Wall clock time and date at job start Tue Mar 31 2020 03:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46905 * 110.99739 * 2 1 4 4 C 1.46904 * 110.99976 * 123.94897 * 2 1 3 5 5 C 1.52996 * 109.46897 * 66.04562 * 4 2 1 6 6 N 1.46500 * 109.47128 * 179.97438 * 5 4 2 7 7 C 1.34774 * 120.00119 * 180.02562 * 6 5 4 8 8 O 1.21282 * 120.00304 * 0.02562 * 7 6 5 9 9 C 1.50704 * 120.00135 * 180.02562 * 7 6 5 10 10 C 1.50699 * 109.47208 * 180.02562 * 9 7 6 11 11 C 1.38328 * 119.96230 * 269.97915 * 10 9 7 12 12 C 1.38281 * 120.13505 * 180.02562 * 11 10 9 13 13 C 1.38120 * 120.06679 * 359.68445 * 12 11 10 14 14 C 1.38852 * 119.93490 * 0.58817 * 13 12 11 15 15 O 1.35752 * 120.07221 * 179.70368 * 14 13 12 16 16 C 1.34829 * 116.99954 * 354.17311 * 15 14 13 17 17 H 1.07998 * 119.99999 * 5.03596 * 16 15 14 18 18 C 1.38656 * 119.99670 * 185.03445 * 16 15 14 19 19 N 1.31550 * 120.00275 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99668 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46814 * 90.00164 * 20 18 16 22 22 H 1.48501 * 109.47378 * 210.00272 * 20 18 16 23 23 H 1.48503 * 109.47143 * 330.00397 * 20 18 16 24 24 C 1.38073 * 119.96534 * 89.99715 * 10 9 7 25 25 H 1.09006 * 109.47110 * 296.04834 * 1 2 3 26 26 H 1.09002 * 109.46927 * 56.05122 * 1 2 3 27 27 H 1.08994 * 109.47092 * 176.05001 * 1 2 3 28 28 H 1.08998 * 109.46777 * 183.95412 * 3 2 1 29 29 H 1.09005 * 109.47026 * 303.94536 * 3 2 1 30 30 H 1.08999 * 109.47647 * 63.95335 * 3 2 1 31 31 H 1.09002 * 109.46748 * 306.04842 * 4 2 1 32 32 H 1.08998 * 109.47261 * 186.05138 * 4 2 1 33 33 H 1.09008 * 109.46644 * 60.00151 * 5 4 2 34 34 H 1.08998 * 109.47635 * 300.00346 * 5 4 2 35 35 H 0.97001 * 119.99420 * 0.02562 * 6 5 4 36 36 H 1.09002 * 109.46571 * 59.99894 * 9 7 6 37 37 H 1.08992 * 109.46782 * 300.00158 * 9 7 6 38 38 H 1.08001 * 119.93314 * 0.02562 * 11 10 9 39 39 H 1.07993 * 119.96315 * 179.97438 * 12 11 10 40 40 H 1.08001 * 120.03256 * 180.31909 * 13 12 11 41 41 H 0.96999 * 119.99936 * 179.97438 * 19 18 16 42 42 H 1.07996 * 120.03547 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1377 5 6 1.6315 -2.2425 0.9705 6 7 2.1570 -3.0064 2.1047 7 6 1.9566 -4.3375 2.1715 8 8 1.3416 -4.9031 1.2923 9 6 2.4967 -5.1233 3.3385 10 6 2.1393 -6.5779 3.1732 11 6 0.9528 -7.0614 3.6947 12 6 0.6216 -8.3957 3.5455 13 6 1.4721 -9.2484 2.8693 14 6 2.6665 -8.7674 2.3496 15 8 3.5073 -9.6043 1.6898 16 6 3.1833 -10.9130 1.6777 17 1 2.2489 -11.2420 2.1078 18 6 4.0499 -11.8365 1.1130 19 7 5.1883 -11.4358 0.5895 20 14 3.6014 -13.6498 1.0969 21 1 2.8527 -13.9635 -0.1466 22 1 4.8404 -14.4667 1.1482 23 1 2.7543 -13.9607 2.2764 24 6 2.9967 -7.4267 2.5017 25 1 -0.3634 0.4513 0.9233 26 1 -0.3633 0.5739 -0.8525 27 1 -0.3633 -1.0252 -0.0708 28 1 3.0827 1.3433 -0.0709 29 1 1.5899 1.9163 -0.8526 30 1 1.7044 1.8725 0.9232 31 1 1.5611 -0.3871 2.0628 32 1 3.0797 -0.6610 1.1758 33 1 2.0659 -2.6213 0.0453 34 1 0.5472 -2.3474 0.9324 35 1 2.6492 -2.5542 2.8077 36 1 2.0619 -4.7448 4.2637 37 1 3.5808 -5.0180 3.3768 38 1 0.2838 -6.3955 4.2194 39 1 -0.3052 -8.7703 3.9541 40 1 1.2104 -10.2893 2.7486 41 1 5.7946 -12.0819 0.1948 42 1 3.9232 -7.0488 2.0955 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090010734.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:18 Heat of formation + Delta-G solvation = -33.390842 kcal Electronic energy + Delta-G solvation = -22233.994927 eV Core-core repulsion = 18793.965120 eV Total energy + Delta-G solvation = -3440.029807 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.81514 -38.78191 -37.91930 -36.41182 -34.59730 -32.35814 -31.97322 -29.83527 -29.04419 -27.98476 -26.94850 -25.20959 -24.19692 -21.65968 -21.51945 -21.14775 -20.08277 -17.62578 -17.03764 -16.84124 -16.32656 -16.16204 -15.32598 -15.18602 -14.92772 -14.67097 -14.42000 -14.29671 -13.79034 -13.59485 -13.29104 -13.26710 -12.77645 -12.56977 -12.36135 -12.26408 -12.13241 -11.87784 -11.75357 -11.52282 -11.34531 -11.21226 -10.76668 -10.72189 -10.55098 -10.39387 -9.70708 -9.26573 -9.08333 -8.81361 -8.77077 -7.98931 -7.14167 -6.37484 -3.96343 2.16204 2.46795 2.83007 3.04009 3.18091 3.18344 3.23092 3.78194 4.02742 4.49035 4.61127 4.68490 4.80368 4.94165 4.96832 5.07546 5.15733 5.17627 5.19421 5.22220 5.32630 5.46151 5.52609 5.56540 5.67034 5.73362 5.79809 5.83476 6.00588 6.25179 6.34010 6.41524 6.55868 6.58926 6.73475 6.99524 7.14590 7.34276 7.43911 7.48554 7.51934 7.90720 8.07801 8.36867 9.08336 9.79930 10.80933 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.027041 B = 0.002571 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.232994 B =10886.457684 C =11390.651998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.544 5.544 3 C 0.025 3.975 4 C 0.045 3.955 5 C 0.121 3.879 6 N -0.740 5.740 7 C 0.514 3.486 8 O -0.517 6.517 9 C -0.093 4.093 10 C -0.033 4.033 11 C -0.197 4.197 12 C -0.075 4.075 13 C -0.231 4.231 14 C 0.154 3.846 15 O -0.180 6.180 16 C -0.390 4.390 17 H 0.091 0.909 18 C 0.038 3.962 19 N -0.865 5.865 20 Si 0.940 3.060 21 H -0.274 1.274 22 H -0.278 1.278 23 H -0.268 1.268 24 C -0.174 4.174 25 H 0.026 0.974 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.025 0.975 31 H 0.040 0.960 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.397 0.603 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.126 0.874 41 H 0.269 0.731 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.204 22.040 4.930 23.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.268 5.268 3 C -0.123 4.123 4 C -0.084 4.084 5 C -0.003 4.003 6 N -0.395 5.395 7 C 0.300 3.700 8 O -0.390 6.390 9 C -0.133 4.133 10 C -0.034 4.034 11 C -0.216 4.216 12 C -0.094 4.094 13 C -0.250 4.250 14 C 0.101 3.899 15 O -0.084 6.084 16 C -0.466 4.466 17 H 0.109 0.891 18 C -0.166 4.166 19 N -0.500 5.500 20 Si 0.765 3.235 21 H -0.199 1.199 22 H -0.203 1.203 23 H -0.192 1.192 24 C -0.193 4.193 25 H 0.045 0.955 26 H 0.089 0.911 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.044 0.956 31 H 0.058 0.942 32 H 0.100 0.900 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.231 0.769 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.125 0.875 40 H 0.144 0.856 41 H 0.079 0.921 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.092 21.312 3.586 22.454 hybrid contribution -0.338 -0.223 1.034 1.111 sum -6.430 21.089 4.620 22.526 Atomic orbital electron populations 1.22511 0.86949 1.02973 1.00601 1.61845 1.08411 1.14015 1.42575 1.22395 1.00942 0.88330 1.00625 1.22281 1.00855 0.93319 0.91931 1.21231 0.99428 0.89472 0.90140 1.45947 1.59366 1.08236 1.25953 1.20757 0.79821 0.81395 0.88019 1.90769 1.39391 1.69221 1.39643 1.20585 1.02665 0.93205 0.96838 1.18659 0.94722 0.91927 0.98082 1.20344 0.97742 0.95626 1.07841 1.20673 0.97922 0.93335 0.97427 1.21170 0.96524 1.00943 1.06364 1.19278 0.89675 0.90675 0.90249 1.83977 1.44281 1.18043 1.62073 1.21315 1.05560 0.79385 1.40386 0.89140 1.25272 0.94956 1.00024 0.96334 1.70040 1.09022 1.35070 1.35895 0.85722 0.78135 0.80619 0.78994 1.19925 1.20316 1.19240 1.19950 1.01531 0.91612 1.06238 0.95493 0.91128 0.90670 0.91145 0.91087 0.95594 0.94189 0.90014 0.90567 0.91591 0.76915 0.88437 0.88222 0.87985 0.87507 0.85637 0.92128 0.86817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.32 60.07 0.56 0.69 16 2 N -0.54 -4.43 5.02 -251.25 -1.26 -5.69 16 3 C 0.03 0.15 9.57 60.07 0.57 0.73 16 4 C 0.04 0.34 5.07 -3.82 -0.02 0.32 16 5 C 0.12 1.26 5.60 -4.04 -0.02 1.24 16 6 N -0.74 -7.68 5.56 -60.29 -0.33 -8.01 16 7 C 0.51 7.58 7.82 -10.98 -0.09 7.50 16 8 O -0.52 -10.38 16.03 5.56 0.09 -10.29 16 9 C -0.09 -1.25 5.83 -29.03 -0.17 -1.42 16 10 C -0.03 -0.62 4.37 -104.65 -0.46 -1.08 16 11 C -0.20 -3.64 9.70 -39.53 -0.38 -4.02 16 12 C -0.08 -1.48 10.04 -39.61 -0.40 -1.88 16 13 C -0.23 -5.33 9.17 -39.40 -0.36 -5.69 16 14 C 0.15 3.95 6.65 -39.11 -0.26 3.69 16 15 O -0.18 -5.35 9.76 0.05 0.00 -5.35 16 16 C -0.39 -11.29 9.49 30.89 0.29 -10.99 16 17 H 0.09 2.43 5.21 -52.49 -0.27 2.15 16 18 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 19 N -0.86 -26.05 13.67 55.48 0.76 -25.29 16 20 Si 0.94 21.11 29.55 -169.99 -5.02 16.09 16 21 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 24 C -0.17 -3.90 9.65 -39.39 -0.38 -4.28 16 25 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 26 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 27 H 0.07 0.61 6.47 -51.93 -0.34 0.27 16 28 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 29 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 30 H 0.03 0.14 8.14 -51.93 -0.42 -0.28 16 31 H 0.04 0.27 8.12 -51.93 -0.42 -0.15 16 32 H 0.08 0.56 8.06 -51.93 -0.42 0.14 16 33 H 0.08 0.96 8.14 -51.92 -0.42 0.54 16 34 H 0.07 0.75 6.55 -51.93 -0.34 0.41 16 35 H 0.40 2.70 8.47 -40.82 -0.35 2.35 16 36 H 0.10 0.99 8.09 -51.93 -0.42 0.57 16 37 H 0.10 1.13 8.08 -51.93 -0.42 0.72 16 38 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 39 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 40 H 0.13 2.87 5.64 -52.49 -0.30 2.58 16 41 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.11 2.47 8.06 -52.49 -0.42 2.05 16 LS Contribution 354.64 15.07 5.34 5.34 Total: -1.00 -35.59 354.64 -7.84 -43.43 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -6.21 Total: 4.00 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: -1.21 Total: -14.23 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: -0.84 Total: -38.99 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: 0.09 Total: -15.65 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.59 -7.84 -43.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090010734.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.043 kcal (2) G-P(sol) polarization free energy of solvation -35.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds