Wall clock time and date at job start Tue Mar 31 2020 03:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46896 * 111.00375 * 2 1 4 4 C 1.50692 * 109.47274 * 72.26258 * 3 2 1 5 5 O 1.21297 * 119.99891 * 0.02562 * 4 3 2 6 6 N 1.34773 * 120.00256 * 180.02562 * 4 3 2 7 7 C 1.37102 * 120.00208 * 180.02562 * 6 4 3 8 8 H 1.08004 * 120.00106 * 359.97438 * 7 6 4 9 9 C 1.38951 * 119.99750 * 180.02562 * 7 6 4 10 10 N 1.31399 * 120.00441 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 119.99480 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47145 * 89.99745 * 11 9 7 13 13 H 1.48506 * 109.46776 * 209.99432 * 11 9 7 14 14 H 1.48498 * 109.47172 * 329.99709 * 11 9 7 15 15 C 1.46906 * 110.99662 * 236.04234 * 2 1 3 16 16 H 1.09004 * 109.46991 * 65.85277 * 15 2 1 17 17 C 1.52994 * 109.46990 * 185.84844 * 15 2 1 18 18 C 1.53005 * 109.47314 * 182.28317 * 17 15 2 19 19 O 1.42894 * 109.47372 * 174.83586 * 18 17 15 20 20 C 1.50699 * 109.47220 * 305.85157 * 15 2 1 21 21 C 1.38234 * 120.00014 * 319.72478 * 20 15 2 22 22 C 1.38239 * 119.99943 * 179.79299 * 21 20 15 23 23 C 1.38232 * 119.99831 * 0.43757 * 22 21 20 24 24 C 1.38240 * 120.00142 * 359.81723 * 23 22 21 25 25 C 1.38231 * 119.99865 * 359.97438 * 24 23 22 26 26 H 1.08999 * 109.47175 * 183.95398 * 1 2 3 27 27 H 1.09004 * 109.46566 * 303.95221 * 1 2 3 28 28 H 1.08997 * 109.47200 * 63.95142 * 1 2 3 29 29 H 1.08997 * 109.46766 * 192.26848 * 3 2 1 30 30 H 1.09003 * 109.46539 * 312.26463 * 3 2 1 31 31 H 0.96997 * 119.99997 * 0.02562 * 6 4 3 32 32 H 0.97006 * 120.00647 * 180.02562 * 10 9 7 33 33 H 1.08998 * 109.47082 * 62.28269 * 17 15 2 34 34 H 1.09006 * 109.47520 * 302.28077 * 17 15 2 35 35 H 1.09001 * 109.46862 * 54.83056 * 18 17 15 36 36 H 1.09004 * 109.46720 * 294.83386 * 18 17 15 37 37 H 0.96697 * 114.00123 * 179.97438 * 19 18 17 38 38 H 1.08003 * 120.00165 * 359.97438 * 21 20 15 39 39 H 1.07994 * 120.00027 * 180.27662 * 22 21 20 40 40 H 1.08003 * 120.00480 * 179.83867 * 23 22 21 41 41 H 1.07999 * 119.99847 * 180.02562 * 24 23 22 42 42 H 1.08002 * 120.00063 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.7716 1.9955 1.3532 5 8 1.2272 1.3601 2.2315 6 7 2.1760 3.2595 1.5876 7 6 1.9726 3.8272 2.8189 8 1 1.4880 3.2615 3.6010 9 6 2.3891 5.1306 3.0603 10 7 2.9783 5.8190 2.1088 11 14 2.1114 5.9042 4.7379 12 1 3.2832 5.6322 5.6085 13 1 1.9389 7.3712 4.5840 14 1 0.8913 5.3243 5.3545 15 6 1.9954 -0.7661 -1.1376 16 1 1.7331 -0.2619 -2.0677 17 6 3.5178 -0.8668 -1.0239 18 6 4.0716 -1.6155 -2.2380 19 8 5.4998 -1.6050 -2.1933 20 6 1.3986 -2.1498 -1.1307 21 6 1.2354 -2.8262 0.0638 22 6 0.6839 -4.0938 0.0706 23 6 0.3040 -4.6886 -1.1180 24 6 0.4720 -4.0143 -2.3130 25 6 1.0195 -2.7450 -2.3194 26 1 -0.3633 -1.0252 0.0709 27 1 -0.3632 0.5740 0.8525 28 1 -0.3633 0.4513 -0.9232 29 1 3.0632 1.3506 -0.2184 30 1 1.4805 1.9582 -0.7606 31 1 2.6109 3.7677 0.8852 32 1 3.2695 6.7289 2.2774 33 1 3.7793 -1.4066 -0.1138 34 1 3.9466 0.1348 -0.9882 35 1 3.7330 -1.1269 -3.1516 36 1 3.7151 -2.6455 -2.2232 37 1 5.9198 -2.0632 -2.9340 38 1 1.5361 -2.3632 0.9921 39 1 0.5523 -4.6204 1.0042 40 1 -0.1245 -5.6800 -1.1131 41 1 0.1748 -4.4788 -3.2416 42 1 1.1504 -2.2180 -3.2530 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075899736.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:47 Heat of formation + Delta-G solvation = -75.532030 kcal Electronic energy + Delta-G solvation = -23443.465230 eV Core-core repulsion = 20001.608044 eV Total energy + Delta-G solvation = -3441.857186 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.06352 -39.97809 -38.25841 -37.45000 -35.89280 -33.62854 -33.24888 -31.72323 -31.26204 -29.25737 -27.35843 -26.48132 -23.92181 -23.61443 -23.05399 -21.20508 -20.69215 -19.83653 -18.42494 -18.07311 -17.45847 -16.90290 -16.71223 -16.41953 -16.03374 -15.72994 -15.66680 -15.36495 -15.08112 -14.90633 -14.30495 -14.16659 -14.01576 -13.82605 -13.62822 -13.42980 -13.19527 -12.92282 -12.65742 -12.47565 -12.40977 -12.34105 -12.12300 -12.08028 -11.81965 -11.54807 -11.46199 -10.85618 -10.31854 -9.99279 -9.73499 -9.55167 -9.22479 -8.45434 -5.94008 0.47421 0.57443 1.38018 1.41177 1.54058 2.07149 2.28075 2.62617 2.93065 3.20946 3.28515 3.52142 3.72673 3.98714 4.13488 4.18244 4.21442 4.25873 4.34315 4.37812 4.40477 4.44753 4.52360 4.57491 4.60155 4.70897 4.73704 4.80457 5.02188 5.08663 5.17670 5.20323 5.25755 5.41608 5.60660 5.69915 5.71821 5.89543 6.07255 6.16559 6.22567 6.62263 6.93883 7.14423 7.58070 8.14392 8.72160 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.021336 B = 0.003579 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.012180 B = 7821.166162 C = 8643.401757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.527 5.527 3 C 0.053 3.947 4 C 0.444 3.556 5 O -0.614 6.614 6 N -0.576 5.576 7 C -0.332 4.332 8 H 0.078 0.922 9 C -0.013 4.013 10 N -0.922 5.922 11 Si 0.992 3.008 12 H -0.272 1.272 13 H -0.270 1.270 14 H -0.273 1.273 15 C 0.133 3.867 16 H 0.067 0.933 17 C -0.113 4.113 18 C 0.087 3.913 19 O -0.596 6.596 20 C -0.084 4.084 21 C -0.110 4.110 22 C -0.134 4.134 23 C -0.124 4.124 24 C -0.122 4.122 25 C -0.117 4.117 26 H 0.074 0.926 27 H 0.049 0.951 28 H 0.033 0.967 29 H 0.108 0.892 30 H 0.070 0.930 31 H 0.395 0.605 32 H 0.277 0.723 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.398 0.602 38 H 0.104 0.896 39 H 0.127 0.873 40 H 0.142 0.858 41 H 0.148 0.852 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.454 -17.559 -15.139 23.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.251 5.251 3 C -0.078 4.078 4 C 0.231 3.769 5 O -0.499 6.499 6 N -0.214 5.214 7 C -0.461 4.461 8 H 0.096 0.904 9 C -0.213 4.213 10 N -0.563 5.563 11 Si 0.816 3.184 12 H -0.197 1.197 13 H -0.195 1.195 14 H -0.198 1.198 15 C 0.025 3.975 16 H 0.084 0.916 17 C -0.150 4.150 18 C 0.009 3.991 19 O -0.405 6.405 20 C -0.085 4.085 21 C -0.128 4.128 22 C -0.152 4.152 23 C -0.142 4.142 24 C -0.140 4.140 25 C -0.136 4.136 26 H 0.093 0.907 27 H 0.068 0.932 28 H 0.051 0.949 29 H 0.126 0.874 30 H 0.088 0.912 31 H 0.229 0.771 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.248 0.752 38 H 0.123 0.877 39 H 0.145 0.855 40 H 0.160 0.840 41 H 0.166 0.834 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.706 -17.675 -13.584 22.357 hybrid contribution 0.014 1.068 -0.285 1.106 sum -1.692 -16.607 -13.869 21.702 Atomic orbital electron populations 1.22297 0.86544 1.02261 0.99955 1.61410 1.08661 1.12039 1.43015 1.21815 1.02542 0.89677 0.93775 1.20731 0.83024 0.82125 0.91021 1.90477 1.48046 1.63029 1.48375 1.41926 1.53693 1.12247 1.13500 1.19648 1.38154 0.97318 0.90997 0.90408 1.26021 0.96103 0.96278 1.02879 1.69669 1.40278 1.11903 1.34414 0.84941 0.78689 0.77447 0.77332 1.19732 1.19466 1.19775 1.20473 0.93544 0.91325 0.92129 0.91566 1.21546 0.93218 1.01335 0.98946 1.22069 0.80420 0.99469 0.97142 1.86446 1.19906 1.80927 1.53203 1.19687 0.99851 0.94903 0.94012 1.21081 0.98810 0.94906 0.98021 1.21372 0.99396 0.95097 0.99362 1.21452 0.99654 1.00797 0.92274 1.21410 0.99004 0.94623 0.98965 1.21225 0.98974 0.96126 0.97245 0.90729 0.93231 0.94884 0.87419 0.91177 0.77119 0.91337 0.92597 0.91446 0.91701 0.92715 0.75203 0.87740 0.85471 0.84019 0.83436 0.84227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.23 8.75 127.69 1.12 2.35 16 2 N -0.53 -17.68 3.62 -906.04 -3.28 -20.96 16 3 C 0.05 1.92 5.33 85.55 0.46 2.38 16 4 C 0.44 21.86 7.49 87.65 0.66 22.52 16 5 O -0.61 -34.88 14.44 -3.08 -0.04 -34.93 16 6 N -0.58 -30.44 5.29 -306.99 -1.62 -32.06 16 7 C -0.33 -19.28 9.68 84.04 0.81 -18.47 16 8 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 9 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 10 N -0.92 -50.69 13.05 21.66 0.28 -50.40 16 11 Si 0.99 43.85 29.55 68.60 2.03 45.88 16 12 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 13 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 14 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 15 C 0.13 3.38 1.78 44.17 0.08 3.46 16 16 H 0.07 1.45 8.00 -2.38 -0.02 1.43 16 17 C -0.11 -2.93 5.00 30.59 0.15 -2.78 16 18 C 0.09 1.70 6.55 71.98 0.47 2.17 16 19 O -0.60 -12.65 13.66 -148.98 -2.03 -14.68 16 20 C -0.08 -1.97 2.96 -19.87 -0.06 -2.02 16 21 C -0.11 -2.90 7.92 22.27 0.18 -2.72 16 22 C -0.13 -2.91 10.05 22.27 0.22 -2.69 16 23 C -0.12 -2.11 10.05 22.27 0.22 -1.89 16 24 C -0.12 -1.89 10.05 22.27 0.22 -1.67 16 25 C -0.12 -2.08 8.88 22.27 0.20 -1.88 16 26 H 0.07 2.30 5.96 -2.39 -0.01 2.29 16 27 H 0.05 2.01 6.40 -2.38 -0.02 2.00 16 28 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.11 3.59 5.67 -2.39 -0.01 3.58 16 30 H 0.07 2.26 8.05 -2.39 -0.02 2.24 16 31 H 0.40 19.86 7.90 -92.71 -0.73 19.13 16 32 H 0.28 14.25 8.31 -92.70 -0.77 13.48 16 33 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.07 1.88 6.04 -2.38 -0.01 1.87 16 35 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.05 1.00 7.02 -2.38 -0.02 0.98 16 37 H 0.40 4.21 9.12 -74.06 -0.68 3.53 16 38 H 0.10 3.37 7.73 -2.91 -0.02 3.35 16 39 H 0.13 2.44 8.06 -2.91 -0.02 2.41 16 40 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 41 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 42 H 0.14 1.81 8.04 -2.91 -0.02 1.79 16 Total: -1.00 -72.22 344.91 0.16 -72.05 By element: Atomic # 1 Polarization: 36.97 SS G_CDS: -0.36 Total: 36.61 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: 5.20 Total: -1.51 kcal Atomic # 7 Polarization: -98.80 SS G_CDS: -4.62 Total: -103.42 kcal Atomic # 8 Polarization: -47.53 SS G_CDS: -2.08 Total: -49.61 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -72.22 0.16 -72.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075899736.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.478 kcal (2) G-P(sol) polarization free energy of solvation -72.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds