Wall clock time and date at job start Tue Mar 31 2020 02:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38228 * 120.00208 * 2 1 4 4 C 1.38239 * 120.00115 * 179.97438 * 3 2 1 5 5 C 1.38242 * 119.99789 * 0.25483 * 4 3 2 6 6 C 1.50694 * 120.00029 * 179.71993 * 5 4 3 7 7 N 1.46902 * 109.46696 * 90.00278 * 6 5 4 8 8 C 1.46900 * 111.00081 * 66.04823 * 7 6 5 9 9 C 1.52995 * 109.47229 * 53.72747 * 8 7 6 10 10 O 1.42909 * 109.46963 * 67.59932 * 9 8 7 11 11 C 1.46903 * 110.99969 * 189.99802 * 7 6 5 12 12 C 1.50697 * 109.47048 * 171.62836 * 11 7 6 13 13 O 1.21296 * 120.00274 * 353.37079 * 12 11 7 14 14 N 1.34780 * 119.99970 * 173.37022 * 12 11 7 15 15 C 1.37102 * 119.99954 * 179.97438 * 14 12 11 16 16 H 1.08000 * 120.00252 * 0.02562 * 15 14 12 17 17 C 1.38952 * 120.00000 * 179.97438 * 15 14 12 18 18 N 1.31411 * 119.99765 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99937 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47288 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46825 * 120.00452 * 19 17 15 22 22 H 1.48502 * 109.46958 * 240.00299 * 19 17 15 23 23 C 1.38232 * 119.99718 * 359.49096 * 5 4 3 24 24 C 1.38234 * 119.99702 * 179.97438 * 2 1 3 25 25 H 1.08995 * 109.47321 * 89.99961 * 1 2 3 26 26 H 1.08998 * 109.47794 * 210.00051 * 1 2 3 27 27 H 1.08999 * 109.46974 * 330.00085 * 1 2 3 28 28 H 1.07998 * 120.00123 * 359.97438 * 3 2 1 29 29 H 1.07998 * 120.00446 * 179.97438 * 4 3 2 30 30 H 1.08991 * 109.47646 * 210.00018 * 6 5 4 31 31 H 1.09001 * 109.47350 * 330.00861 * 6 5 4 32 32 H 1.09001 * 109.47357 * 173.72893 * 8 7 6 33 33 H 1.09003 * 109.46911 * 293.73131 * 8 7 6 34 34 H 1.08999 * 109.47505 * 187.59471 * 9 8 7 35 35 H 1.09006 * 109.47254 * 307.60151 * 9 8 7 36 36 H 0.96701 * 113.99908 * 180.02562 * 10 9 8 37 37 H 1.08998 * 109.47434 * 291.63372 * 11 7 6 38 38 H 1.09002 * 109.46765 * 51.63151 * 11 7 6 39 39 H 0.96998 * 119.99934 * 359.97438 * 14 12 11 40 40 H 0.97000 * 119.99689 * 179.97438 * 18 17 15 41 41 H 1.08002 * 120.00257 * 180.25445 * 23 5 4 42 42 H 1.08009 * 120.00218 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1970 0.0005 5 6 4.2717 -0.0002 -0.0043 6 6 5.7786 -0.0003 -0.0100 7 7 6.2735 -0.0028 1.3731 8 6 5.9266 -1.2574 2.0541 9 6 6.4215 -2.4426 1.2228 10 8 7.8505 -2.4586 1.2196 11 6 7.7226 0.2351 1.4142 12 6 8.1593 0.4302 2.8433 13 8 7.3310 0.4964 3.7269 14 7 9.4702 0.5310 3.1396 15 6 9.8675 0.7090 4.4396 16 1 9.1300 0.7680 5.2264 17 6 11.2190 0.8124 4.7452 18 7 12.1164 0.7401 3.7879 19 14 11.7603 1.0541 6.5166 20 1 10.5655 1.1019 7.3972 21 1 12.6319 -0.0761 6.9264 22 1 12.5138 2.3283 6.6344 23 6 3.5805 -1.1973 0.0011 24 6 2.1981 -1.1972 0.0005 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6582 2.1324 -0.0004 29 1 4.1206 2.1323 0.0001 30 1 6.1400 -0.8892 -0.5268 31 1 6.1401 0.8907 -0.5236 32 1 6.3986 -1.2802 3.0363 33 1 4.8446 -1.3210 2.1693 34 1 6.0488 -3.3709 1.6557 35 1 6.0569 -2.3465 0.2000 36 1 8.2345 -3.1852 0.7099 37 1 8.2439 -0.6224 0.9888 38 1 7.9606 1.1283 0.8364 39 1 10.1326 0.4776 2.4330 40 1 13.0599 0.8126 4.0012 41 1 4.1204 -2.1327 0.0015 42 1 1.6580 -2.1326 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181961687.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:27 Heat of formation + Delta-G solvation = -75.097232 kcal Electronic energy + Delta-G solvation = -23467.017907 eV Core-core repulsion = 20025.179575 eV Total energy + Delta-G solvation = -3441.838332 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.98392 -40.01586 -38.67325 -36.65401 -35.82442 -33.79390 -33.21115 -31.85485 -30.55338 -29.78730 -27.55167 -25.94385 -25.09379 -23.54645 -22.59923 -21.22613 -20.70148 -19.76569 -18.59515 -17.84353 -17.41560 -16.89605 -16.48794 -16.35944 -15.99829 -15.89321 -15.63443 -15.34626 -14.91450 -14.48757 -14.29906 -14.23640 -13.83093 -13.63333 -13.44270 -13.16418 -13.09651 -13.01069 -12.75930 -12.64801 -12.45485 -12.37601 -12.24937 -12.10997 -11.87293 -11.73783 -11.43849 -10.75714 -10.22145 -9.94295 -9.75088 -9.41567 -8.96419 -8.42682 -5.90567 0.44294 0.56872 1.37250 1.40784 1.55691 2.15064 2.31009 2.69361 3.13744 3.24567 3.36755 3.53692 3.87317 3.91091 4.07004 4.15758 4.17580 4.25714 4.36478 4.41369 4.46335 4.55497 4.65119 4.67997 4.70413 4.80067 4.87494 4.91844 5.01582 5.02916 5.18307 5.24978 5.33265 5.43610 5.55415 5.75641 5.77263 5.93962 6.13056 6.18356 6.27889 6.66718 6.90861 7.18303 7.63838 8.20885 8.75468 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.027901 B = 0.003322 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.311047 B = 8425.693836 C = 8805.544145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.098 4.098 3 C -0.132 4.132 4 C -0.111 4.111 5 C -0.090 4.090 6 C 0.089 3.911 7 N -0.521 5.521 8 C 0.054 3.946 9 C 0.039 3.961 10 O -0.582 6.582 11 C 0.047 3.953 12 C 0.452 3.548 13 O -0.622 6.622 14 N -0.576 5.576 15 C -0.328 4.328 16 H 0.075 0.925 17 C -0.016 4.016 18 N -0.923 5.923 19 Si 0.992 3.008 20 H -0.275 1.275 21 H -0.270 1.270 22 H -0.270 1.270 23 C -0.118 4.118 24 C -0.129 4.129 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.134 0.866 29 H 0.120 0.880 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.054 0.946 33 H 0.090 0.910 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.389 0.611 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.394 0.606 40 H 0.276 0.724 41 H 0.130 0.870 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.118 -6.069 -13.846 22.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.098 4.098 3 C -0.150 4.150 4 C -0.130 4.130 5 C -0.091 4.091 6 C -0.037 4.037 7 N -0.244 5.244 8 C -0.075 4.075 9 C -0.039 4.039 10 O -0.391 6.391 11 C -0.083 4.083 12 C 0.240 3.760 13 O -0.508 6.508 14 N -0.213 5.213 15 C -0.458 4.458 16 H 0.093 0.907 17 C -0.215 4.215 18 N -0.564 5.564 19 Si 0.816 3.184 20 H -0.200 1.200 21 H -0.196 1.196 22 H -0.195 1.195 23 C -0.137 4.137 24 C -0.147 4.147 25 H 0.099 0.901 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.151 0.849 29 H 0.138 0.862 30 H 0.079 0.921 31 H 0.104 0.896 32 H 0.072 0.928 33 H 0.108 0.892 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.239 0.761 37 H 0.116 0.884 38 H 0.113 0.887 39 H 0.227 0.773 40 H 0.086 0.914 41 H 0.148 0.852 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -17.769 -5.091 -12.634 22.389 hybrid contribution 1.404 -0.840 -0.036 1.637 sum -16.364 -5.931 -12.670 21.529 Atomic orbital electron populations 1.20815 0.89488 1.03411 1.03056 1.20268 0.97467 0.93034 0.99062 1.21258 0.93913 0.98574 1.01273 1.21189 0.94715 0.97906 0.99163 1.19777 0.94742 0.93849 1.00730 1.21170 0.91376 1.02552 0.88634 1.61746 1.12228 1.34827 1.15646 1.22248 1.00689 0.86544 0.97981 1.23075 0.81329 0.98970 1.00548 1.86641 1.20363 1.54775 1.77324 1.22006 0.89617 1.03503 0.93214 1.20754 0.82182 0.81279 0.91781 1.90451 1.52757 1.56704 1.50904 1.41890 1.06092 1.64654 1.08685 1.19657 0.92200 1.48349 0.85587 0.90725 1.26018 0.94996 0.96728 1.03718 1.69691 1.02064 1.50712 1.33960 0.84888 0.78001 0.78331 0.77195 1.19968 1.19550 1.19507 1.21259 0.94779 0.97540 1.00105 1.21270 0.93942 0.98434 1.01063 0.90146 0.90756 0.91164 0.84860 0.86211 0.92064 0.89594 0.92785 0.89211 0.92068 0.90875 0.76085 0.88383 0.88682 0.77258 0.91437 0.85175 0.84182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.45 10.01 71.24 0.71 -0.73 16 2 C -0.10 -1.88 5.88 -19.87 -0.12 -2.00 16 3 C -0.13 -2.83 9.70 22.27 0.22 -2.61 16 4 C -0.11 -2.74 9.70 22.27 0.22 -2.53 16 5 C -0.09 -2.23 4.89 -19.87 -0.10 -2.33 16 6 C 0.09 2.30 4.80 85.55 0.41 2.71 16 7 N -0.52 -18.05 4.43 -905.38 -4.01 -22.06 16 8 C 0.05 1.82 4.99 86.30 0.43 2.25 16 9 C 0.04 0.99 6.23 71.98 0.45 1.44 16 10 O -0.58 -16.51 10.53 -148.98 -1.57 -18.07 16 11 C 0.05 1.80 5.13 85.56 0.44 2.24 16 12 C 0.45 23.26 7.25 87.66 0.64 23.89 16 13 O -0.62 -36.74 14.19 -3.08 -0.04 -36.78 16 14 N -0.58 -31.56 5.29 -306.97 -1.62 -33.18 16 15 C -0.33 -19.61 9.68 84.04 0.81 -18.80 16 16 H 0.07 4.77 7.16 -2.91 -0.02 4.75 16 17 C -0.02 -0.87 5.50 84.93 0.47 -0.40 16 18 N -0.92 -51.75 13.05 21.66 0.28 -51.46 16 19 Si 0.99 44.71 29.55 68.60 2.03 46.73 16 20 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 21 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 22 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 23 C -0.12 -2.51 8.03 22.27 0.18 -2.33 16 24 C -0.13 -2.46 9.70 22.27 0.22 -2.25 16 25 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.07 0.83 8.09 -2.39 -0.02 0.81 16 27 H 0.07 0.85 8.09 -2.39 -0.02 0.83 16 28 H 0.13 2.33 8.06 -2.91 -0.02 2.31 16 29 H 0.12 2.90 8.06 -2.91 -0.02 2.88 16 30 H 0.06 1.37 5.64 -2.39 -0.01 1.35 16 31 H 0.09 2.09 7.90 -2.39 -0.02 2.07 16 32 H 0.05 2.42 5.86 -2.39 -0.01 2.41 16 33 H 0.09 2.85 6.57 -2.39 -0.02 2.83 16 34 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.07 1.44 4.37 -2.38 -0.01 1.43 16 36 H 0.39 6.96 9.12 -74.06 -0.68 6.29 16 37 H 0.10 3.53 5.08 -2.39 -0.01 3.52 16 38 H 0.10 3.31 7.96 -2.39 -0.02 3.29 16 39 H 0.39 20.68 7.90 -92.71 -0.73 19.95 16 40 H 0.28 14.41 8.31 -92.71 -0.77 13.64 16 41 H 0.13 2.31 6.10 -2.91 -0.02 2.29 16 42 H 0.14 1.97 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -74.86 338.44 -0.31 -75.17 By element: Atomic # 1 Polarization: 41.46 SS G_CDS: -0.35 Total: 41.11 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: 4.97 Total: -1.45 kcal Atomic # 7 Polarization: -101.36 SS G_CDS: -5.35 Total: -106.71 kcal Atomic # 8 Polarization: -53.24 SS G_CDS: -1.61 Total: -54.86 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -74.86 -0.31 -75.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181961687.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.073 kcal (2) G-P(sol) polarization free energy of solvation -74.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds