Wall clock time and date at job start Tue Mar 31 2020 03:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42898 * 113.99577 * 2 1 4 4 C 1.53003 * 109.46563 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47550 * 64.99597 * 4 3 2 6 6 C 1.36936 * 120.00439 * 274.21201 * 5 4 3 7 7 H 1.08002 * 119.99428 * 337.88236 * 6 5 4 8 8 C 1.38814 * 120.00366 * 157.88087 * 6 5 4 9 9 N 1.31615 * 119.99706 * 7.57033 * 8 6 5 10 10 Si 1.86804 * 119.99901 * 187.57191 * 8 6 5 11 11 H 1.48491 * 109.47068 * 89.99802 * 10 8 6 12 12 H 1.48501 * 109.47002 * 210.00264 * 10 8 6 13 13 H 1.48496 * 109.46932 * 329.99654 * 10 8 6 14 14 C 1.46507 * 119.99899 * 94.20587 * 5 4 3 15 15 C 1.50701 * 109.47050 * 270.00296 * 14 5 4 16 16 O 1.21283 * 120.00117 * 0.02562 * 15 14 5 17 17 N 1.34773 * 120.00035 * 179.97438 * 15 14 5 18 18 C 1.46498 * 120.00225 * 179.97438 * 17 15 14 19 19 C 1.50703 * 109.47417 * 180.02562 * 18 17 15 20 20 C 1.38237 * 120.00036 * 89.99986 * 19 18 17 21 21 C 1.38228 * 120.00065 * 179.97438 * 20 19 18 22 22 C 1.38234 * 120.00050 * 359.97438 * 21 20 19 23 23 C 1.38235 * 120.00204 * 0.28351 * 22 21 20 24 24 C 1.38236 * 120.00003 * 269.98411 * 19 18 17 25 25 H 1.09005 * 109.46998 * 300.00459 * 1 2 3 26 26 H 1.08995 * 109.47111 * 59.99802 * 1 2 3 27 27 H 1.08995 * 109.47071 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47493 * 60.00306 * 3 2 1 29 29 H 1.08998 * 109.47328 * 299.99055 * 3 2 1 30 30 H 1.08999 * 109.46993 * 304.99445 * 4 3 2 31 31 H 1.08999 * 109.47423 * 185.00111 * 4 3 2 32 32 H 0.96999 * 119.99619 * 179.97438 * 9 8 6 33 33 H 1.08993 * 109.47101 * 150.00511 * 14 5 4 34 34 H 1.08994 * 109.47377 * 30.00103 * 14 5 4 35 35 H 0.97008 * 120.00060 * 0.02562 * 17 15 14 36 36 H 1.08997 * 109.47229 * 60.00441 * 18 17 15 37 37 H 1.08999 * 109.47403 * 300.00656 * 18 17 15 38 38 H 1.08004 * 119.99712 * 359.97438 * 20 19 18 39 39 H 1.08001 * 120.00179 * 180.02562 * 21 20 19 40 40 H 1.08005 * 120.00160 * 179.97438 * 22 21 20 41 41 H 1.08000 * 120.00446 * 179.72393 * 23 22 21 42 42 H 1.08001 * 119.99747 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2526 6 6 4.0142 -0.7999 -1.3644 7 1 4.0750 -1.4128 -0.4772 8 6 3.9752 -1.3951 -2.6179 9 7 4.0516 -0.6522 -3.7017 10 14 3.8142 -3.2502 -2.7664 11 1 2.3770 -3.6196 -2.8203 12 1 4.4899 -3.7080 -4.0070 13 1 4.4480 -3.8978 -1.5899 14 6 4.3747 1.4036 -2.3852 15 6 3.1713 1.6921 -3.2452 16 8 2.0869 1.2415 -2.9416 17 7 3.2997 2.4517 -4.3510 18 6 2.1299 2.7317 -5.1873 19 6 2.5403 3.5951 -6.3523 20 6 2.9562 3.0099 -7.5337 21 6 3.3321 3.8019 -8.6024 22 6 3.2916 5.1790 -8.4901 23 6 2.8808 5.7643 -7.3071 24 6 2.5005 4.9723 -6.2398 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.6886 1.8464 0.8899 29 1 1.6887 1.8463 -0.8900 30 1 3.8514 0.5683 0.8410 31 1 3.9786 2.1764 0.0889 32 1 4.0247 -1.0681 -4.5776 33 1 5.1272 0.8820 -2.9766 34 1 4.7895 2.3409 -2.0146 35 1 4.1669 2.8125 -4.5937 36 1 1.3769 3.2527 -4.5961 37 1 1.7158 1.7943 -5.5584 38 1 2.9874 1.9339 -7.6215 39 1 3.6566 3.3447 -9.5255 40 1 3.5857 5.7978 -9.3250 41 1 2.8535 6.8403 -7.2178 42 1 2.1750 5.4295 -5.3171 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316975737.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:20 Heat of formation + Delta-G solvation = -19.697052 kcal Electronic energy + Delta-G solvation = -23932.136121 eV Core-core repulsion = 20492.700121 eV Total energy + Delta-G solvation = -3439.436000 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.31729 -38.08585 -36.82477 -34.99402 -33.74128 -31.38170 -30.91600 -30.85555 -28.68009 -26.96998 -25.47756 -25.05102 -22.98797 -22.51134 -21.16772 -20.41106 -19.21465 -17.08179 -16.62997 -15.80138 -15.49798 -15.27995 -15.12284 -14.90458 -14.58213 -14.45914 -13.94607 -13.68204 -13.38881 -13.13448 -12.93423 -12.77621 -12.44971 -12.15844 -11.79654 -11.69733 -11.22187 -10.99115 -10.93501 -10.90478 -10.75259 -10.73920 -10.31291 -9.95773 -9.93018 -9.66774 -8.92108 -8.89188 -8.66107 -8.53870 -8.05614 -7.88492 -6.68627 -5.65502 -3.02574 1.34091 1.43401 3.50244 3.56571 3.59253 3.75631 4.37036 4.51572 4.72661 4.83055 4.90419 4.93009 5.02707 5.17209 5.48971 5.52647 5.55463 5.68473 5.88897 5.89751 5.94695 6.07981 6.14315 6.21470 6.24407 6.31757 6.35530 6.39647 6.46437 6.48691 6.52008 6.55236 6.77095 6.87827 7.03029 7.08801 7.45056 7.58049 7.92373 8.21593 8.48520 8.80033 9.34104 9.86359 9.99523 10.39816 11.42290 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.016512 B = 0.004656 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.347116 B = 6012.443597 C = 6913.911790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.356 6.356 3 C 0.043 3.957 4 C 0.148 3.852 5 N -0.570 5.570 6 C -0.214 4.214 7 H 0.073 0.927 8 C 0.004 3.996 9 N -0.914 5.914 10 Si 0.909 3.091 11 H -0.291 1.291 12 H -0.296 1.296 13 H -0.283 1.283 14 C 0.165 3.835 15 C 0.529 3.471 16 O -0.536 6.536 17 N -0.745 5.745 18 C 0.167 3.833 19 C -0.091 4.091 20 C -0.101 4.101 21 C -0.124 4.124 22 C -0.124 4.124 23 C -0.126 4.126 24 C -0.106 4.106 25 H 0.020 0.980 26 H 0.034 0.966 27 H 0.071 0.929 28 H 0.013 0.987 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.250 0.750 33 H 0.120 0.880 34 H 0.024 0.976 35 H 0.387 0.613 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.125 0.875 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.948 12.322 -4.928 13.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C -0.036 4.036 4 C 0.021 3.979 5 N -0.289 5.289 6 C -0.343 4.343 7 H 0.091 0.909 8 C -0.191 4.191 9 N -0.563 5.563 10 Si 0.741 3.259 11 H -0.218 1.218 12 H -0.223 1.223 13 H -0.209 1.209 14 C 0.035 3.965 15 C 0.316 3.684 16 O -0.411 6.411 17 N -0.401 5.401 18 C 0.043 3.957 19 C -0.092 4.092 20 C -0.119 4.119 21 C -0.142 4.142 22 C -0.142 4.142 23 C -0.144 4.144 24 C -0.125 4.125 25 H 0.039 0.961 26 H 0.052 0.948 27 H 0.089 0.911 28 H 0.031 0.969 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.137 0.863 34 H 0.042 0.958 35 H 0.218 0.782 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.143 0.857 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.612 11.679 -4.771 12.719 hybrid contribution -0.351 -0.625 -0.646 0.965 sum -1.963 11.054 -5.417 12.466 Atomic orbital electron populations 1.22519 0.83914 1.01137 0.98282 1.88054 1.16974 1.27472 1.94855 1.23432 0.97468 0.84907 0.97780 1.21013 0.90244 0.96245 0.90447 1.43758 1.73916 1.02895 1.08357 1.19169 1.41336 0.81363 0.92416 0.90897 1.24841 1.00934 0.97803 0.95551 1.69635 1.56489 1.33144 0.97018 0.86172 0.77671 0.85605 0.76481 1.21834 1.22328 1.20862 1.20786 0.94344 0.92264 0.89153 1.22122 0.92230 0.73991 0.80033 1.90494 1.29159 1.49345 1.72055 1.46274 1.09778 1.56272 1.27763 1.19898 0.89870 0.97154 0.88776 1.20152 0.99371 0.94047 0.95583 1.21192 0.97746 1.00313 0.92662 1.21146 1.00391 0.93850 0.98768 1.21124 1.00387 0.94984 0.97735 1.21111 1.00093 0.99603 0.93548 1.21113 0.99489 0.93175 0.98695 0.96149 0.94785 0.91081 0.96934 0.92569 0.93049 0.92944 0.93922 0.86267 0.95835 0.78153 0.92410 0.91872 0.85747 0.86227 0.86432 0.86301 0.86064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 11.01 101.05 1.11 1.87 16 2 O -0.36 -8.44 9.98 -35.23 -0.35 -8.79 16 3 C 0.04 0.93 5.87 37.16 0.22 1.15 16 4 C 0.15 3.15 6.17 -4.04 -0.02 3.13 16 5 N -0.57 -14.21 2.06 -174.61 -0.36 -14.57 16 6 C -0.21 -5.93 9.00 -15.06 -0.14 -6.07 16 7 H 0.07 2.05 7.84 -52.49 -0.41 1.63 16 8 C 0.00 0.11 5.41 -17.43 -0.09 0.01 16 9 N -0.91 -25.53 8.21 55.49 0.46 -25.07 16 10 Si 0.91 23.07 29.56 -169.99 -5.03 18.05 16 11 H -0.29 -7.70 7.11 56.52 0.40 -7.30 16 12 H -0.30 -7.49 7.11 56.52 0.40 -7.08 16 13 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 14 C 0.16 3.79 5.47 -5.19 -0.03 3.76 16 15 C 0.53 12.26 5.78 -10.99 -0.06 12.19 16 16 O -0.54 -14.53 13.75 5.56 0.08 -14.45 16 17 N -0.75 -14.03 5.55 -61.47 -0.34 -14.37 16 18 C 0.17 2.88 5.80 -5.19 -0.03 2.85 16 19 C -0.09 -1.28 5.25 -104.62 -0.55 -1.83 16 20 C -0.10 -1.35 9.70 -39.59 -0.38 -1.74 16 21 C -0.12 -1.42 10.05 -39.59 -0.40 -1.82 16 22 C -0.12 -1.31 10.05 -39.58 -0.40 -1.70 16 23 C -0.13 -1.35 10.05 -39.58 -0.40 -1.75 16 24 C -0.11 -1.31 9.70 -39.58 -0.38 -1.70 16 25 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 1.32 6.03 -51.93 -0.31 1.01 16 30 H 0.05 1.08 8.07 -51.93 -0.42 0.66 16 31 H 0.05 0.96 7.84 -51.93 -0.41 0.55 16 32 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 33 H 0.12 2.97 6.24 -51.93 -0.32 2.65 16 34 H 0.02 0.47 7.86 -51.93 -0.41 0.06 16 35 H 0.39 6.46 8.46 -40.82 -0.35 6.12 16 36 H 0.06 1.00 8.09 -51.93 -0.42 0.58 16 37 H 0.06 1.23 8.08 -51.93 -0.42 0.81 16 38 H 0.12 1.71 8.06 -52.48 -0.42 1.29 16 39 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 40 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 41 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 42 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 349.41 15.07 5.27 5.27 Total: -1.00 -32.68 349.41 -8.25 -40.93 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -6.41 Total: 4.66 kcal Atomic # 6 Polarization: 9.91 SS G_CDS: -1.56 Total: 8.35 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: -0.25 Total: -54.01 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.28 Total: -23.24 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.03 Total: 18.05 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.68 -8.25 -40.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316975737.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.234 kcal (2) G-P(sol) polarization free energy of solvation -32.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds