Wall clock time and date at job start Tue Mar 31 2020 03:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99866 * 2 1 4 4 H 1.48493 * 109.47374 * 270.00041 * 3 2 1 5 5 H 1.48496 * 109.47349 * 30.00388 * 3 2 1 6 6 H 1.48504 * 109.47003 * 150.00144 * 3 2 1 7 7 C 1.38804 * 119.99787 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99814 * 162.55448 * 7 2 1 9 9 N 1.36935 * 120.00405 * 342.82520 * 7 2 1 10 10 C 1.46962 * 120.59568 * 151.29568 * 9 7 2 11 11 C 1.53815 * 108.39611 * 124.76060 * 10 9 7 12 12 N 1.46958 * 108.58318 * 49.63518 * 11 10 9 13 13 C 1.34783 * 120.59366 * 124.62417 * 12 11 10 14 14 O 1.21282 * 119.99627 * 180.02562 * 13 12 11 15 15 C 1.50696 * 120.00050 * 0.02562 * 13 12 11 16 16 C 1.52996 * 109.47218 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.47297 * 179.97438 * 16 15 13 18 18 N 1.46505 * 109.47155 * 180.02562 * 17 16 15 19 19 C 1.34936 * 126.03992 * 125.00094 * 18 17 16 20 20 C 1.35320 * 107.75162 * 179.97438 * 19 18 17 21 21 C 1.39873 * 107.91199 * 359.97438 * 20 19 18 22 22 N 1.30836 * 108.20719 * 359.74190 * 21 20 19 23 23 C 1.46967 * 118.81111 * 304.64454 * 12 11 10 24 24 C 1.46972 * 120.59045 * 331.57419 * 9 7 2 25 25 H 0.96999 * 119.99847 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.60973 * 244.53779 * 10 9 7 27 27 H 1.08995 * 109.61395 * 5.04923 * 10 9 7 28 28 H 1.09002 * 109.74120 * 289.84419 * 11 10 9 29 29 H 1.09006 * 109.67017 * 169.38761 * 11 10 9 30 30 H 1.09000 * 109.47172 * 299.99774 * 15 13 12 31 31 H 1.09000 * 109.46925 * 59.99612 * 15 13 12 32 32 H 1.09003 * 109.47360 * 300.00129 * 16 15 13 33 33 H 1.09003 * 109.47289 * 59.99479 * 16 15 13 34 34 H 1.09000 * 109.47150 * 299.99827 * 17 16 15 35 35 H 1.08994 * 109.47030 * 60.00044 * 17 16 15 36 36 H 1.08004 * 126.12844 * 359.97438 * 19 18 17 37 37 H 1.07994 * 126.04334 * 179.97438 * 20 19 18 38 38 H 1.08006 * 125.89747 * 179.97438 * 21 20 19 39 39 H 1.08996 * 109.60899 * 295.48089 * 23 12 11 40 40 H 1.09001 * 109.60456 * 174.97067 * 23 12 11 41 41 H 1.09002 * 109.60606 * 354.94337 * 24 9 7 42 42 H 1.08999 * 109.60696 * 115.28811 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0530 -1.2235 -0.2810 9 7 1.3714 -2.3617 0.3491 10 6 1.8065 -3.6517 -0.2045 11 6 2.1101 -4.6040 0.9646 12 7 0.9732 -4.5802 1.8954 13 6 0.3438 -5.7215 2.2389 14 8 -0.5936 -5.6892 3.0077 15 6 0.8049 -7.0375 1.6677 16 6 -0.0713 -8.1660 2.2150 17 6 0.3964 -9.5021 1.6345 18 7 -0.4430 -10.5827 2.1582 19 6 -1.1293 -11.4822 1.4230 20 6 -1.7749 -12.3080 2.2788 21 6 -1.4722 -11.8993 3.5817 22 7 -0.6692 -10.8688 3.5108 23 6 0.5346 -3.2895 2.4448 24 6 0.2343 -2.3379 1.2801 25 1 -0.4850 0.8401 0.0004 26 1 1.0134 -4.0701 -0.8241 27 1 2.7052 -3.5079 -0.8042 28 1 3.0127 -4.2771 1.4809 29 1 2.2518 -5.6163 0.5859 30 1 0.7253 -7.0098 0.5809 31 1 1.8425 -7.2132 1.9516 32 1 0.0087 -8.1937 3.3017 33 1 -1.1090 -7.9905 1.9315 34 1 0.3161 -9.4742 0.5479 35 1 1.4342 -9.6779 1.9177 36 1 -1.1582 -11.5339 0.3446 37 1 -2.4114 -13.1362 2.0043 38 1 -1.8353 -12.3577 4.4897 39 1 1.3249 -2.8690 3.0665 40 1 -0.3663 -3.4332 3.0413 41 1 0.0947 -1.3262 1.6610 42 1 -0.6687 -2.6620 0.7629 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330840633.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:14 Heat of formation + Delta-G solvation = 46.986582 kcal Electronic energy + Delta-G solvation = -22954.232702 eV Core-core repulsion = 19549.981073 eV Total energy + Delta-G solvation = -3404.251629 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.95684 -41.07307 -38.52412 -36.12014 -35.64437 -33.12285 -32.82552 -31.78282 -30.82784 -28.92221 -27.62371 -25.45795 -24.56802 -23.52527 -22.05717 -21.82565 -21.32728 -20.03468 -18.82972 -18.11566 -17.62677 -17.03886 -16.77069 -16.66830 -16.04536 -15.53173 -15.47221 -15.20681 -15.11162 -14.94704 -14.58129 -14.37903 -13.95458 -13.58084 -13.44771 -13.27428 -13.05483 -12.84404 -12.75987 -12.54516 -12.46994 -12.28762 -12.01217 -11.91400 -11.85674 -11.68222 -11.45380 -10.80545 -10.61522 -10.33767 -9.81738 -9.45731 -8.66731 -7.89655 -5.38334 1.05568 1.46594 1.49403 1.58263 1.65917 1.69579 2.00736 2.10528 2.50451 3.25653 3.45350 3.60383 3.68822 3.90625 4.10374 4.15645 4.19917 4.25623 4.34031 4.39763 4.41599 4.50288 4.55043 4.61617 4.67803 4.76797 4.80823 4.93047 4.94030 5.05327 5.06728 5.19730 5.25394 5.26547 5.44923 5.60346 5.67611 5.80508 6.23767 6.34474 6.55266 6.83671 7.08206 7.21085 7.78724 8.31664 9.15636 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.047824 B = 0.002610 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.338110 B =10726.655184 C =10909.630775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.054 4.054 3 Si 0.969 3.031 4 H -0.284 1.284 5 H -0.297 1.297 6 H -0.267 1.267 7 C -0.261 4.261 8 H 0.077 0.923 9 N -0.610 5.610 10 C 0.123 3.877 11 C 0.097 3.903 12 N -0.604 5.604 13 C 0.500 3.500 14 O -0.601 6.601 15 C -0.123 4.123 16 C -0.104 4.104 17 C 0.133 3.867 18 N -0.381 5.381 19 C 0.053 3.947 20 C -0.292 4.292 21 C 0.028 3.972 22 N -0.345 5.345 23 C 0.101 3.899 24 C 0.171 3.829 25 H 0.250 0.750 26 H 0.019 0.981 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.130 0.870 32 H 0.050 0.950 33 H 0.048 0.952 34 H 0.136 0.864 35 H 0.101 0.899 36 H 0.210 0.790 37 H 0.167 0.833 38 H 0.198 0.802 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.066 0.934 42 H -0.009 1.009 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.885 -23.079 -0.389 23.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.249 4.249 3 Si 0.797 3.203 4 H -0.210 1.210 5 H -0.224 1.224 6 H -0.192 1.192 7 C -0.391 4.391 8 H 0.095 0.905 9 N -0.334 5.334 10 C -0.003 4.003 11 C -0.026 4.026 12 N -0.336 5.336 13 C 0.291 3.709 14 O -0.483 6.483 15 C -0.163 4.163 16 C -0.143 4.143 17 C 0.013 3.987 18 N -0.163 5.163 19 C -0.093 4.093 20 C -0.321 4.321 21 C -0.157 4.157 22 N -0.167 5.167 23 C -0.023 4.023 24 C 0.044 3.956 25 H 0.059 0.941 26 H 0.037 0.963 27 H 0.100 0.900 28 H 0.092 0.908 29 H 0.146 0.854 30 H 0.146 0.854 31 H 0.148 0.852 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.154 0.846 35 H 0.120 0.880 36 H 0.227 0.773 37 H 0.184 0.816 38 H 0.215 0.785 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.009 0.991 Dipole moment (debyes) X Y Z Total from point charges 4.100 -21.939 0.583 22.327 hybrid contribution -0.796 0.945 -0.236 1.258 sum 3.304 -20.994 0.347 21.255 Atomic orbital electron populations 1.70185 1.06937 1.25986 1.55347 1.25877 0.95950 1.01854 1.01197 0.85262 0.78107 0.79386 0.77585 1.21037 1.22405 1.19176 1.19567 0.93220 0.85624 1.40649 0.90507 1.44280 1.36252 1.03084 1.49773 1.21626 0.98635 0.85874 0.94146 1.22544 0.87421 1.02253 0.90366 1.48202 1.33406 1.06160 1.45802 1.21535 0.81807 0.86886 0.80709 1.90657 1.31096 1.87725 1.38864 1.21623 1.02603 0.88483 1.03585 1.21400 0.99188 0.92883 1.00818 1.21980 0.94080 0.82238 1.00424 1.48987 1.38340 1.25282 1.03740 1.23278 0.94742 0.90899 1.00353 1.21889 1.11131 1.07292 0.91788 1.24381 0.96578 0.94435 1.00316 1.77325 1.22415 1.19637 0.97361 1.22040 0.99566 0.84014 0.96726 1.20843 0.88220 0.97625 0.88896 0.94117 0.96327 0.89968 0.90812 0.85388 0.85370 0.85229 0.93097 0.93345 0.84625 0.88040 0.77311 0.81590 0.78506 0.91881 0.91362 0.91553 0.99116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.26 11.20 21.65 0.24 -55.01 16 2 C -0.05 -2.92 4.91 84.86 0.42 -2.50 16 3 Si 0.97 43.70 29.59 68.60 2.03 45.73 16 4 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.30 -13.71 7.11 99.48 0.71 -13.00 16 6 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 7 C -0.26 -13.60 9.57 84.03 0.80 -12.80 16 8 H 0.08 3.79 7.89 -2.91 -0.02 3.77 16 9 N -0.61 -29.18 2.96 -697.33 -2.06 -31.24 16 10 C 0.12 4.38 6.70 86.57 0.58 4.96 16 11 C 0.10 2.60 6.52 86.57 0.56 3.16 16 12 N -0.60 -20.31 2.95 -817.14 -2.41 -22.72 16 13 C 0.50 16.04 7.70 87.65 0.67 16.72 16 14 O -0.60 -25.17 15.39 -3.04 -0.05 -25.22 16 15 C -0.12 -2.26 4.04 29.85 0.12 -2.14 16 16 C -0.10 -2.21 4.69 30.59 0.14 -2.07 16 17 C 0.13 1.81 6.51 86.38 0.56 2.37 16 18 N -0.38 -7.48 3.68 -348.07 -1.28 -8.76 16 19 C 0.05 0.80 11.45 83.54 0.96 1.75 16 20 C -0.29 -4.73 10.80 21.99 0.24 -4.50 16 21 C 0.03 0.57 12.02 85.24 1.02 1.59 16 22 N -0.35 -8.81 12.42 -57.02 -0.71 -9.51 16 23 C 0.10 4.15 6.59 86.42 0.57 4.72 16 24 C 0.17 8.40 5.51 86.41 0.48 8.88 16 25 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 26 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.08 2.67 7.93 -2.39 -0.02 2.65 16 28 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.13 2.04 5.91 -2.38 -0.01 2.02 16 30 H 0.13 1.60 7.72 -2.39 -0.02 1.58 16 31 H 0.13 1.56 7.91 -2.39 -0.02 1.54 16 32 H 0.05 1.43 8.10 -2.39 -0.02 1.41 16 33 H 0.05 1.28 8.10 -2.39 -0.02 1.26 16 34 H 0.14 0.80 8.07 -2.39 -0.02 0.78 16 35 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.21 1.28 8.06 -2.91 -0.02 1.26 16 37 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 38 H 0.20 2.84 8.06 -2.91 -0.02 2.82 16 39 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 40 H 0.07 2.93 6.99 -2.39 -0.02 2.92 16 41 H 0.07 3.68 6.00 -2.39 -0.01 3.66 16 42 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 Total: -1.00 -79.44 344.35 3.90 -75.54 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: 1.00 Total: 11.05 kcal Atomic # 6 Polarization: 13.02 SS G_CDS: 7.13 Total: 20.15 kcal Atomic # 7 Polarization: -121.03 SS G_CDS: -6.22 Total: -127.25 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -0.05 Total: -25.22 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -79.44 3.90 -75.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330840633.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.525 kcal (2) G-P(sol) polarization free energy of solvation -79.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds