Wall clock time and date at job start Tue Mar 31 2020 03:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38045 * 126.29028 * 2 1 4 4 C 1.47432 * 126.41546 * 359.97438 * 3 2 1 5 5 O 1.21602 * 119.99794 * 359.97438 * 4 3 2 6 6 N 1.34768 * 119.99977 * 180.02562 * 4 3 2 7 7 C 1.46499 * 120.00306 * 179.97438 * 6 4 3 8 8 C 1.53045 * 109.46217 * 154.99730 * 7 6 4 9 9 C 1.53189 * 109.30964 * 181.38826 * 8 7 6 10 10 N 1.46932 * 108.89486 * 305.29189 * 9 8 7 11 11 C 1.36934 * 120.62713 * 233.67791 * 10 9 8 12 12 H 1.07999 * 120.00365 * 27.39524 * 11 10 9 13 13 C 1.38820 * 119.99352 * 207.39446 * 11 10 9 14 14 N 1.31613 * 120.00097 * 17.26040 * 13 11 10 15 15 Si 1.86807 * 119.99669 * 197.26046 * 13 11 10 16 16 H 1.48505 * 109.47107 * 90.00031 * 15 13 11 17 17 H 1.48498 * 109.47190 * 209.99825 * 15 13 11 18 18 H 1.48496 * 109.47303 * 330.00267 * 15 13 11 19 19 C 1.47199 * 118.55133 * 53.54206 * 10 9 8 20 20 C 1.53044 * 109.46115 * 275.06667 * 7 6 4 21 21 C 1.41292 * 107.17010 * 180.25026 * 3 2 1 22 22 N 1.30446 * 108.02012 * 359.61364 * 21 3 2 23 23 N 1.34251 * 126.28869 * 180.02562 * 2 1 3 24 24 C 1.46500 * 125.75962 * 359.95709 * 23 2 1 25 25 H 1.09010 * 109.47363 * 89.99882 * 1 2 3 26 26 H 1.08994 * 109.47459 * 209.99757 * 1 2 3 27 27 H 1.08999 * 109.47171 * 329.99891 * 1 2 3 28 28 H 0.97000 * 120.00381 * 359.97438 * 6 4 3 29 29 H 1.09005 * 109.44613 * 35.02958 * 7 6 4 30 30 H 1.08994 * 109.49759 * 61.43796 * 8 7 6 31 31 H 1.09000 * 109.49498 * 301.33617 * 8 7 6 32 32 H 1.09005 * 109.59042 * 65.15548 * 9 8 7 33 33 H 1.09001 * 109.58782 * 185.43429 * 9 8 7 34 34 H 0.97008 * 119.99917 * 179.97438 * 14 13 11 35 35 H 1.09001 * 109.53355 * 186.67380 * 19 10 9 36 36 H 1.09002 * 109.67913 * 66.37168 * 19 10 9 37 37 H 1.08997 * 109.49664 * 298.56304 * 20 7 6 38 38 H 1.09005 * 109.49458 * 58.65790 * 20 7 6 39 39 H 1.07994 * 125.99092 * 179.74465 * 21 3 2 40 40 H 1.08992 * 109.47446 * 90.00046 * 24 23 2 41 41 H 1.09002 * 109.47082 * 210.00329 * 24 23 2 42 42 H 1.09001 * 109.46484 * 330.00109 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5203 -0.0005 5 8 0.6995 2.7878 -0.0015 6 7 2.7998 3.5107 -0.0010 7 6 2.3644 4.9095 -0.0021 8 6 3.4613 5.7855 0.6075 9 6 2.9886 7.2423 0.6364 10 7 2.5874 7.6394 -0.7201 11 6 3.1206 8.7560 -1.3066 12 1 4.1045 9.0981 -1.0215 13 6 2.3964 9.4481 -2.2677 14 7 1.0989 9.2571 -2.3780 15 14 3.2636 10.6504 -3.4043 16 1 3.7234 9.9363 -4.6225 17 1 2.3231 11.7328 -3.7904 18 1 4.4337 11.2379 -2.7037 19 6 1.6033 6.8094 -1.4340 20 6 2.0915 5.3574 -1.4398 21 6 3.6590 0.6499 -0.0059 22 7 3.6340 -0.6543 -0.0008 23 7 2.3016 -1.0821 -0.0005 24 6 1.8500 -2.4758 -0.0002 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 3.7461 3.2974 -0.0006 29 1 1.4527 5.0062 0.5876 30 1 4.3657 5.7084 0.0041 31 1 3.6715 5.4509 1.6234 32 1 2.1381 7.3372 1.3116 33 1 3.8007 7.8833 0.9796 34 1 0.5928 9.7410 -3.0494 35 1 1.5022 7.1650 -2.4594 36 1 0.6387 6.8686 -0.9300 37 1 3.0089 5.2843 -2.0239 38 1 1.3268 4.7182 -1.8811 39 1 4.5448 1.2676 -0.0113 40 1 1.7374 -2.8215 -1.0277 41 1 2.5850 -3.0958 0.5132 42 1 0.8917 -2.5470 0.5142 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110823785.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:40 Heat of formation + Delta-G solvation = 31.734504 kcal Electronic energy + Delta-G solvation = -23401.996188 eV Core-core repulsion = 19997.083179 eV Total energy + Delta-G solvation = -3404.913009 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.46049 -40.51956 -38.76091 -35.96348 -34.70296 -33.77211 -32.91157 -31.74035 -31.20940 -28.54564 -27.73078 -26.72883 -24.19577 -23.85360 -23.00133 -21.34865 -21.20945 -20.41014 -18.87007 -18.36913 -17.15687 -16.83967 -16.64082 -16.56187 -15.72793 -15.57181 -15.38764 -15.31514 -14.89782 -14.59975 -14.29074 -14.17589 -13.98348 -13.91195 -13.49838 -13.38257 -13.15623 -13.01632 -12.98513 -12.59867 -12.58388 -12.09518 -12.00457 -11.89849 -11.81162 -11.49461 -11.32988 -10.78021 -10.56429 -10.39470 -10.01269 -9.54777 -8.70010 -7.85397 -5.30870 0.50452 1.16076 1.41447 1.48823 1.50443 1.59273 2.35877 2.50843 2.53257 3.30175 3.52012 3.61148 3.69009 3.90710 4.00792 4.09935 4.13888 4.33568 4.38641 4.41043 4.51273 4.53603 4.63627 4.68504 4.70507 4.83596 4.89918 4.97479 5.07326 5.12359 5.16557 5.17975 5.35359 5.41405 5.50337 5.64702 5.66768 5.72877 5.89850 6.40218 6.50291 6.75228 7.15010 7.41199 7.86255 8.39507 9.21789 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.033849 B = 0.003103 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.014255 B = 9022.051483 C = 9193.496125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.153 3.847 3 C -0.323 4.323 4 C 0.590 3.410 5 O -0.587 6.587 6 N -0.708 5.708 7 C 0.166 3.834 8 C -0.122 4.122 9 C 0.141 3.859 10 N -0.610 5.610 11 C -0.260 4.260 12 H 0.074 0.926 13 C -0.055 4.055 14 N -0.938 5.938 15 Si 0.969 3.031 16 H -0.286 1.286 17 H -0.298 1.298 18 H -0.265 1.265 19 C 0.182 3.818 20 C -0.129 4.129 21 C 0.088 3.912 22 N -0.323 5.323 23 N -0.363 5.363 24 C 0.084 3.916 25 H 0.092 0.908 26 H 0.104 0.896 27 H 0.083 0.917 28 H 0.411 0.589 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.012 0.988 33 H 0.067 0.933 34 H 0.249 0.751 35 H 0.054 0.946 36 H -0.010 1.010 37 H 0.059 0.941 38 H 0.045 0.955 39 H 0.216 0.784 40 H 0.093 0.907 41 H 0.101 0.899 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.912 -24.019 6.300 25.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.019 3.981 3 C -0.338 4.338 4 C 0.379 3.621 5 O -0.469 6.469 6 N -0.358 5.358 7 C 0.061 3.939 8 C -0.161 4.161 9 C 0.015 3.985 10 N -0.334 5.334 11 C -0.390 4.390 12 H 0.092 0.908 13 C -0.250 4.250 14 N -0.585 5.585 15 Si 0.797 3.203 16 H -0.213 1.213 17 H -0.225 1.225 18 H -0.189 1.189 19 C 0.056 3.944 20 C -0.170 4.170 21 C -0.099 4.099 22 N -0.142 5.142 23 N -0.142 5.142 24 C -0.055 4.055 25 H 0.110 0.890 26 H 0.122 0.878 27 H 0.102 0.898 28 H 0.247 0.753 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.109 0.891 32 H 0.030 0.970 33 H 0.085 0.915 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.008 0.992 37 H 0.078 0.922 38 H 0.064 0.936 39 H 0.232 0.768 40 H 0.111 0.889 41 H 0.120 0.880 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.681 -24.988 6.229 26.015 hybrid contribution -0.116 1.632 -0.850 1.843 sum 3.565 -23.357 5.379 24.232 Atomic orbital electron populations 1.20708 0.84766 1.05275 1.04654 1.21855 0.95872 0.86425 0.93908 1.20043 0.94154 0.92822 1.26740 1.17544 0.85151 0.84569 0.74786 1.90717 1.18174 1.84918 1.53079 1.45761 1.10048 1.05091 1.74949 1.20630 0.97917 0.79741 0.95636 1.22140 0.97520 0.94974 1.01512 1.21039 0.97405 0.94137 0.85871 1.44415 1.49427 1.26863 1.12672 1.19583 0.97911 1.02883 1.18600 0.90827 1.25857 0.95450 1.00360 1.03378 1.70210 1.06367 1.45785 1.36110 0.85237 0.77783 0.78094 0.79164 1.21326 1.22461 1.18912 1.20513 0.89349 0.87541 0.97005 1.22297 1.00432 0.97140 0.97097 1.24424 0.97510 0.91989 0.95982 1.77122 0.97198 1.13611 1.26308 1.48700 1.03423 1.07582 1.54495 1.22378 1.02734 0.75099 1.05306 0.89003 0.87770 0.89791 0.75270 0.92319 0.90644 0.89056 0.97003 0.91458 0.94215 0.92725 0.99161 0.92223 0.93624 0.76781 0.88896 0.87989 0.86631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.67 9.57 71.24 0.68 -0.99 16 2 C 0.15 3.33 7.01 42.14 0.30 3.63 16 3 C -0.32 -8.15 6.13 -20.15 -0.12 -8.27 16 4 C 0.59 18.24 7.78 86.67 0.67 18.91 16 5 O -0.59 -22.49 14.50 -4.04 -0.06 -22.55 16 6 N -0.71 -19.65 5.07 -445.67 -2.26 -21.91 16 7 C 0.17 5.73 2.42 45.02 0.11 5.84 16 8 C -0.12 -3.80 5.55 30.67 0.17 -3.63 16 9 C 0.14 5.73 6.50 86.36 0.56 6.30 16 10 N -0.61 -31.04 3.01 -698.38 -2.10 -33.14 16 11 C -0.26 -14.31 9.59 84.04 0.81 -13.51 16 12 H 0.07 3.87 7.89 -2.91 -0.02 3.85 16 13 C -0.06 -3.14 4.92 84.86 0.42 -2.73 16 14 N -0.94 -57.18 11.18 21.65 0.24 -56.94 16 15 Si 0.97 45.33 29.59 68.60 2.03 47.36 16 16 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 17 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 18 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 19 C 0.18 9.33 5.33 86.31 0.46 9.79 16 20 C -0.13 -5.32 5.65 30.67 0.17 -5.14 16 21 C 0.09 1.84 11.50 85.65 0.99 2.82 16 22 N -0.32 -7.12 12.50 -56.28 -0.70 -7.82 16 23 N -0.36 -6.71 3.98 -354.32 -1.41 -8.12 16 24 C 0.08 0.68 11.24 127.77 1.44 2.11 16 25 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 26 H 0.10 0.99 7.05 -2.39 -0.02 0.98 16 27 H 0.08 1.95 6.50 -2.39 -0.02 1.94 16 28 H 0.41 8.43 7.56 -92.71 -0.70 7.73 16 29 H 0.06 2.34 7.58 -2.38 -0.02 2.33 16 30 H 0.07 2.22 8.14 -2.39 -0.02 2.21 16 31 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 33 H 0.07 2.58 7.93 -2.39 -0.02 2.56 16 34 H 0.25 14.70 8.31 -92.70 -0.77 13.93 16 35 H 0.05 3.15 6.04 -2.39 -0.01 3.14 16 36 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 37 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.05 1.92 8.14 -2.38 -0.02 1.91 16 39 H 0.22 2.91 7.50 -2.91 -0.02 2.89 16 40 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.12 0.34 7.02 -2.39 -0.02 0.32 16 Total: -1.00 -76.60 340.98 2.72 -73.89 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 0.33 Total: 14.11 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: 6.65 Total: 15.13 kcal Atomic # 7 Polarization: -121.71 SS G_CDS: -6.23 Total: -127.94 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.06 Total: -22.55 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -76.60 2.72 -73.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110823785.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.620 kcal (2) G-P(sol) polarization free energy of solvation -76.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds