Wall clock time and date at job start Tue Mar 31 2020 03:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42898 * 113.99577 * 2 1 4 4 C 1.53003 * 109.46563 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47550 * 64.99597 * 4 3 2 6 6 C 1.36936 * 120.00439 * 274.21201 * 5 4 3 7 7 H 1.08002 * 119.99428 * 337.88236 * 6 5 4 8 8 C 1.38814 * 120.00366 * 157.88087 * 6 5 4 9 9 N 1.31615 * 119.99706 * 7.57033 * 8 6 5 10 10 Si 1.86804 * 119.99901 * 187.57191 * 8 6 5 11 11 H 1.48491 * 109.47068 * 89.99802 * 10 8 6 12 12 H 1.48501 * 109.47002 * 210.00264 * 10 8 6 13 13 H 1.48496 * 109.46932 * 329.99654 * 10 8 6 14 14 C 1.46507 * 119.99899 * 94.20587 * 5 4 3 15 15 C 1.50701 * 109.47050 * 270.00296 * 14 5 4 16 16 O 1.21283 * 120.00117 * 0.02562 * 15 14 5 17 17 N 1.34773 * 120.00035 * 179.97438 * 15 14 5 18 18 C 1.46498 * 120.00225 * 179.97438 * 17 15 14 19 19 C 1.50703 * 109.47417 * 180.02562 * 18 17 15 20 20 C 1.38237 * 120.00036 * 89.99986 * 19 18 17 21 21 C 1.38228 * 120.00065 * 179.97438 * 20 19 18 22 22 C 1.38234 * 120.00050 * 359.97438 * 21 20 19 23 23 C 1.38235 * 120.00204 * 0.28351 * 22 21 20 24 24 C 1.38236 * 120.00003 * 269.98411 * 19 18 17 25 25 H 1.09005 * 109.46998 * 300.00459 * 1 2 3 26 26 H 1.08995 * 109.47111 * 59.99802 * 1 2 3 27 27 H 1.08995 * 109.47071 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47493 * 60.00306 * 3 2 1 29 29 H 1.08998 * 109.47328 * 299.99055 * 3 2 1 30 30 H 1.08999 * 109.46993 * 304.99445 * 4 3 2 31 31 H 1.08999 * 109.47423 * 185.00111 * 4 3 2 32 32 H 0.96999 * 119.99619 * 179.97438 * 9 8 6 33 33 H 1.08993 * 109.47101 * 150.00511 * 14 5 4 34 34 H 1.08994 * 109.47377 * 30.00103 * 14 5 4 35 35 H 0.97008 * 120.00060 * 0.02562 * 17 15 14 36 36 H 1.08997 * 109.47229 * 60.00441 * 18 17 15 37 37 H 1.08999 * 109.47403 * 300.00656 * 18 17 15 38 38 H 1.08004 * 119.99712 * 359.97438 * 20 19 18 39 39 H 1.08001 * 120.00179 * 180.02562 * 21 20 19 40 40 H 1.08005 * 120.00160 * 179.97438 * 22 21 20 41 41 H 1.08000 * 120.00446 * 179.72393 * 23 22 21 42 42 H 1.08001 * 119.99747 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2526 6 6 4.0142 -0.7999 -1.3644 7 1 4.0750 -1.4128 -0.4772 8 6 3.9752 -1.3951 -2.6179 9 7 4.0516 -0.6522 -3.7017 10 14 3.8142 -3.2502 -2.7664 11 1 2.3770 -3.6196 -2.8203 12 1 4.4899 -3.7080 -4.0070 13 1 4.4480 -3.8978 -1.5899 14 6 4.3747 1.4036 -2.3852 15 6 3.1713 1.6921 -3.2452 16 8 2.0869 1.2415 -2.9416 17 7 3.2997 2.4517 -4.3510 18 6 2.1299 2.7317 -5.1873 19 6 2.5403 3.5951 -6.3523 20 6 2.9562 3.0099 -7.5337 21 6 3.3321 3.8019 -8.6024 22 6 3.2916 5.1790 -8.4901 23 6 2.8808 5.7643 -7.3071 24 6 2.5005 4.9723 -6.2398 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.6886 1.8464 0.8899 29 1 1.6887 1.8463 -0.8900 30 1 3.8514 0.5683 0.8410 31 1 3.9786 2.1764 0.0889 32 1 4.0247 -1.0681 -4.5776 33 1 5.1272 0.8820 -2.9766 34 1 4.7895 2.3409 -2.0146 35 1 4.1669 2.8125 -4.5937 36 1 1.3769 3.2527 -4.5961 37 1 1.7158 1.7943 -5.5584 38 1 2.9874 1.9339 -7.6215 39 1 3.6566 3.3447 -9.5255 40 1 3.5857 5.7978 -9.3250 41 1 2.8535 6.8403 -7.2178 42 1 2.1750 5.4295 -5.3171 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316975737.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:20 Heat of formation + Delta-G solvation = -40.779899 kcal Electronic energy + Delta-G solvation = -23933.050342 eV Core-core repulsion = 20492.700121 eV Total energy + Delta-G solvation = -3440.350221 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.49016 -39.68987 -38.51803 -36.79044 -35.32969 -33.36325 -32.21748 -31.77193 -30.39257 -28.71468 -27.13200 -26.52786 -24.81171 -23.43453 -22.39959 -22.01986 -20.98913 -18.84982 -17.97077 -17.26909 -17.19643 -17.03462 -16.42457 -16.28593 -16.27880 -15.75385 -15.62742 -15.43186 -14.93292 -14.61928 -14.25899 -14.07291 -13.74020 -13.53415 -13.36904 -13.36004 -12.96740 -12.86159 -12.66569 -12.59562 -12.12118 -11.97467 -11.91923 -11.87327 -11.78459 -11.54669 -10.68765 -10.32348 -10.14625 -9.81534 -9.65469 -9.55732 -8.63614 -7.75654 -5.11592 0.37504 0.51367 1.43743 1.50606 1.53880 2.49690 2.59606 2.77264 3.13830 3.22044 3.50147 3.78605 3.79931 3.97502 4.17870 4.31311 4.42355 4.43109 4.50865 4.57190 4.64777 4.65546 4.69708 4.73714 4.78353 4.80833 4.82757 4.93042 5.09237 5.16051 5.18555 5.37499 5.56084 5.57734 5.62522 5.73656 5.74249 6.00263 6.12206 6.42363 6.63952 7.11260 7.32469 7.92938 8.17033 8.36540 9.27861 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.016512 B = 0.004656 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.347116 B = 6012.443597 C = 6913.911790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.394 6.394 3 C 0.048 3.952 4 C 0.143 3.857 5 N -0.585 5.585 6 C -0.216 4.216 7 H 0.063 0.937 8 C -0.043 4.043 9 N -0.921 5.921 10 Si 0.954 3.046 11 H -0.310 1.310 12 H -0.295 1.295 13 H -0.271 1.271 14 C 0.164 3.836 15 C 0.529 3.471 16 O -0.580 6.580 17 N -0.732 5.732 18 C 0.177 3.823 19 C -0.107 4.107 20 C -0.118 4.118 21 C -0.126 4.126 22 C -0.117 4.117 23 C -0.122 4.122 24 C -0.110 4.110 25 H 0.054 0.946 26 H 0.017 0.983 27 H 0.079 0.921 28 H 0.048 0.952 29 H 0.032 0.968 30 H 0.053 0.947 31 H 0.087 0.913 32 H 0.239 0.761 33 H 0.098 0.902 34 H 0.061 0.939 35 H 0.398 0.602 36 H 0.054 0.946 37 H 0.031 0.969 38 H 0.109 0.891 39 H 0.140 0.860 40 H 0.150 0.850 41 H 0.149 0.851 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.399 14.658 -5.245 15.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.313 6.313 3 C -0.031 4.031 4 C 0.017 3.983 5 N -0.305 5.305 6 C -0.346 4.346 7 H 0.081 0.919 8 C -0.236 4.236 9 N -0.570 5.570 10 Si 0.786 3.214 11 H -0.238 1.238 12 H -0.222 1.222 13 H -0.196 1.196 14 C 0.034 3.966 15 C 0.317 3.683 16 O -0.458 6.458 17 N -0.386 5.386 18 C 0.053 3.947 19 C -0.107 4.107 20 C -0.137 4.137 21 C -0.144 4.144 22 C -0.135 4.135 23 C -0.140 4.140 24 C -0.129 4.129 25 H 0.073 0.927 26 H 0.036 0.964 27 H 0.097 0.903 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.105 0.895 32 H 0.049 0.951 33 H 0.116 0.884 34 H 0.079 0.921 35 H 0.232 0.768 36 H 0.072 0.928 37 H 0.049 0.951 38 H 0.127 0.873 39 H 0.158 0.842 40 H 0.168 0.832 41 H 0.167 0.833 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.031 14.053 -5.096 14.984 hybrid contribution -0.537 -1.244 -0.558 1.465 sum -1.568 12.809 -5.654 14.089 Atomic orbital electron populations 1.22632 0.82091 1.02046 0.99094 1.87986 1.19201 1.28988 1.95090 1.23360 0.97324 0.84220 0.98196 1.21228 0.90504 0.97792 0.88811 1.43906 1.74414 1.02302 1.09853 1.19244 1.40421 0.83028 0.91891 0.91872 1.25371 1.01986 1.00431 0.95819 1.69804 1.57365 1.33363 0.96477 0.85447 0.76289 0.82931 0.76758 1.23836 1.22168 1.19624 1.20757 0.93767 0.93252 0.88794 1.22127 0.91587 0.73792 0.80842 1.90476 1.30652 1.51295 1.73357 1.46040 1.10936 1.54929 1.26714 1.19762 0.89056 0.96273 0.89631 1.19866 1.01681 0.94556 0.94620 1.21193 0.99010 1.00010 0.93497 1.21403 0.99737 0.94491 0.98724 1.21546 0.98651 0.94737 0.98571 1.21472 0.98640 1.01026 0.92812 1.21240 0.99490 0.92303 0.99865 0.92709 0.96399 0.90264 0.93360 0.95003 0.92909 0.89505 0.95092 0.88388 0.92089 0.76765 0.92819 0.95096 0.87261 0.84220 0.83198 0.83291 0.85290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.46 11.01 113.37 1.25 2.71 16 2 O -0.39 -18.62 9.98 -148.98 -1.49 -20.10 16 3 C 0.05 2.00 5.87 71.98 0.42 2.42 16 4 C 0.14 5.89 6.17 86.38 0.53 6.43 16 5 N -0.59 -29.07 2.06 -706.35 -1.46 -30.53 16 6 C -0.22 -12.09 9.00 84.03 0.76 -11.33 16 7 H 0.06 3.59 7.84 -2.91 -0.02 3.56 16 8 C -0.04 -2.44 5.41 84.86 0.46 -1.98 16 9 N -0.92 -52.72 8.21 21.65 0.18 -52.55 16 10 Si 0.95 48.37 29.56 68.60 2.03 50.40 16 11 H -0.31 -16.53 7.11 99.48 0.71 -15.83 16 12 H -0.29 -14.72 7.11 99.48 0.71 -14.01 16 13 H -0.27 -13.07 7.11 99.48 0.71 -12.37 16 14 C 0.16 7.51 5.47 85.63 0.47 7.98 16 15 C 0.53 24.90 5.78 87.66 0.51 25.40 16 16 O -0.58 -32.35 13.75 -3.04 -0.04 -32.40 16 17 N -0.73 -28.01 5.55 -466.79 -2.59 -30.60 16 18 C 0.18 6.32 5.80 85.63 0.50 6.82 16 19 C -0.11 -3.01 5.25 -19.86 -0.10 -3.11 16 20 C -0.12 -3.18 9.70 22.27 0.22 -2.97 16 21 C -0.13 -2.63 10.05 22.27 0.22 -2.40 16 22 C -0.12 -2.04 10.05 22.27 0.22 -1.82 16 23 C -0.12 -2.21 10.05 22.27 0.22 -1.99 16 24 C -0.11 -2.54 9.70 22.27 0.22 -2.32 16 25 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 26 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 28 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.03 1.50 6.03 -2.39 -0.01 1.48 16 30 H 0.05 2.14 8.07 -2.39 -0.02 2.13 16 31 H 0.09 2.93 7.84 -2.39 -0.02 2.91 16 32 H 0.24 13.86 8.31 -92.71 -0.77 13.09 16 33 H 0.10 4.93 6.24 -2.39 -0.01 4.92 16 34 H 0.06 2.30 7.86 -2.39 -0.02 2.28 16 35 H 0.40 13.29 8.46 -92.70 -0.78 12.50 16 36 H 0.05 1.94 8.09 -2.39 -0.02 1.92 16 37 H 0.03 1.29 8.08 -2.39 -0.02 1.27 16 38 H 0.11 3.17 8.06 -2.91 -0.02 3.15 16 39 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 40 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 41 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 42 H 0.13 2.70 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -72.46 349.41 2.74 -69.72 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: 0.22 Total: 22.21 kcal Atomic # 6 Polarization: 17.95 SS G_CDS: 5.89 Total: 23.84 kcal Atomic # 7 Polarization: -109.80 SS G_CDS: -3.87 Total: -113.67 kcal Atomic # 8 Polarization: -50.97 SS G_CDS: -1.53 Total: -52.50 kcal Atomic # 14 Polarization: 48.37 SS G_CDS: 2.03 Total: 50.40 kcal Total: -72.46 2.74 -69.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316975737.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.941 kcal (2) G-P(sol) polarization free energy of solvation -72.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds