Wall clock time and date at job start Tue Mar 31 2020 02:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47391 * 2 1 4 4 C 1.52998 * 109.47034 * 120.00236 * 2 1 3 5 5 C 1.50699 * 109.47198 * 174.99903 * 4 2 1 6 6 C 1.39638 * 126.05826 * 124.99913 * 5 4 2 7 7 C 1.38488 * 105.35526 * 179.97438 * 6 5 4 8 8 C 1.47002 * 126.89561 * 179.97438 * 7 6 5 9 9 O 1.21551 * 120.00166 * 0.02562 * 8 7 6 10 10 O 1.34821 * 120.00220 * 179.97438 * 8 7 6 11 11 C 1.45201 * 116.99984 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.46574 * 184.75031 * 11 10 8 13 13 C 1.50695 * 115.54910 * 301.70265 * 12 11 10 14 14 H 1.08004 * 120.00188 * 95.22482 * 13 12 11 15 15 C 1.37882 * 120.00197 * 275.21453 * 13 12 11 16 16 N 1.31511 * 119.99935 * 7.13403 * 15 13 12 17 17 Si 1.86796 * 119.99908 * 187.12639 * 15 13 12 18 18 H 1.48499 * 109.47347 * 270.00125 * 17 15 13 19 19 H 1.48501 * 109.47512 * 30.00335 * 17 15 13 20 20 H 1.48501 * 109.47033 * 150.00450 * 17 15 13 21 21 C 1.52996 * 117.50037 * 87.37877 * 12 11 10 22 22 C 1.53005 * 117.49471 * 156.04036 * 12 11 10 23 23 N 1.36646 * 106.20975 * 0.22631 * 7 6 5 24 24 H 0.97005 * 125.19670 * 179.76649 * 23 7 6 25 25 N 1.28445 * 109.61238 * 359.61350 * 23 7 6 26 26 H 1.08997 * 109.47453 * 300.00013 * 1 2 3 27 27 H 1.09008 * 109.46906 * 59.99779 * 1 2 3 28 28 H 1.08994 * 109.47303 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46775 * 239.99919 * 2 1 3 30 30 H 1.08999 * 109.47145 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47109 * 300.00303 * 3 2 1 32 32 H 1.09004 * 109.47146 * 59.99660 * 3 2 1 33 33 H 1.09002 * 109.47275 * 54.99946 * 4 2 1 34 34 H 1.09000 * 109.46937 * 295.00222 * 4 2 1 35 35 H 1.08003 * 127.32760 * 359.97438 * 6 5 4 36 36 H 1.08995 * 109.47036 * 64.75165 * 11 10 8 37 37 H 1.09003 * 109.47139 * 304.74475 * 11 10 8 38 38 H 0.96997 * 119.99758 * 355.38070 * 16 15 13 39 39 H 1.09000 * 117.49641 * 214.99532 * 21 12 11 40 40 H 1.08999 * 117.50146 * 0.02562 * 21 12 11 41 41 H 1.09000 * 117.49814 * 359.96985 * 22 12 11 42 42 H 1.08996 * 117.49568 * 144.97138 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5418 -0.8295 1.1889 6 6 4.4377 -0.3846 2.1632 7 6 5.6955 -0.6967 1.6748 8 6 6.9860 -0.4339 2.3278 9 8 7.0179 0.1121 3.4133 10 8 8.1343 -0.7995 1.7232 11 6 9.3710 -0.5092 2.4265 12 6 10.5612 -0.8847 1.5414 13 6 10.6138 -2.3245 1.0995 14 1 10.2083 -2.6101 0.1401 15 6 11.1797 -3.2772 1.9200 16 7 11.5460 -2.9587 3.1423 17 14 11.4261 -5.0204 1.2954 18 1 10.2202 -5.8310 1.6018 19 1 11.6447 -4.9938 -0.1731 20 1 12.6093 -5.6221 1.9612 21 6 11.0763 0.1735 0.5639 22 6 11.8919 -0.1792 1.8104 23 7 5.4964 -1.2927 0.4614 24 1 6.1984 -1.6192 -0.1231 25 7 4.2376 -1.3575 0.2142 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6053 -1.7199 1.2951 34 1 1.7515 -0.1584 2.1369 35 1 4.2004 0.0998 3.0988 36 1 9.4082 -1.0872 3.3498 37 1 9.4143 0.5543 2.6615 38 1 11.4802 -2.0393 3.4442 39 1 11.4533 -0.1716 -0.3988 40 1 10.5677 1.1375 0.5517 41 1 11.9193 0.5528 2.6176 42 1 12.8054 -0.7566 1.6680 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076091121.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:51:07 Heat of formation + Delta-G solvation = -31.381658 kcal Electronic energy + Delta-G solvation = -22997.669111 eV Core-core repulsion = 19557.726428 eV Total energy + Delta-G solvation = -3439.942682 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.70679 -41.32543 -38.90984 -37.41168 -37.22505 -34.03461 -33.03212 -32.25423 -28.98480 -28.06558 -27.87733 -27.00642 -25.13155 -23.18615 -22.08601 -22.03525 -21.56032 -20.47995 -19.90586 -18.92476 -17.98646 -17.64182 -16.84329 -16.56475 -16.00102 -15.85048 -15.65645 -15.12648 -14.88196 -14.75028 -14.62754 -14.57424 -14.08116 -13.89713 -13.39162 -13.05418 -12.95671 -12.73387 -12.70860 -12.32194 -12.28517 -11.97187 -11.95606 -11.90590 -11.81715 -11.68890 -11.51649 -11.34649 -10.58228 -10.49782 -10.43206 -10.36568 -10.18328 -8.59486 -6.33722 -0.14995 1.34016 1.39924 1.52541 1.59572 1.75741 1.77218 1.80318 2.54584 3.11904 3.16433 3.41636 3.56049 3.79442 3.90201 4.08630 4.13587 4.14860 4.20051 4.27647 4.36647 4.38851 4.55096 4.69268 4.75891 4.81680 4.86996 4.92152 4.93552 4.99499 5.10331 5.10911 5.15060 5.27870 5.34369 5.37787 5.43638 5.50026 5.57138 5.88275 6.08752 6.18659 6.45739 6.64843 6.87649 7.46846 8.80718 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.022001 B = 0.003397 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.364834 B = 8239.470931 C = 8789.746360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.089 4.089 3 C -0.145 4.145 4 C -0.029 4.029 5 C 0.032 3.968 6 C -0.143 4.143 7 C -0.034 4.034 8 C 0.529 3.471 9 O -0.526 6.526 10 O -0.340 6.340 11 C 0.124 3.876 12 C -0.021 4.021 13 C -0.574 4.574 14 H 0.047 0.953 15 C -0.020 4.020 16 N -0.931 5.931 17 Si 1.111 2.889 18 H -0.280 1.280 19 H -0.270 1.270 20 H -0.284 1.284 21 C -0.166 4.166 22 C -0.164 4.164 23 N -0.359 5.359 24 H 0.458 0.542 25 N -0.264 5.264 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.031 0.969 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.181 0.819 36 H 0.040 0.960 37 H 0.061 0.939 38 H 0.265 0.735 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.998 6.460 -5.667 20.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.109 4.109 3 C -0.202 4.202 4 C -0.068 4.068 5 C -0.124 4.124 6 C -0.171 4.171 7 C -0.161 4.161 8 C 0.374 3.626 9 O -0.415 6.415 10 O -0.255 6.255 11 C 0.051 3.949 12 C -0.022 4.022 13 C -0.612 4.612 14 H 0.066 0.934 15 C -0.220 4.220 16 N -0.567 5.567 17 Si 0.933 3.067 18 H -0.206 1.206 19 H -0.195 1.195 20 H -0.210 1.210 21 C -0.203 4.203 22 C -0.202 4.202 23 N -0.076 5.076 24 H 0.306 0.694 25 N -0.100 5.100 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.050 0.950 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.109 0.891 34 H 0.121 0.879 35 H 0.198 0.802 36 H 0.059 0.941 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.105 0.895 40 H 0.113 0.887 41 H 0.107 0.893 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -18.491 4.622 -5.900 19.952 hybrid contribution 0.691 1.771 0.421 1.947 sum -17.800 6.393 -5.479 19.691 Atomic orbital electron populations 1.21803 0.93355 1.02373 1.02475 1.21056 0.96693 0.95840 0.97275 1.21825 0.99768 0.96309 1.02291 1.20247 0.83686 1.02678 1.00196 1.22465 0.98460 1.00679 0.90837 1.22375 0.88327 1.03995 1.02436 1.20602 0.92604 1.10896 0.91989 1.20213 0.84135 0.75183 0.83116 1.90827 1.88038 1.41321 1.21359 1.86594 1.14957 1.74197 1.49753 1.22675 0.80036 0.97999 0.94234 1.19129 0.89998 0.93931 0.99094 1.21471 1.42260 0.91916 1.05526 0.93448 1.27057 0.92949 1.08392 0.93579 1.70838 1.47612 1.21444 1.16830 0.83002 0.77037 0.70974 0.75639 1.20630 1.19463 1.20987 1.22956 1.04129 0.98982 0.94205 1.22754 0.95214 1.02588 0.99616 1.43782 1.06433 1.42650 1.14761 0.69434 1.73111 0.89800 1.20676 1.26416 0.91591 0.92377 0.92050 0.91986 0.95010 0.92438 0.91580 0.89088 0.87853 0.80197 0.94146 0.92043 0.92493 0.89483 0.88681 0.89281 0.90822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.19 71.98 0.66 -0.87 16 2 C -0.09 -1.34 2.90 -10.80 -0.03 -1.37 16 3 C -0.14 -2.30 9.01 71.98 0.65 -1.65 16 4 C -0.03 -0.46 5.27 29.85 0.16 -0.30 16 5 C 0.03 0.75 5.47 43.04 0.24 0.98 16 6 C -0.14 -3.75 10.77 22.67 0.24 -3.51 16 7 C -0.03 -1.09 7.21 40.75 0.29 -0.79 16 8 C 0.53 20.59 7.95 70.12 0.56 21.15 16 9 O -0.53 -22.39 16.65 19.67 0.33 -22.06 16 10 O -0.34 -14.58 10.05 -57.33 -0.58 -15.15 16 11 C 0.12 5.70 5.31 71.98 0.38 6.08 16 12 C -0.02 -1.00 1.20 -52.93 -0.06 -1.07 16 13 C -0.57 -30.93 8.64 25.60 0.22 -30.70 16 14 H 0.05 2.56 7.82 -2.91 -0.02 2.54 16 15 C -0.02 -1.09 5.39 84.66 0.46 -0.63 16 16 N -0.93 -54.62 13.57 21.45 0.29 -54.33 16 17 Si 1.11 49.20 29.91 68.60 2.05 51.26 16 18 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 19 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 21 C -0.17 -6.67 9.94 30.62 0.30 -6.37 16 22 C -0.16 -7.15 8.75 30.62 0.27 -6.88 16 23 N -0.36 -10.16 6.94 -48.04 -0.33 -10.49 16 24 H 0.46 11.89 8.96 -220.00 -1.97 9.92 16 25 N -0.26 -6.99 12.07 -47.51 -0.57 -7.57 16 26 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.06 1.12 8.09 -2.39 -0.02 1.10 16 30 H 0.03 0.64 7.38 -2.39 -0.02 0.62 16 31 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.10 1.22 8.12 -2.39 -0.02 1.20 16 35 H 0.18 4.06 8.06 -2.91 -0.02 4.04 16 36 H 0.04 2.07 7.76 -2.39 -0.02 2.05 16 37 H 0.06 2.57 8.01 -2.39 -0.02 2.55 16 38 H 0.26 15.46 6.15 -92.71 -0.57 14.89 16 39 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 40 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 41 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 42 H 0.07 3.45 8.14 -2.39 -0.02 3.43 16 Total: -1.00 -65.29 359.27 4.77 -60.53 By element: Atomic # 1 Polarization: 24.52 SS G_CDS: -0.76 Total: 23.76 kcal Atomic # 6 Polarization: -30.27 SS G_CDS: 4.33 Total: -25.94 kcal Atomic # 7 Polarization: -71.77 SS G_CDS: -0.62 Total: -72.39 kcal Atomic # 8 Polarization: -36.97 SS G_CDS: -0.25 Total: -37.22 kcal Atomic # 14 Polarization: 49.20 SS G_CDS: 2.05 Total: 51.26 kcal Total: -65.29 4.77 -60.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076091121.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.144 kcal (2) G-P(sol) polarization free energy of solvation -65.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds