Wall clock time and date at job start Tue Mar 31 2020 03:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46894 * 111.00016 * 2 1 4 4 C 1.46899 * 110.99872 * 123.96087 * 2 1 3 5 5 C 1.53004 * 109.47001 * 170.00210 * 4 2 1 6 6 N 1.46495 * 109.47156 * 179.97438 * 5 4 2 7 7 C 1.34775 * 120.00172 * 179.97438 * 6 5 4 8 8 O 1.21287 * 119.99798 * 0.02562 * 7 6 5 9 9 C 1.50705 * 120.00246 * 179.97438 * 7 6 5 10 10 C 1.50695 * 109.46992 * 180.02562 * 9 7 6 11 11 C 1.38299 * 119.93247 * 90.00201 * 10 9 7 12 12 C 1.38101 * 120.07425 * 179.97438 * 11 10 9 13 13 C 1.38886 * 119.92536 * 0.02562 * 12 11 10 14 14 O 1.35750 * 120.06440 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00075 * 5.53777 * 14 13 12 16 16 H 1.07993 * 120.00518 * 354.94289 * 15 14 13 17 17 C 1.38663 * 119.99751 * 174.94575 * 15 14 13 18 18 N 1.31556 * 120.00220 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99821 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47264 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47375 * 119.99795 * 19 17 15 22 22 H 1.48506 * 109.47301 * 239.99793 * 19 17 15 23 23 C 1.38874 * 119.86623 * 0.27854 * 13 12 11 24 24 C 1.38106 * 119.92542 * 359.44577 * 23 13 12 25 25 H 1.09009 * 109.46804 * 296.04255 * 1 2 3 26 26 H 1.08996 * 109.47160 * 56.04428 * 1 2 3 27 27 H 1.09000 * 109.47143 * 176.04760 * 1 2 3 28 28 H 1.09005 * 109.47170 * 183.95410 * 3 2 1 29 29 H 1.08998 * 109.47184 * 303.95790 * 3 2 1 30 30 H 1.08998 * 109.47218 * 63.95969 * 3 2 1 31 31 H 1.08998 * 109.47709 * 49.99252 * 4 2 1 32 32 H 1.09005 * 109.46659 * 289.99376 * 4 2 1 33 33 H 1.08998 * 109.47672 * 59.99019 * 5 4 2 34 34 H 1.09005 * 109.46733 * 299.99121 * 5 4 2 35 35 H 0.97005 * 120.00223 * 359.97438 * 6 5 4 36 36 H 1.08998 * 109.46621 * 60.00483 * 9 7 6 37 37 H 1.08996 * 109.47266 * 300.00146 * 9 7 6 38 38 H 1.07999 * 119.96503 * 0.02562 * 11 10 9 39 39 H 1.07992 * 120.03608 * 180.02562 * 12 11 10 40 40 H 0.96996 * 120.00178 * 179.97438 * 18 17 15 41 41 H 1.07996 * 120.03745 * 179.72497 * 23 13 12 42 42 H 1.07997 * 119.96326 * 180.27708 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7661 1.1375 5 6 3.5045 -0.9554 0.9702 6 7 4.0296 -1.7189 2.1049 7 6 5.3441 -2.0087 2.1717 8 8 6.0924 -1.6369 1.2925 9 6 5.8844 -2.7936 3.3392 10 6 7.3707 -2.9801 3.1744 11 6 8.2456 -2.0444 3.6955 12 6 9.6082 -2.2127 3.5466 13 6 10.0996 -3.3229 2.8721 14 8 11.4385 -3.4914 2.7246 15 6 12.2396 -2.6079 3.3535 16 1 11.8101 -1.7647 3.8738 17 6 13.6151 -2.7820 3.3321 18 7 14.1384 -3.8094 2.6987 19 14 14.7250 -1.5584 4.2040 20 1 13.8958 -0.5013 4.8367 21 1 15.5129 -2.2613 5.2481 22 1 15.6488 -0.9392 3.2198 23 6 9.2183 -4.2575 2.3445 24 6 7.8570 -4.0864 2.5017 25 1 -0.3633 0.4512 0.9234 26 1 -0.3633 0.5740 -0.8524 27 1 -0.3633 -1.0252 -0.0708 28 1 3.0828 1.3432 -0.0709 29 1 1.5898 1.9163 -0.8524 30 1 1.7045 1.8723 0.9233 31 1 1.5089 -1.7407 1.1756 32 1 1.7975 -0.2249 2.0627 33 1 3.9910 0.0192 0.9322 34 1 3.7024 -1.4967 0.0450 35 1 3.4312 -2.0159 2.8082 36 1 5.3977 -3.7681 3.3782 37 1 5.6870 -2.2516 4.2640 38 1 7.8629 -1.1815 4.2202 39 1 10.2908 -1.4819 3.9541 40 1 15.1006 -3.9310 2.6834 41 1 9.5973 -5.1195 1.8156 42 1 7.1712 -4.8152 2.0955 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111660389.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:21 Heat of formation + Delta-G solvation = -60.844131 kcal Electronic energy + Delta-G solvation = -22112.378991 eV Core-core repulsion = 18671.158720 eV Total energy + Delta-G solvation = -3441.220271 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.08295 -40.39238 -38.69180 -38.10866 -35.56884 -34.39288 -32.92610 -31.76905 -30.49280 -28.51038 -28.09889 -26.98186 -24.90297 -23.62656 -22.53691 -22.19871 -21.16544 -19.83728 -18.85456 -17.93958 -17.37267 -16.93663 -16.46730 -16.38539 -16.09340 -15.81826 -15.66138 -15.53175 -15.30307 -14.99315 -14.62518 -14.40335 -14.37856 -14.06453 -13.59507 -13.28479 -12.97983 -12.93940 -12.74649 -12.63320 -12.50681 -12.43692 -12.26006 -12.23740 -12.10829 -12.08678 -11.17048 -10.94027 -10.74687 -10.05295 -9.75216 -9.36520 -8.89085 -8.47214 -6.15304 0.62567 0.68216 1.33955 1.42690 1.52926 1.75417 2.16870 2.17787 2.83980 3.12094 3.24363 3.52676 3.83845 3.89017 4.03213 4.07494 4.19163 4.25576 4.29546 4.42110 4.50434 4.51518 4.61000 4.64629 4.71038 4.74060 4.81826 4.89063 4.95421 5.04308 5.05429 5.10784 5.15633 5.31823 5.47220 5.57760 5.72519 5.79239 6.00375 6.03439 6.03474 6.24544 6.65508 6.97299 7.39005 7.79134 8.76551 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.032274 B = 0.002401 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.364617 B =11659.108146 C =12050.496708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.565 5.565 3 C 0.018 3.982 4 C 0.054 3.946 5 C 0.124 3.876 6 N -0.717 5.717 7 C 0.510 3.490 8 O -0.583 6.583 9 C -0.076 4.076 10 C -0.146 4.146 11 C -0.061 4.061 12 C -0.245 4.245 13 C 0.111 3.889 14 O -0.234 6.234 15 C -0.413 4.413 16 H 0.100 0.900 17 C -0.026 4.026 18 N -0.922 5.922 19 Si 1.021 2.979 20 H -0.252 1.252 21 H -0.266 1.266 22 H -0.269 1.269 23 C -0.207 4.207 24 C -0.058 4.058 25 H 0.033 0.967 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.034 0.966 31 H 0.096 0.904 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.419 0.581 36 H 0.133 0.867 37 H 0.130 0.870 38 H 0.139 0.861 39 H 0.117 0.883 40 H 0.273 0.727 41 H 0.112 0.888 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.708 7.033 2.509 30.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.289 5.289 3 C -0.130 4.130 4 C -0.074 4.074 5 C 0.000 4.000 6 N -0.372 5.372 7 C 0.297 3.703 8 O -0.462 6.462 9 C -0.115 4.115 10 C -0.147 4.147 11 C -0.079 4.079 12 C -0.264 4.264 13 C 0.061 3.939 14 O -0.141 6.141 15 C -0.489 4.489 16 H 0.118 0.882 17 C -0.223 4.223 18 N -0.560 5.560 19 Si 0.840 3.160 20 H -0.175 1.175 21 H -0.191 1.191 22 H -0.194 1.194 23 C -0.227 4.227 24 C -0.076 4.076 25 H 0.052 0.948 26 H 0.093 0.907 27 H 0.095 0.905 28 H 0.079 0.921 29 H 0.095 0.905 30 H 0.052 0.948 31 H 0.114 0.886 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.256 0.744 36 H 0.151 0.849 37 H 0.148 0.852 38 H 0.156 0.844 39 H 0.135 0.865 40 H 0.082 0.918 41 H 0.130 0.870 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -28.733 6.828 1.275 29.560 hybrid contribution 0.675 0.668 0.886 1.298 sum -28.058 7.496 2.161 29.122 Atomic orbital electron populations 1.22427 0.85396 1.03120 1.01245 1.61830 1.09466 1.14525 1.43111 1.22485 1.00690 0.88500 1.01305 1.22197 0.92878 0.99939 0.92399 1.21166 0.94126 0.95553 0.89200 1.45747 1.08326 1.57023 1.26109 1.21233 0.81890 0.79415 0.87740 1.90763 1.58815 1.54416 1.42171 1.20529 0.90755 1.03076 0.97163 1.19287 0.95243 0.96342 1.03842 1.20943 0.91361 0.98102 0.97478 1.21230 0.97216 0.99957 1.07997 1.19950 0.84583 0.94765 0.94602 1.83937 1.12737 1.52077 1.65369 1.21864 0.88165 1.05969 1.32942 0.88247 1.26638 0.97638 0.99959 0.98057 1.70196 1.12927 1.30447 1.42443 0.84498 0.77156 0.76707 0.77610 1.17532 1.19051 1.19384 1.20450 0.93538 1.00512 1.08161 1.20894 0.92944 0.97729 0.96024 0.94803 0.90731 0.90486 0.92105 0.90499 0.94776 0.88568 0.92811 0.93181 0.92924 0.74352 0.84896 0.85180 0.84363 0.86536 0.91839 0.87021 0.83502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.57 127.69 1.22 1.45 16 2 N -0.56 -7.47 5.02 -948.84 -4.76 -12.23 16 3 C 0.02 0.23 9.32 127.69 1.19 1.42 16 4 C 0.05 0.60 5.07 86.30 0.44 1.04 16 5 C 0.12 2.19 5.60 86.38 0.48 2.67 16 6 N -0.72 -11.17 5.56 -463.05 -2.57 -13.75 16 7 C 0.51 12.40 7.82 87.66 0.69 13.08 16 8 O -0.58 -21.67 16.03 -3.05 -0.05 -21.72 16 9 C -0.08 -1.49 5.83 29.10 0.17 -1.32 16 10 C -0.15 -4.72 4.38 -19.84 -0.09 -4.81 16 11 C -0.06 -2.24 9.69 22.25 0.22 -2.03 16 12 C -0.24 -11.46 9.17 22.39 0.21 -11.26 16 13 C 0.11 5.93 6.65 22.58 0.15 6.08 16 14 O -0.23 -14.88 9.76 -22.72 -0.22 -15.10 16 15 C -0.41 -25.19 9.49 67.92 0.64 -24.54 16 16 H 0.10 5.60 5.20 -2.91 -0.02 5.59 16 17 C -0.03 -1.53 5.49 84.84 0.47 -1.06 16 18 N -0.92 -58.41 13.67 21.62 0.30 -58.11 16 19 Si 1.02 44.41 29.55 68.60 2.03 46.44 16 20 H -0.25 -10.15 7.11 99.48 0.71 -9.44 16 21 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 22 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 23 C -0.21 -9.53 9.99 22.39 0.22 -9.30 16 24 C -0.06 -2.08 9.69 22.25 0.22 -1.87 16 25 H 0.03 0.25 8.14 -2.38 -0.02 0.23 16 26 H 0.07 0.59 8.12 -2.39 -0.02 0.57 16 27 H 0.08 0.56 8.12 -2.39 -0.02 0.54 16 28 H 0.06 0.94 6.47 -2.38 -0.02 0.92 16 29 H 0.08 0.85 8.12 -2.39 -0.02 0.83 16 30 H 0.03 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.10 0.80 8.06 -2.39 -0.02 0.78 16 32 H 0.05 0.47 8.12 -2.38 -0.02 0.46 16 33 H 0.05 1.06 6.55 -2.39 -0.02 1.05 16 34 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 35 H 0.42 2.95 8.47 -92.70 -0.79 2.16 16 36 H 0.13 1.68 8.08 -2.39 -0.02 1.66 16 37 H 0.13 1.69 8.08 -2.39 -0.02 1.68 16 38 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 39 H 0.12 5.54 5.64 -2.91 -0.02 5.52 16 40 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 41 H 0.11 5.07 8.06 -2.91 -0.02 5.04 16 42 H 0.15 4.10 8.06 -2.91 -0.02 4.08 16 Total: -1.00 -84.66 354.64 1.18 -83.48 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: 0.24 Total: 21.43 kcal Atomic # 6 Polarization: -36.67 SS G_CDS: 6.22 Total: -30.44 kcal Atomic # 7 Polarization: -77.05 SS G_CDS: -7.04 Total: -84.09 kcal Atomic # 8 Polarization: -36.55 SS G_CDS: -0.27 Total: -36.82 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -84.66 1.18 -83.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111660389.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.640 kcal (2) G-P(sol) polarization free energy of solvation -84.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds