Wall clock time and date at job start Tue Mar 31 2020 03:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46905 * 110.99739 * 2 1 4 4 C 1.46904 * 110.99976 * 123.94897 * 2 1 3 5 5 C 1.52996 * 109.46897 * 66.04562 * 4 2 1 6 6 N 1.46500 * 109.47128 * 179.97438 * 5 4 2 7 7 C 1.34774 * 120.00119 * 180.02562 * 6 5 4 8 8 O 1.21282 * 120.00304 * 0.02562 * 7 6 5 9 9 C 1.50704 * 120.00135 * 180.02562 * 7 6 5 10 10 C 1.50699 * 109.47208 * 180.02562 * 9 7 6 11 11 C 1.38328 * 119.96230 * 269.97915 * 10 9 7 12 12 C 1.38281 * 120.13505 * 180.02562 * 11 10 9 13 13 C 1.38120 * 120.06679 * 359.68445 * 12 11 10 14 14 C 1.38852 * 119.93490 * 0.58817 * 13 12 11 15 15 O 1.35752 * 120.07221 * 179.70368 * 14 13 12 16 16 C 1.34829 * 116.99954 * 354.17311 * 15 14 13 17 17 H 1.07998 * 119.99999 * 5.03596 * 16 15 14 18 18 C 1.38656 * 119.99670 * 185.03445 * 16 15 14 19 19 N 1.31550 * 120.00275 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99668 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46814 * 90.00164 * 20 18 16 22 22 H 1.48501 * 109.47378 * 210.00272 * 20 18 16 23 23 H 1.48503 * 109.47143 * 330.00397 * 20 18 16 24 24 C 1.38073 * 119.96534 * 89.99715 * 10 9 7 25 25 H 1.09006 * 109.47110 * 296.04834 * 1 2 3 26 26 H 1.09002 * 109.46927 * 56.05122 * 1 2 3 27 27 H 1.08994 * 109.47092 * 176.05001 * 1 2 3 28 28 H 1.08998 * 109.46777 * 183.95412 * 3 2 1 29 29 H 1.09005 * 109.47026 * 303.94536 * 3 2 1 30 30 H 1.08999 * 109.47647 * 63.95335 * 3 2 1 31 31 H 1.09002 * 109.46748 * 306.04842 * 4 2 1 32 32 H 1.08998 * 109.47261 * 186.05138 * 4 2 1 33 33 H 1.09008 * 109.46644 * 60.00151 * 5 4 2 34 34 H 1.08998 * 109.47635 * 300.00346 * 5 4 2 35 35 H 0.97001 * 119.99420 * 0.02562 * 6 5 4 36 36 H 1.09002 * 109.46571 * 59.99894 * 9 7 6 37 37 H 1.08992 * 109.46782 * 300.00158 * 9 7 6 38 38 H 1.08001 * 119.93314 * 0.02562 * 11 10 9 39 39 H 1.07993 * 119.96315 * 179.97438 * 12 11 10 40 40 H 1.08001 * 120.03256 * 180.31909 * 13 12 11 41 41 H 0.96999 * 119.99936 * 179.97438 * 19 18 16 42 42 H 1.07996 * 120.03547 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1377 5 6 1.6315 -2.2425 0.9705 6 7 2.1570 -3.0064 2.1047 7 6 1.9566 -4.3375 2.1715 8 8 1.3416 -4.9031 1.2923 9 6 2.4967 -5.1233 3.3385 10 6 2.1393 -6.5779 3.1732 11 6 0.9528 -7.0614 3.6947 12 6 0.6216 -8.3957 3.5455 13 6 1.4721 -9.2484 2.8693 14 6 2.6665 -8.7674 2.3496 15 8 3.5073 -9.6043 1.6898 16 6 3.1833 -10.9130 1.6777 17 1 2.2489 -11.2420 2.1078 18 6 4.0499 -11.8365 1.1130 19 7 5.1883 -11.4358 0.5895 20 14 3.6014 -13.6498 1.0969 21 1 2.8527 -13.9635 -0.1466 22 1 4.8404 -14.4667 1.1482 23 1 2.7543 -13.9607 2.2764 24 6 2.9967 -7.4267 2.5017 25 1 -0.3634 0.4513 0.9233 26 1 -0.3633 0.5739 -0.8525 27 1 -0.3633 -1.0252 -0.0708 28 1 3.0827 1.3433 -0.0709 29 1 1.5899 1.9163 -0.8526 30 1 1.7044 1.8725 0.9232 31 1 1.5611 -0.3871 2.0628 32 1 3.0797 -0.6610 1.1758 33 1 2.0659 -2.6213 0.0453 34 1 0.5472 -2.3474 0.9324 35 1 2.6492 -2.5542 2.8077 36 1 2.0619 -4.7448 4.2637 37 1 3.5808 -5.0180 3.3768 38 1 0.2838 -6.3955 4.2194 39 1 -0.3052 -8.7703 3.9541 40 1 1.2104 -10.2893 2.7486 41 1 5.7946 -12.0819 0.1948 42 1 3.9232 -7.0488 2.0955 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090010734.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:17 Heat of formation + Delta-G solvation = -60.595922 kcal Electronic energy + Delta-G solvation = -22235.174628 eV Core-core repulsion = 18793.965120 eV Total energy + Delta-G solvation = -3441.209508 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.13175 -40.40154 -38.69312 -38.10955 -35.61474 -34.33915 -33.49094 -31.03746 -30.50587 -28.51340 -28.27079 -27.22769 -25.00953 -23.27245 -22.74277 -22.21957 -21.34784 -19.49709 -18.79586 -18.00151 -17.26014 -17.00723 -16.71817 -16.45950 -16.13316 -15.90474 -15.76871 -15.56452 -15.34765 -15.00131 -14.54831 -14.43895 -14.28197 -13.97375 -13.58933 -13.28372 -12.96736 -12.95489 -12.76386 -12.63774 -12.49862 -12.45306 -12.35153 -12.21283 -12.13431 -12.08989 -11.19847 -10.98431 -10.79253 -10.09463 -9.62773 -9.36262 -8.96921 -8.46601 -6.15169 0.52940 0.76820 1.34013 1.44025 1.52212 1.68669 2.12307 2.18332 2.84390 3.11540 3.23354 3.45593 3.80424 3.84362 4.01660 4.11824 4.18100 4.27863 4.33166 4.41316 4.45969 4.50237 4.59473 4.64493 4.66675 4.70239 4.75017 4.87543 4.93739 5.03764 5.05023 5.08814 5.13698 5.31921 5.42772 5.66112 5.73832 5.76410 6.00270 6.03276 6.03485 6.24837 6.59407 6.97867 7.32447 7.79841 8.77110 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.027041 B = 0.002571 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.232994 B =10886.457684 C =11390.651998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.566 5.566 3 C 0.026 3.974 4 C 0.055 3.945 5 C 0.124 3.876 6 N -0.716 5.716 7 C 0.513 3.487 8 O -0.581 6.581 9 C -0.089 4.089 10 C -0.027 4.027 11 C -0.180 4.180 12 C -0.075 4.075 13 C -0.247 4.247 14 C 0.111 3.889 15 O -0.235 6.235 16 C -0.414 4.414 17 H 0.100 0.900 18 C -0.025 4.025 19 N -0.923 5.923 20 Si 1.021 2.979 21 H -0.265 1.265 22 H -0.269 1.269 23 H -0.252 1.252 24 C -0.193 4.193 25 H 0.036 0.964 26 H 0.076 0.924 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.035 0.965 31 H 0.057 0.943 32 H 0.093 0.907 33 H 0.048 0.952 34 H 0.056 0.944 35 H 0.419 0.581 36 H 0.147 0.853 37 H 0.123 0.877 38 H 0.148 0.852 39 H 0.145 0.855 40 H 0.117 0.883 41 H 0.273 0.727 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.849 24.186 7.326 26.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.291 5.291 3 C -0.122 4.122 4 C -0.074 4.074 5 C -0.001 4.001 6 N -0.370 5.370 7 C 0.301 3.699 8 O -0.460 6.460 9 C -0.129 4.129 10 C -0.027 4.027 11 C -0.199 4.199 12 C -0.092 4.092 13 C -0.267 4.267 14 C 0.061 3.939 15 O -0.142 6.142 16 C -0.490 4.490 17 H 0.118 0.882 18 C -0.222 4.222 19 N -0.561 5.561 20 Si 0.840 3.160 21 H -0.190 1.190 22 H -0.193 1.193 23 H -0.176 1.176 24 C -0.213 4.213 25 H 0.054 0.946 26 H 0.095 0.905 27 H 0.080 0.920 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.111 0.889 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.257 0.743 36 H 0.164 0.836 37 H 0.141 0.859 38 H 0.166 0.834 39 H 0.163 0.837 40 H 0.135 0.865 41 H 0.082 0.918 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -7.745 23.557 6.041 25.522 hybrid contribution 0.034 -0.552 0.400 0.682 sum -7.711 23.005 6.441 25.103 Atomic orbital electron populations 1.22491 0.86743 1.02312 1.01392 1.61824 1.08859 1.15318 1.43111 1.22422 1.01161 0.87250 1.01329 1.22185 1.01604 0.91021 0.92567 1.21188 0.98605 0.91307 0.88951 1.45703 1.58120 1.06975 1.26245 1.20972 0.78976 0.82500 0.87479 1.90763 1.42603 1.70671 1.41920 1.20704 1.04592 0.89337 0.98236 1.19221 0.93754 0.94346 0.95415 1.20988 0.97528 0.95665 1.05698 1.21138 0.98467 0.93613 0.96027 1.21295 0.96584 1.01377 1.07402 1.19893 0.90667 0.91615 0.91757 1.83936 1.46503 1.18756 1.64990 1.21830 1.06341 0.79887 1.40970 0.88247 1.26629 0.94635 1.05456 0.95513 1.70190 1.10747 1.37095 1.38077 0.84567 0.78346 0.73428 0.79705 1.18954 1.19334 1.17556 1.20240 1.02495 0.91187 1.07343 0.94575 0.90488 0.92045 0.90726 0.90661 0.94637 0.92443 0.88897 0.93343 0.92591 0.74292 0.83572 0.85880 0.83413 0.83690 0.86486 0.91849 0.87570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.32 127.69 1.19 1.44 16 2 N -0.57 -8.24 5.02 -948.81 -4.76 -13.00 16 3 C 0.03 0.26 9.57 127.69 1.22 1.48 16 4 C 0.05 0.69 5.07 86.30 0.44 1.13 16 5 C 0.12 2.42 5.60 86.38 0.48 2.90 16 6 N -0.72 -12.88 5.56 -463.06 -2.57 -15.45 16 7 C 0.51 13.99 7.82 87.66 0.69 14.68 16 8 O -0.58 -23.15 16.03 -3.04 -0.05 -23.19 16 9 C -0.09 -2.06 5.83 29.10 0.17 -1.89 16 10 C -0.03 -0.95 4.37 -19.88 -0.09 -1.03 16 11 C -0.18 -6.01 9.70 22.30 0.22 -5.80 16 12 C -0.07 -2.77 10.04 22.25 0.22 -2.55 16 13 C -0.25 -11.64 9.17 22.39 0.21 -11.44 16 14 C 0.11 5.94 6.65 22.58 0.15 6.09 16 15 O -0.23 -14.99 9.76 -22.74 -0.22 -15.22 16 16 C -0.41 -25.35 9.49 67.92 0.64 -24.71 16 17 H 0.10 5.61 5.21 -2.91 -0.02 5.60 16 18 C -0.03 -1.50 5.49 84.83 0.47 -1.03 16 19 N -0.92 -58.68 13.67 21.61 0.30 -58.39 16 20 Si 1.02 44.54 29.55 68.60 2.03 46.57 16 21 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 22 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 23 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 24 C -0.19 -8.90 9.65 22.39 0.22 -8.69 16 25 H 0.04 0.40 8.14 -2.38 -0.02 0.38 16 26 H 0.08 0.89 8.12 -2.39 -0.02 0.87 16 27 H 0.06 0.97 6.47 -2.39 -0.02 0.95 16 28 H 0.07 0.67 8.12 -2.39 -0.02 0.66 16 29 H 0.07 0.68 8.12 -2.38 -0.02 0.66 16 30 H 0.04 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.06 0.56 8.12 -2.39 -0.02 0.54 16 32 H 0.09 0.99 8.06 -2.39 -0.02 0.97 16 33 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 34 H 0.06 1.23 6.55 -2.39 -0.02 1.22 16 35 H 0.42 3.92 8.47 -92.71 -0.79 3.14 16 36 H 0.15 2.02 8.09 -2.39 -0.02 2.00 16 37 H 0.12 2.33 8.08 -2.39 -0.02 2.31 16 38 H 0.15 3.66 8.06 -2.91 -0.02 3.64 16 39 H 0.15 4.23 8.06 -2.91 -0.02 4.21 16 40 H 0.12 5.56 5.64 -2.91 -0.02 5.54 16 41 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 42 H 0.11 4.88 8.06 -2.91 -0.02 4.85 16 Total: -1.00 -85.48 354.64 1.18 -84.30 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: 0.24 Total: 23.79 kcal Atomic # 6 Polarization: -35.63 SS G_CDS: 6.22 Total: -29.41 kcal Atomic # 7 Polarization: -79.80 SS G_CDS: -7.04 Total: -86.84 kcal Atomic # 8 Polarization: -38.14 SS G_CDS: -0.27 Total: -38.41 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -85.48 1.18 -84.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090010734.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.700 kcal (2) G-P(sol) polarization free energy of solvation -85.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds