Wall clock time and date at job start Tue Mar 31 2020 02:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47231 * 326.89860 * 3 2 1 5 5 C 1.37099 * 120.00438 * 264.18516 * 4 3 2 6 6 H 1.07995 * 120.00396 * 204.52953 * 5 4 3 7 7 C 1.38948 * 119.99520 * 24.52317 * 5 4 3 8 8 N 1.31411 * 120.00522 * 19.54994 * 7 5 4 9 9 Si 1.86804 * 119.99851 * 199.54639 * 7 5 4 10 10 H 1.48503 * 109.47015 * 60.00294 * 9 7 5 11 11 H 1.48503 * 109.46893 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47154 * 300.00266 * 9 7 5 13 13 C 1.34780 * 119.99977 * 84.18685 * 4 3 2 14 14 O 1.21290 * 120.00090 * 175.59026 * 13 4 3 15 15 C 1.50702 * 119.99955 * 355.59551 * 13 4 3 16 16 H 1.09001 * 109.46855 * 341.64736 * 15 13 4 17 17 C 1.52997 * 109.47227 * 101.64517 * 15 13 4 18 18 C 1.53001 * 109.47085 * 181.86737 * 17 15 13 19 19 C 1.53003 * 109.47397 * 301.87052 * 17 15 13 20 20 N 1.46497 * 109.46766 * 221.64495 * 15 13 4 21 21 C 1.46769 * 124.34531 * 120.00059 * 20 15 13 22 22 C 1.54483 * 105.47166 * 162.95877 * 21 20 15 23 23 C 1.54633 * 101.76540 * 25.41713 * 22 21 20 24 24 C 1.34416 * 124.35434 * 299.97474 * 20 15 13 25 25 O 1.21278 * 124.93881 * 0.39526 * 24 20 15 26 26 H 4.40631 * 5.51372 * 179.97438 * 4 1 2 27 27 H 1.08999 * 109.47140 * 206.89695 * 3 2 1 28 28 H 1.09002 * 109.47183 * 86.90385 * 3 2 1 29 29 H 0.96994 * 120.00463 * 180.02562 * 8 7 5 30 30 H 1.09005 * 109.46893 * 61.87020 * 17 15 13 31 31 H 1.08997 * 109.46664 * 60.00428 * 18 17 15 32 32 H 1.09004 * 109.47035 * 180.02562 * 18 17 15 33 33 H 1.08995 * 109.46834 * 300.00061 * 18 17 15 34 34 H 1.08996 * 109.47055 * 54.65346 * 19 17 15 35 35 H 1.08998 * 109.47497 * 174.65546 * 19 17 15 36 36 H 1.08999 * 109.46892 * 294.66134 * 19 17 15 37 37 H 1.08994 * 110.24748 * 43.96250 * 21 20 15 38 38 H 1.08996 * 110.24530 * 281.96041 * 21 20 15 39 39 H 1.08999 * 110.96975 * 143.53394 * 22 21 20 40 40 H 1.08997 * 110.97287 * 267.29655 * 22 21 20 41 41 H 1.09003 * 110.48561 * 93.87395 * 23 22 21 42 42 H 1.08995 * 110.48585 * 216.52418 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -1.1561 0.7543 5 6 3.4767 -1.0188 2.0748 6 1 4.1809 -1.7032 2.5244 7 6 2.9173 0.0011 2.8348 8 7 1.8079 0.5833 2.4383 9 14 3.7421 0.5446 4.4203 10 1 5.1140 1.0296 4.1235 11 1 2.9532 1.6405 5.0382 12 1 3.8153 -0.6036 5.3591 13 6 3.2485 -2.3555 0.1500 14 8 3.7280 -3.2940 0.7504 15 6 2.7801 -2.5304 -1.2716 16 1 2.1029 -1.7175 -1.5336 17 6 3.9867 -2.5121 -2.2121 18 6 3.5074 -2.6430 -3.6592 19 6 4.7451 -1.1940 -2.0433 20 7 2.0796 -3.8105 -1.4009 21 6 0.6801 -3.9500 -1.8207 22 6 0.5179 -5.4311 -2.2287 23 6 1.6298 -6.1110 -1.3966 24 6 2.6360 -5.0083 -1.1507 25 8 3.7786 -5.1800 -0.7822 26 1 -1.0498 -0.0002 0.0003 27 1 3.0089 0.9173 0.4649 28 1 3.0093 -0.0547 -1.0262 29 1 1.4176 1.2955 2.9686 30 1 4.6476 -3.3449 -1.9715 31 1 2.8466 -1.8101 -3.8997 32 1 4.3671 -2.6304 -4.3293 33 1 2.9672 -3.5820 -3.7795 34 1 5.0041 -1.0558 -0.9936 35 1 5.6557 -1.2194 -2.6418 36 1 4.1157 -0.3678 -2.3740 37 1 0.4749 -3.2999 -2.6711 38 1 0.0125 -3.7115 -0.9929 39 1 -0.4654 -5.8078 -1.9473 40 1 0.6937 -5.5631 -3.2963 41 1 1.2286 -6.4788 -0.4521 42 1 2.0856 -6.9243 -1.9612 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281559853.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:51:10 Heat of formation + Delta-G solvation = -15.905847 kcal Electronic energy + Delta-G solvation = -25327.042986 eV Core-core repulsion = 21887.771385 eV Total energy + Delta-G solvation = -3439.271601 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.82694 -40.12496 -37.35987 -37.03169 -36.57475 -33.93458 -32.99070 -32.58433 -28.91094 -28.36588 -27.96229 -27.78990 -26.07677 -22.76562 -21.98882 -21.57273 -19.70882 -19.43211 -18.52749 -18.30984 -17.50732 -17.14643 -16.57932 -16.33590 -15.96538 -15.59782 -15.16669 -14.79447 -14.56601 -14.50959 -14.18060 -13.98652 -13.88649 -13.63257 -13.55867 -13.48391 -13.21421 -12.94068 -12.80027 -12.52871 -12.29800 -12.20102 -12.10539 -11.97343 -11.91461 -11.63388 -11.14388 -11.04251 -10.65641 -10.56555 -10.31961 -9.74005 -9.39753 -8.28751 -5.96367 1.33794 1.38082 1.47257 1.66931 1.90682 2.14734 2.28216 2.34822 2.39852 3.02357 3.17171 3.54016 3.70440 3.83206 3.88739 3.94086 4.03246 4.09100 4.26110 4.31219 4.38503 4.58649 4.67469 4.70865 4.74702 4.76703 4.86083 4.87914 4.95827 4.97631 5.11266 5.17829 5.25856 5.33152 5.39834 5.44740 5.45493 5.68282 6.09905 6.36812 6.48782 7.17133 7.19888 7.40905 7.44129 8.04735 8.67207 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.017810 B = 0.005984 C = 0.005917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.733223 B = 4678.266326 C = 4731.171777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.158 4.158 3 C 0.230 3.770 4 N -0.451 5.451 5 C -0.354 4.354 6 H 0.061 0.939 7 C 0.008 3.992 8 N -0.866 5.866 9 Si 0.977 3.023 10 H -0.268 1.268 11 H -0.268 1.268 12 H -0.285 1.285 13 C 0.438 3.562 14 O -0.603 6.603 15 C 0.160 3.840 16 H 0.110 0.890 17 C -0.101 4.101 18 C -0.127 4.127 19 C -0.150 4.150 20 N -0.610 5.610 21 C 0.092 3.908 22 C -0.108 4.108 23 C -0.150 4.150 24 C 0.491 3.509 25 O -0.558 6.558 26 H 0.233 0.767 27 H 0.082 0.918 28 H 0.100 0.900 29 H 0.271 0.729 30 H 0.048 0.952 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.029 0.971 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.105 0.895 38 H 0.058 0.942 39 H 0.117 0.883 40 H 0.106 0.894 41 H 0.098 0.902 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.097 -2.452 -15.301 17.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.160 4.160 3 C 0.108 3.892 4 N -0.171 5.171 5 C -0.482 4.482 6 H 0.079 0.921 7 C -0.196 4.196 8 N -0.503 5.503 9 Si 0.801 3.199 10 H -0.193 1.193 11 H -0.193 1.193 12 H -0.211 1.211 13 C 0.226 3.774 14 O -0.486 6.486 15 C 0.053 3.947 16 H 0.128 0.872 17 C -0.121 4.121 18 C -0.184 4.184 19 C -0.207 4.207 20 N -0.345 5.345 21 C -0.029 4.029 22 C -0.145 4.145 23 C -0.190 4.190 24 C 0.280 3.720 25 O -0.435 6.435 26 H 0.250 0.750 27 H 0.101 0.899 28 H 0.117 0.883 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.048 0.952 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.123 0.877 38 H 0.076 0.924 39 H 0.135 0.865 40 H 0.125 0.875 41 H 0.117 0.883 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.345 -2.771 -14.717 16.264 hybrid contribution 0.466 0.377 1.830 1.926 sum -5.879 -2.394 -12.887 14.365 Atomic orbital electron populations 1.25055 0.96146 1.00360 1.03743 1.23330 0.94845 1.00263 0.97574 1.18422 0.85053 0.90250 0.95520 1.43804 1.56996 1.06721 1.09591 1.19342 1.25278 1.16359 0.87192 0.92125 1.25898 0.94975 0.97205 1.01503 1.70118 1.15432 1.24451 1.40258 0.85261 0.78818 0.77737 0.78036 1.19298 1.19261 1.21093 1.21365 0.83315 0.82390 0.90353 1.90606 1.48800 1.40948 1.68261 1.20890 0.95682 0.86684 0.91423 0.87174 1.21358 0.95234 0.98989 0.96537 1.21699 1.01903 1.02525 0.92297 1.21970 1.01248 0.96397 1.01123 1.48207 1.13812 1.04724 1.67722 1.22415 0.79849 1.00035 1.00607 1.22610 0.99386 0.91255 1.01239 1.22369 0.96315 0.96868 1.03415 1.21808 0.88281 0.86155 0.75760 1.90702 1.21308 1.85301 1.46224 0.74996 0.89944 0.88258 0.91859 0.93353 0.90508 0.91114 0.92641 0.95220 0.90234 0.89814 0.87704 0.92358 0.86486 0.87535 0.88328 0.86794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -8.73 19.24 74.32 1.43 -7.30 16 2 C -0.16 -6.70 10.11 31.12 0.31 -6.38 16 3 C 0.23 10.05 4.41 84.57 0.37 10.42 16 4 N -0.45 -23.80 2.27 -645.44 -1.46 -25.26 16 5 C -0.35 -20.87 9.21 84.04 0.77 -20.10 16 6 H 0.06 3.95 7.46 -2.91 -0.02 3.92 16 7 C 0.01 0.44 4.86 84.93 0.41 0.86 16 8 N -0.87 -45.58 9.61 21.66 0.21 -45.37 16 9 Si 0.98 43.66 29.60 68.60 2.03 45.69 16 10 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 11 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 12 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 13 C 0.44 22.94 5.39 87.66 0.47 23.41 16 14 O -0.60 -38.14 13.69 18.79 0.26 -37.89 16 15 C 0.16 6.23 1.82 44.25 0.08 6.31 16 16 H 0.11 3.86 5.41 -2.39 -0.01 3.84 16 17 C -0.10 -3.47 2.39 -10.79 -0.03 -3.49 16 18 C -0.13 -2.99 9.05 71.98 0.65 -2.34 16 19 C -0.15 -4.72 7.78 71.98 0.56 -4.16 16 20 N -0.61 -21.37 2.14 -798.21 -1.71 -23.08 16 21 C 0.09 2.13 7.30 86.83 0.63 2.77 16 22 C -0.11 -1.70 7.18 31.65 0.23 -1.47 16 23 C -0.15 -3.71 6.86 30.59 0.21 -3.50 16 24 C 0.49 19.24 7.05 87.90 0.62 19.86 16 25 O -0.56 -28.57 14.20 18.82 0.27 -28.30 16 26 H 0.23 6.55 7.80 -4.43 -0.03 6.51 16 27 H 0.08 3.84 6.90 -2.39 -0.02 3.83 16 28 H 0.10 3.56 3.87 -2.39 -0.01 3.55 16 29 H 0.27 13.53 8.31 -92.71 -0.77 12.76 16 30 H 0.05 2.08 6.74 -2.38 -0.02 2.06 16 31 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.05 1.28 7.66 -2.39 -0.02 1.26 16 34 H 0.03 1.16 6.42 -2.39 -0.02 1.14 16 35 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.08 2.15 6.65 -2.39 -0.02 2.13 16 37 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 42 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -84.22 335.97 7.34 -76.87 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: 1.02 Total: 22.46 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: 6.73 Total: 14.87 kcal Atomic # 7 Polarization: -90.75 SS G_CDS: -2.96 Total: -93.71 kcal Atomic # 8 Polarization: -66.71 SS G_CDS: 0.52 Total: -66.19 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -84.22 7.34 -76.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281559853.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.969 kcal (2) G-P(sol) polarization free energy of solvation -84.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds