 0.967 29 H 0.110 0.890 30 H 0.067 0.933 31 H 0.224 0.776 32 H 0.081 0.919 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.223 0.777 38 H 0.155 0.845 39 H 0.138 0.862 40 H 0.135 0.865 41 H 0.136 0.864 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.524 -16.718 -11.207 20.184 hybrid contribution -0.053 0.885 -0.982 1.323 sum -1.577 -15.833 -12.189 20.043 Atomic orbital electron populations 1.22474 0.86476 1.02267 1.00836 1.61523 1.08517 1.12798 1.40316 1.21990 1.01184 0.88742 0.97273 1.19703 0.84926 0.82932 0.89231 1.90504 1.46812 1.62278 1.46369 1.41860 1.53035 1.11447 1.14006 1.19689 1.36420 0.96391 0.90175 0.87957 1.25241 0.96945 0.96473 0.99311 1.69608 1.40387 1.11495 1.32964 0.85874 0.78922 0.77895 0.81687 1.20424 1.20999 1.19458 1.20467 0.93773 0.91011 0.92968 0.93539 1.21582 0.92925 1.02050 0.98540 1.22164 0.80613 0.99327 0.97801 1.86503 1.19481 1.80282 1.51487 1.19754 0.98781 0.95418 0.93439 1.21236 0.96859 0.93695 0.98723 1.21219 0.99344 0.95631 0.98036 1.21125 1.00563 0.99804 0.92807 1.21021 1.00394 0.95103 0.97917 1.20984 0.99809 0.95676 0.97341 0.91591 0.89404 0.96734 0.88955 0.93311 0.77554 0.91938 0.89953 0.90219 0.94013 0.93409 0.77716 0.84532 0.86159 0.86515 0.86447 0.86542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 8.75 60.07 0.53 0.97 16 2 N -0.51 -8.44 3.62 -237.73 -0.86 -9.30 16 3 C 0.04 0.71 5.33 -4.98 -0.03 0.68 16 4 C 0.45 10.62 7.49 -10.99 -0.08 10.54 16 5 O -0.58 -15.56 14.44 5.54 0.08 -15.48 16 6 N -0.57 -14.50 5.29 -10.96 -0.06 -14.56 16 7 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 8 H 0.10 3.01 7.16 -52.48 -0.38 2.64 16 9 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 10 N -0.90 -24.83 13.05 55.50 0.72 -24.11 16 11 Si 0.93 21.28 29.55 -169.99 -5.02 16.26 16 12 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 13 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 14 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 15 C 0.13 1.68 1.78 -68.86 -0.12 1.56 16 16 H 0.05 0.58 8.00 -51.93 -0.42 0.16 16 17 C -0.11 -1.50 5.00 -26.73 -0.13 -1.64 16 18 C 0.08 0.86 6.55 37.16 0.24 1.10 16 19 O -0.57 -6.55 13.66 -35.23 -0.48 -7.03 16 20 C -0.07 -0.91 2.96 -104.62 -0.31 -1.22 16 21 C -0.09 -1.13 7.92 -39.58 -0.31 -1.45 16 22 C -0.12 -1.39 10.05 -39.58 -0.40 -1.79 16 23 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 24 C -0.13 -1.22 10.05 -39.58 -0.40 -1.62 16 25 C -0.12 -1.26 8.88 -39.58 -0.35 -1.61 16 26 H 0.07 1.01 5.96 -51.93 -0.31 0.70 16 27 H 0.09 1.71 6.40 -51.93 -0.33 1.38 16 28 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.09 1.55 5.67 -51.93 -0.29 1.25 16 30 H 0.05 0.81 8.05 -51.93 -0.42 0.40 16 31 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16 32 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.08 1.13 6.04 -51.93 -0.31 0.81 16 35 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.05 0.49 7.02 -51.93 -0.36 0.13 16 37 H 0.38 2.41 9.12 45.56 0.42 2.82 16 38 H 0.14 2.03 7.73 -52.48 -0.41 1.62 16 39 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 40 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 41 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 42 H 0.12 1.03 8.04 -52.49 -0.42 0.61 16 LS Contribution 344.91 15.07 5.20 5.20 Total: -1.00 -32.39 344.91 -7.66 -40.05 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -5.23 Total: 13.09 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -2.00 Total: -4.11 kcal Atomic # 7 Polarization: -47.77 SS G_CDS: -0.19 Total: -47.97 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.40 Total: -22.52 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.39 -7.66 -40.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075899736.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.474 kcal (2) G-P(sol) polarization free energy of solvation -32.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds