Wall clock time and date at job start Tue Mar 31 2020 02:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46788 * 2 1 4 4 H 1.09004 * 109.46925 * 54.57785 * 3 2 1 5 5 C 1.50704 * 109.47018 * 174.57383 * 3 2 1 6 6 H 1.08005 * 119.99737 * 114.40132 * 5 3 2 7 7 C 1.37871 * 120.00143 * 294.40189 * 5 3 2 8 8 N 1.31516 * 120.00287 * 158.43455 * 7 5 3 9 9 Si 1.86810 * 120.00132 * 338.43635 * 7 5 3 10 10 H 1.48496 * 109.47002 * 270.00051 * 9 7 5 11 11 H 1.48497 * 109.46697 * 30.00030 * 9 7 5 12 12 H 1.48496 * 109.46933 * 150.00169 * 9 7 5 13 13 N 1.46495 * 109.47659 * 294.57468 * 3 2 1 14 14 C 1.34784 * 119.99865 * 84.99901 * 13 3 2 15 15 O 1.21584 * 119.99978 * 0.02562 * 14 13 3 16 16 N 1.34780 * 119.99950 * 180.02562 * 14 13 3 17 17 C 1.39932 * 119.99960 * 185.25227 * 16 14 13 18 18 C 1.38790 * 120.04452 * 328.28020 * 17 16 14 19 19 C 1.38587 * 119.88019 * 179.97438 * 18 17 16 20 20 O 1.35895 * 120.01888 * 180.02562 * 19 18 17 21 21 C 1.42900 * 116.99714 * 179.97438 * 20 19 18 22 22 C 1.38810 * 119.95420 * 359.97438 * 19 18 17 23 23 C 1.38164 * 120.08464 * 0.02562 * 22 19 18 24 24 C 1.38161 * 120.12607 * 359.74280 * 23 22 19 25 25 C 1.50701 * 119.98223 * 180.25566 * 24 23 22 26 26 H 1.08997 * 109.47002 * 299.99808 * 1 2 3 27 27 H 1.08994 * 109.47090 * 59.99854 * 1 2 3 28 28 H 1.08998 * 109.46698 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47032 * 240.00708 * 2 1 3 30 30 H 1.08999 * 109.47533 * 120.00062 * 2 1 3 31 31 H 0.96998 * 119.99509 * 354.94246 * 8 7 5 32 32 H 0.96997 * 120.00404 * 265.00239 * 13 3 2 33 33 H 0.96998 * 119.99352 * 5.25530 * 16 14 13 34 34 H 1.08002 * 120.06134 * 359.94983 * 18 17 16 35 35 H 1.08996 * 109.47342 * 179.97438 * 21 20 19 36 36 H 1.09003 * 109.47054 * 299.99824 * 21 20 19 37 37 H 1.09001 * 109.47189 * 59.99743 * 21 20 19 38 38 H 1.08005 * 119.95376 * 180.02562 * 22 19 18 39 39 H 1.08001 * 119.93625 * 179.97438 * 23 22 19 40 40 H 1.09000 * 109.46863 * 270.25409 * 25 24 23 41 41 H 1.08994 * 109.47173 * 30.25107 * 25 24 23 42 42 H 1.09002 * 109.47592 * 150.25763 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5994 1.9836 0.8375 5 6 3.5410 1.4447 0.1344 6 1 4.1553 1.8049 -0.6777 7 6 4.1300 0.9870 1.2938 8 7 5.3828 0.5869 1.2815 9 14 3.1486 0.9348 2.8825 10 1 3.3071 2.2226 3.6047 11 1 1.7134 0.7155 2.5707 12 1 3.6453 -0.1751 3.7349 13 7 1.6612 2.0945 -1.2560 14 6 0.4446 2.6611 -1.3811 15 8 -0.3382 2.6315 -0.4513 16 7 0.0960 3.2605 -2.5368 17 6 -1.1216 3.9436 -2.6311 18 6 -2.2178 3.5146 -1.8959 19 6 -3.4220 4.1941 -1.9915 20 8 -4.4970 3.7768 -1.2725 21 6 -5.7057 4.5248 -1.4195 22 6 -3.5288 5.3017 -2.8213 23 6 -2.4364 5.7273 -3.5524 24 6 -1.2331 5.0553 -3.4561 25 6 -0.0421 5.5258 -4.2506 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5137 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 5.8700 0.5445 0.4438 32 1 2.2858 2.1184 -1.9977 33 1 0.6891 3.2182 -3.3031 34 1 -2.1328 2.6526 -1.2508 35 1 -6.4826 4.0866 -0.7932 36 1 -5.5331 5.5574 -1.1159 37 1 -6.0233 4.5008 -2.4619 38 1 -4.4671 5.8314 -2.8955 39 1 -2.5224 6.5891 -4.1976 40 1 -0.0359 5.0324 -5.2225 41 1 -0.1026 6.6049 -4.3914 42 1 0.8736 5.2803 -3.7127 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097141434.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:17 Heat of formation + Delta-G solvation = -44.286269 kcal Electronic energy + Delta-G solvation = -23708.917435 eV Core-core repulsion = 20268.415167 eV Total energy + Delta-G solvation = -3440.502268 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.64402 -39.46932 -37.75482 -35.51067 -34.14363 -32.48945 -32.01369 -31.44325 -29.61285 -27.78727 -26.94856 -25.93292 -23.19786 -22.28358 -21.34445 -20.63740 -19.69140 -18.59917 -18.29296 -17.11893 -16.10757 -16.08037 -15.74095 -15.40662 -15.07050 -14.60116 -14.09409 -13.91110 -13.58849 -13.50601 -13.27254 -12.66267 -12.59383 -12.52724 -12.30183 -12.26214 -12.00208 -11.75854 -11.60404 -11.12675 -10.98311 -10.78965 -10.71212 -10.46074 -10.06476 -9.84058 -9.69805 -9.38446 -9.12363 -8.31794 -8.30494 -8.07333 -7.76420 -6.60283 -4.21900 1.38826 1.48808 2.96769 3.37039 3.42547 3.47296 3.56203 3.62740 3.94798 4.44365 4.74229 4.80448 4.93868 4.99079 5.02653 5.06755 5.12379 5.25752 5.32804 5.38031 5.53890 5.78160 5.87183 5.96024 6.10507 6.12887 6.27863 6.30426 6.34083 6.50156 6.54582 6.70250 6.82098 6.95446 7.02528 7.07076 7.19927 7.41887 7.47422 7.51525 7.78714 8.24164 8.60547 8.73015 9.11051 9.44886 10.78687 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.021058 B = 0.004141 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.336441 B = 6759.488727 C = 7576.445792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 C 0.264 3.736 4 H 0.045 0.955 5 C -0.623 4.623 6 H 0.062 0.938 7 C 0.046 3.954 8 N -0.892 5.892 9 Si 1.033 2.967 10 H -0.283 1.283 11 H -0.267 1.267 12 H -0.284 1.284 13 N -0.712 5.712 14 C 0.692 3.308 15 O -0.572 6.572 16 N -0.691 5.691 17 C 0.218 3.782 18 C -0.156 4.156 19 C 0.138 3.862 20 O -0.315 6.315 21 C 0.029 3.971 22 C -0.232 4.232 23 C -0.064 4.064 24 C -0.160 4.160 25 C -0.107 4.107 26 H 0.053 0.947 27 H 0.048 0.952 28 H 0.029 0.971 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.271 0.729 32 H 0.389 0.611 33 H 0.404 0.596 34 H 0.158 0.842 35 H 0.097 0.903 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.124 0.876 39 H 0.124 0.876 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.592 8.595 -11.589 21.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.168 4.168 3 C 0.161 3.839 4 H 0.063 0.937 5 C -0.661 4.661 6 H 0.080 0.920 7 C -0.162 4.162 8 N -0.524 5.524 9 Si 0.859 3.141 10 H -0.210 1.210 11 H -0.192 1.192 12 H -0.210 1.210 13 N -0.363 5.363 14 C 0.392 3.608 15 O -0.450 6.450 16 N -0.338 5.338 17 C 0.120 3.880 18 C -0.178 4.178 19 C 0.093 3.907 20 O -0.228 6.228 21 C -0.066 4.066 22 C -0.252 4.252 23 C -0.083 4.083 24 C -0.164 4.164 25 C -0.164 4.164 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.048 0.952 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.222 0.778 33 H 0.240 0.760 34 H 0.175 0.825 35 H 0.115 0.885 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.059 7.983 -8.900 20.831 hybrid contribution 0.416 0.625 -2.532 2.641 sum -16.643 8.608 -11.432 21.949 Atomic orbital electron populations 1.21879 0.97275 0.98782 1.02091 1.22219 0.93846 0.99730 1.01050 1.19054 0.95537 0.88241 0.81099 0.93710 1.22031 0.89659 1.49410 1.04998 0.92011 1.25627 0.96758 0.91886 1.01882 1.70840 1.11143 1.39623 1.30824 0.84196 0.76527 0.77416 0.75930 1.20964 1.19236 1.20969 1.45587 1.13087 1.58618 1.18966 1.16147 0.83627 0.78799 0.82188 1.90877 1.51098 1.63959 1.39056 1.42817 1.20025 1.56457 1.14521 1.16994 0.84451 0.90636 0.95880 1.20681 0.88696 1.03874 1.04513 1.18807 0.87302 0.93213 0.91410 1.86103 1.18671 1.54275 1.63734 1.23011 0.85093 0.96549 1.01949 1.21088 1.00476 1.00191 1.03396 1.20483 0.91287 0.98622 0.97865 1.19529 0.96811 0.96199 1.03832 1.20630 0.95537 1.01396 0.98846 0.92830 0.93318 0.95203 0.93230 0.92145 0.91945 0.77800 0.76023 0.82467 0.88481 0.92800 0.92877 0.85853 0.85807 0.91657 0.91506 0.91758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.52 37.16 0.32 -2.62 16 2 C -0.13 -2.89 5.06 -26.73 -0.14 -3.02 16 3 C 0.26 6.26 1.79 -69.08 -0.12 6.13 16 4 H 0.05 1.17 5.97 -51.93 -0.31 0.86 16 5 C -0.62 -16.62 8.96 -34.44 -0.31 -16.92 16 6 H 0.06 1.72 7.96 -52.48 -0.42 1.30 16 7 C 0.05 1.28 5.24 -17.82 -0.09 1.19 16 8 N -0.89 -26.29 13.70 55.43 0.76 -25.53 16 9 Si 1.03 25.00 26.36 -169.99 -4.48 20.52 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.27 -6.19 5.93 56.52 0.34 -5.86 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 N -0.71 -14.12 5.03 -59.81 -0.30 -14.43 16 14 C 0.69 13.29 7.02 -86.91 -0.61 12.68 16 15 O -0.57 -12.76 10.69 5.29 0.06 -12.70 16 16 N -0.69 -10.43 4.82 -14.24 -0.07 -10.49 16 17 C 0.22 3.31 6.34 -83.72 -0.53 2.78 16 18 C -0.16 -2.63 8.67 -39.25 -0.34 -2.97 16 19 C 0.14 2.03 6.68 -39.24 -0.26 1.77 16 20 O -0.31 -4.41 10.49 -19.41 -0.20 -4.61 16 21 C 0.03 0.26 9.81 101.05 0.99 1.25 16 22 C -0.23 -2.77 9.04 -39.40 -0.36 -3.12 16 23 C -0.06 -0.72 9.69 -39.64 -0.38 -1.10 16 24 C -0.16 -2.00 5.90 -104.41 -0.62 -2.62 16 25 C -0.11 -1.03 9.46 36.01 0.34 -0.69 16 26 H 0.05 1.16 7.87 -51.93 -0.41 0.75 16 27 H 0.05 0.99 5.63 -51.93 -0.29 0.70 16 28 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.06 1.40 5.70 -51.93 -0.30 1.10 16 31 H 0.27 7.86 8.73 -40.82 -0.36 7.51 16 32 H 0.39 6.79 8.54 -40.82 -0.35 6.44 16 33 H 0.40 4.78 7.73 -40.82 -0.32 4.46 16 34 H 0.16 3.05 5.94 -52.49 -0.31 2.74 16 35 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 37 H 0.05 0.38 7.66 -51.93 -0.40 -0.01 16 38 H 0.12 1.14 6.29 -52.48 -0.33 0.81 16 39 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 42 H 0.06 0.65 7.11 -51.93 -0.37 0.28 16 LS Contribution 334.91 15.07 5.05 5.05 Total: -1.00 -32.01 334.91 -7.25 -39.26 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -5.95 Total: 10.21 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: -2.11 Total: -7.27 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: 0.39 Total: -50.45 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -0.15 Total: -17.32 kcal Atomic # 14 Polarization: 25.00 SS G_CDS: -4.48 Total: 20.52 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.01 -7.25 -39.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097141434.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.028 kcal (2) G-P(sol) polarization free energy of solvation -32.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds