Wall clock time and date at job start Tue Mar 31 2020 03:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99866 * 2 1 4 4 H 1.48493 * 109.47374 * 270.00041 * 3 2 1 5 5 H 1.48496 * 109.47349 * 30.00388 * 3 2 1 6 6 H 1.48504 * 109.47003 * 150.00144 * 3 2 1 7 7 C 1.38804 * 119.99787 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99814 * 162.55448 * 7 2 1 9 9 N 1.36935 * 120.00405 * 342.82520 * 7 2 1 10 10 C 1.46962 * 120.59568 * 151.29568 * 9 7 2 11 11 C 1.53815 * 108.39611 * 124.76060 * 10 9 7 12 12 N 1.46958 * 108.58318 * 49.63518 * 11 10 9 13 13 C 1.34783 * 120.59366 * 124.62417 * 12 11 10 14 14 O 1.21282 * 119.99627 * 180.02562 * 13 12 11 15 15 C 1.50696 * 120.00050 * 0.02562 * 13 12 11 16 16 C 1.52996 * 109.47218 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.47297 * 179.97438 * 16 15 13 18 18 N 1.46505 * 109.47155 * 180.02562 * 17 16 15 19 19 C 1.34936 * 126.03992 * 125.00094 * 18 17 16 20 20 C 1.35320 * 107.75162 * 179.97438 * 19 18 17 21 21 C 1.39873 * 107.91199 * 359.97438 * 20 19 18 22 22 N 1.30836 * 108.20719 * 359.74190 * 21 20 19 23 23 C 1.46967 * 118.81111 * 304.64454 * 12 11 10 24 24 C 1.46972 * 120.59045 * 331.57419 * 9 7 2 25 25 H 0.96999 * 119.99847 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.60973 * 244.53779 * 10 9 7 27 27 H 1.08995 * 109.61395 * 5.04923 * 10 9 7 28 28 H 1.09002 * 109.74120 * 289.84419 * 11 10 9 29 29 H 1.09006 * 109.67017 * 169.38761 * 11 10 9 30 30 H 1.09000 * 109.47172 * 299.99774 * 15 13 12 31 31 H 1.09000 * 109.46925 * 59.99612 * 15 13 12 32 32 H 1.09003 * 109.47360 * 300.00129 * 16 15 13 33 33 H 1.09003 * 109.47289 * 59.99479 * 16 15 13 34 34 H 1.09000 * 109.47150 * 299.99827 * 17 16 15 35 35 H 1.08994 * 109.47030 * 60.00044 * 17 16 15 36 36 H 1.08004 * 126.12844 * 359.97438 * 19 18 17 37 37 H 1.07994 * 126.04334 * 179.97438 * 20 19 18 38 38 H 1.08006 * 125.89747 * 179.97438 * 21 20 19 39 39 H 1.08996 * 109.60899 * 295.48089 * 23 12 11 40 40 H 1.09001 * 109.60456 * 174.97067 * 23 12 11 41 41 H 1.09002 * 109.60606 * 354.94337 * 24 9 7 42 42 H 1.08999 * 109.60696 * 115.28811 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0530 -1.2235 -0.2810 9 7 1.3714 -2.3617 0.3491 10 6 1.8065 -3.6517 -0.2045 11 6 2.1101 -4.6040 0.9646 12 7 0.9732 -4.5802 1.8954 13 6 0.3438 -5.7215 2.2389 14 8 -0.5936 -5.6892 3.0077 15 6 0.8049 -7.0375 1.6677 16 6 -0.0713 -8.1660 2.2150 17 6 0.3964 -9.5021 1.6345 18 7 -0.4430 -10.5827 2.1582 19 6 -1.1293 -11.4822 1.4230 20 6 -1.7749 -12.3080 2.2788 21 6 -1.4722 -11.8993 3.5817 22 7 -0.6692 -10.8688 3.5108 23 6 0.5346 -3.2895 2.4448 24 6 0.2343 -2.3379 1.2801 25 1 -0.4850 0.8401 0.0004 26 1 1.0134 -4.0701 -0.8241 27 1 2.7052 -3.5079 -0.8042 28 1 3.0127 -4.2771 1.4809 29 1 2.2518 -5.6163 0.5859 30 1 0.7253 -7.0098 0.5809 31 1 1.8425 -7.2132 1.9516 32 1 0.0087 -8.1937 3.3017 33 1 -1.1090 -7.9905 1.9315 34 1 0.3161 -9.4742 0.5479 35 1 1.4342 -9.6779 1.9177 36 1 -1.1582 -11.5339 0.3446 37 1 -2.4114 -13.1362 2.0043 38 1 -1.8353 -12.3577 4.4897 39 1 1.3249 -2.8690 3.0665 40 1 -0.3663 -3.4332 3.0413 41 1 0.0947 -1.3262 1.6610 42 1 -0.6687 -2.6620 0.7629 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330840633.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:15 Heat of formation + Delta-G solvation = 69.292968 kcal Electronic energy + Delta-G solvation = -22953.265425 eV Core-core repulsion = 19549.981073 eV Total energy + Delta-G solvation = -3403.284352 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.25974 -39.69392 -36.94138 -35.25097 -33.93004 -31.91208 -31.21043 -30.41340 -30.00918 -27.50094 -26.41200 -23.79554 -23.17874 -22.31759 -21.25460 -20.67234 -20.32400 -18.58890 -17.56102 -16.97382 -16.14956 -16.06978 -15.38624 -15.05357 -14.84587 -14.51002 -14.26278 -13.75152 -13.70397 -13.47036 -13.33964 -13.17669 -12.96574 -12.66027 -12.32112 -11.99180 -11.90480 -11.61417 -11.23813 -11.07303 -10.84320 -10.76951 -10.70388 -10.61109 -10.29104 -10.00094 -9.88858 -9.60058 -9.38502 -8.76693 -8.62682 -8.26509 -6.75240 -5.88480 -3.34115 1.74619 2.33485 2.69909 2.95806 3.31623 3.38779 3.39990 3.43074 4.25835 4.40846 4.57598 4.61885 4.76664 4.91201 5.05081 5.08342 5.15037 5.23626 5.29122 5.41338 5.44876 5.58089 5.69078 5.72524 5.82025 5.83808 5.90647 6.11628 6.15751 6.31045 6.35073 6.46460 6.48771 6.64570 6.83045 6.84356 7.22591 7.51418 7.55364 7.68700 7.88912 8.32572 8.54493 9.08152 9.71021 10.27586 11.18956 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.047824 B = 0.002610 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.338110 B =10726.655184 C =10909.630775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.004 3.996 3 Si 0.904 3.096 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.259 4.259 8 H 0.067 0.933 9 N -0.591 5.591 10 C 0.131 3.869 11 C 0.088 3.912 12 N -0.598 5.598 13 C 0.508 3.492 14 O -0.555 6.555 15 C -0.136 4.136 16 C -0.114 4.114 17 C 0.132 3.868 18 N -0.369 5.369 19 C 0.052 3.948 20 C -0.279 4.279 21 C 0.039 3.961 22 N -0.291 5.291 23 C 0.087 3.913 24 C 0.158 3.842 25 H 0.256 0.744 26 H 0.023 0.977 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.173 0.827 37 H 0.145 0.855 38 H 0.181 0.819 39 H 0.060 0.940 40 H 0.080 0.920 41 H 0.099 0.901 42 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.608 -20.771 1.147 20.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.195 4.195 3 Si 0.734 3.266 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.388 4.388 8 H 0.085 0.915 9 N -0.314 5.314 10 C 0.003 3.997 11 C -0.037 4.037 12 N -0.330 5.330 13 C 0.296 3.704 14 O -0.434 6.434 15 C -0.177 4.177 16 C -0.152 4.152 17 C 0.011 3.989 18 N -0.151 5.151 19 C -0.095 4.095 20 C -0.309 4.309 21 C -0.147 4.147 22 N -0.113 5.113 23 C -0.037 4.037 24 C 0.032 3.968 25 H 0.066 0.934 26 H 0.041 0.959 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.115 0.885 35 H 0.104 0.896 36 H 0.190 0.810 37 H 0.163 0.837 38 H 0.198 0.802 39 H 0.078 0.922 40 H 0.098 0.902 41 H 0.117 0.883 42 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 1.777 -19.584 2.132 19.780 hybrid contribution -0.043 0.301 -0.692 0.756 sum 1.734 -19.283 1.440 19.414 Atomic orbital electron populations 1.70021 1.05360 1.25823 1.53227 1.25099 0.95294 0.98634 1.00503 0.86277 0.79169 0.83424 0.77761 1.21314 1.21461 1.20399 1.19165 0.92698 0.84639 1.42302 0.91488 1.44015 1.36570 1.01623 1.49208 1.21364 0.98386 0.87489 0.92455 1.22474 0.88470 1.00269 0.92452 1.48088 1.32574 1.07013 1.45309 1.20441 0.82912 0.85452 0.81640 1.90670 1.28997 1.86959 1.36750 1.21571 1.01203 0.92758 1.02149 1.21572 1.00373 0.90563 1.02740 1.21816 0.93790 0.84701 0.98586 1.48775 1.37680 1.24464 1.04183 1.22598 0.96171 0.92009 0.98681 1.21507 1.10646 1.06407 0.92312 1.23903 0.97146 0.94914 0.98697 1.77396 1.20459 1.18006 0.95408 1.22497 0.99820 0.82897 0.98436 1.21189 0.88977 0.98621 0.88010 0.93403 0.95920 0.91472 0.91561 0.90916 0.88760 0.88854 0.89665 0.90612 0.88476 0.89612 0.81026 0.83698 0.80193 0.92213 0.90172 0.88274 0.95902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.61 11.20 55.49 0.62 -24.99 16 2 C 0.00 0.10 4.91 -17.43 -0.09 0.02 16 3 Si 0.90 21.04 29.59 -169.99 -5.03 16.01 16 4 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.26 -6.79 9.57 -15.06 -0.14 -6.93 16 8 H 0.07 1.71 7.89 -52.49 -0.41 1.29 16 9 N -0.59 -14.19 2.96 -171.76 -0.51 -14.70 16 10 C 0.13 2.48 6.70 -3.37 -0.02 2.46 16 11 C 0.09 1.35 6.52 -3.37 -0.02 1.33 16 12 N -0.60 -10.55 2.95 -172.21 -0.51 -11.06 16 13 C 0.51 8.54 7.70 -10.98 -0.08 8.45 16 14 O -0.55 -11.42 15.39 5.56 0.09 -11.33 16 15 C -0.14 -1.52 4.04 -27.89 -0.11 -1.63 16 16 C -0.11 -1.31 4.69 -26.73 -0.13 -1.44 16 17 C 0.13 1.13 6.51 -4.04 -0.03 1.10 16 18 N -0.37 -3.99 3.68 -61.37 -0.23 -4.22 16 19 C 0.05 0.46 11.45 -17.23 -0.20 0.26 16 20 C -0.28 -2.53 10.80 -40.01 -0.43 -2.96 16 21 C 0.04 0.41 12.02 -17.36 -0.21 0.20 16 22 N -0.29 -3.76 12.42 30.63 0.38 -3.38 16 23 C 0.09 1.75 6.59 -3.59 -0.02 1.73 16 24 C 0.16 3.75 5.51 -3.59 -0.02 3.73 16 25 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 1.20 7.93 -51.93 -0.41 0.79 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.07 0.82 5.91 -51.93 -0.31 0.51 16 30 H 0.09 0.87 7.72 -51.93 -0.40 0.47 16 31 H 0.09 0.84 7.91 -51.93 -0.41 0.43 16 32 H 0.08 1.20 8.10 -51.93 -0.42 0.78 16 33 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 34 H 0.10 0.55 8.07 -51.93 -0.42 0.13 16 35 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.17 0.91 8.06 -52.48 -0.42 0.48 16 37 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.18 1.32 8.06 -52.48 -0.42 0.90 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.08 1.64 6.99 -51.93 -0.36 1.28 16 41 H 0.10 2.60 6.00 -51.93 -0.31 2.29 16 42 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 344.35 15.07 5.19 5.19 Total: -1.00 -33.93 344.35 -7.90 -41.82 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -6.40 Total: 0.33 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: -1.51 Total: 6.31 kcal Atomic # 7 Polarization: -58.10 SS G_CDS: -0.24 Total: -58.34 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.09 Total: -11.33 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.01 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.93 -7.90 -41.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330840633.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.117 kcal (2) G-P(sol) polarization free energy of solvation -33.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds