Wall clock time and date at job start Tue Mar 31 2020 04:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35360 * 126.38720 * 2 1 4 4 C 1.41503 * 105.50243 * 180.02562 * 3 2 1 5 5 C 1.47708 * 126.51567 * 179.97438 * 4 3 2 6 6 O 1.21563 * 120.00448 * 0.02562 * 5 4 3 7 7 N 1.34781 * 119.99497 * 180.02562 * 5 4 3 8 8 C 1.46505 * 119.99592 * 179.72223 * 7 5 4 9 9 C 1.52998 * 109.46929 * 180.27145 * 8 7 5 10 10 C 1.53044 * 109.46603 * 295.03064 * 9 8 7 11 11 C 1.53189 * 109.31507 * 178.59866 * 10 9 8 12 12 N 1.46924 * 108.76511 * 54.65520 * 11 10 9 13 13 C 1.36940 * 120.63304 * 126.35801 * 12 11 10 14 14 H 1.08006 * 119.99529 * 331.86374 * 13 12 11 15 15 C 1.38807 * 120.00038 * 151.86250 * 13 12 11 16 16 N 1.31611 * 120.00453 * 343.06570 * 15 13 12 17 17 Si 1.86806 * 120.00009 * 163.07030 * 15 13 12 18 18 H 1.48501 * 109.47167 * 89.99832 * 17 15 13 19 19 H 1.48497 * 109.47294 * 209.99985 * 17 15 13 20 20 H 1.48502 * 109.46930 * 330.00055 * 17 15 13 21 21 C 1.46925 * 118.74173 * 306.38735 * 12 11 10 22 22 C 1.53045 * 109.46200 * 174.97312 * 9 8 7 23 23 N 1.31813 * 106.96296 * 0.26216 * 4 3 2 24 24 N 1.28466 * 110.07002 * 359.55642 * 23 4 3 25 25 H 0.97003 * 124.88048 * 180.21012 * 24 23 4 26 26 H 1.09003 * 109.46741 * 89.99958 * 1 2 3 27 27 H 1.08991 * 109.47511 * 210.00572 * 1 2 3 28 28 H 1.09002 * 109.46800 * 330.00762 * 1 2 3 29 29 H 1.07997 * 127.24783 * 0.02562 * 3 2 1 30 30 H 0.96999 * 120.00738 * 359.97438 * 7 5 4 31 31 H 1.08992 * 109.47270 * 300.27506 * 8 7 5 32 32 H 1.09000 * 109.46868 * 60.27763 * 8 7 5 33 33 H 1.09006 * 109.46170 * 55.00712 * 9 8 7 34 34 H 1.09000 * 109.49601 * 298.56747 * 10 9 8 35 35 H 1.08997 * 109.49569 * 58.65886 * 10 9 8 36 36 H 1.08993 * 109.59879 * 294.86944 * 11 10 9 37 37 H 1.08999 * 109.70001 * 174.49987 * 11 10 9 38 38 H 0.96996 * 120.00735 * 180.02562 * 16 15 13 39 39 H 1.09005 * 109.58363 * 293.82055 * 21 12 11 40 40 H 1.08997 * 109.70751 * 173.46889 * 21 12 11 41 41 H 1.08998 * 109.49555 * 301.34463 * 22 9 8 42 42 H 1.09000 * 109.49637 * 61.43419 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0897 0.0000 4 6 3.6321 0.5852 -0.0006 5 6 4.8765 1.3810 -0.0014 6 8 4.8214 2.5954 -0.0011 7 7 6.0730 0.7607 -0.0024 8 6 7.3073 1.5499 -0.0093 9 6 8.5140 0.6094 -0.0159 10 6 8.5482 -0.1855 1.2914 11 6 9.7373 -1.1510 1.2664 12 7 10.9616 -0.3859 0.9935 13 6 12.0438 -0.4802 1.8273 14 1 11.9017 -0.7149 2.8720 15 6 13.3232 -0.2742 1.3300 16 7 13.5404 -0.3202 0.0327 17 14 14.7371 0.0680 2.5020 18 1 15.3683 -1.2146 2.9040 19 1 15.7441 0.9248 1.8260 20 1 14.2227 0.7659 3.7076 21 6 11.0027 0.4829 -0.1907 22 6 9.7991 1.4297 -0.1496 23 7 3.5420 -0.7298 -0.0067 24 7 2.3080 -1.0871 -0.0005 25 1 1.9965 -2.0058 -0.0003 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8898 0.5139 28 1 -0.3633 0.8901 0.5137 29 1 2.0058 2.1259 0.0004 30 1 6.1171 -0.2083 -0.0023 31 1 7.3316 2.1785 -0.8994 32 1 7.3415 2.1786 0.8805 33 1 8.4335 -0.0788 -0.8574 34 1 8.6540 0.5006 2.1317 35 1 7.6227 -0.7513 1.3974 36 1 9.5886 -1.8940 0.4830 37 1 9.8258 -1.6500 2.2314 38 1 14.4345 -0.1766 -0.3148 39 1 10.9571 -0.1270 -1.0930 40 1 11.9249 1.0638 -0.1886 41 1 9.7640 2.0137 -1.0693 42 1 9.8930 2.1005 0.7044 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330883809.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:03:49 Heat of formation + Delta-G solvation = 43.737765 kcal Electronic energy + Delta-G solvation = -22888.528833 eV Core-core repulsion = 19484.136325 eV Total energy + Delta-G solvation = -3404.392509 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.92710 -39.42144 -37.70866 -34.90400 -33.25350 -32.68822 -32.05820 -30.70229 -29.67172 -27.54247 -26.88048 -24.59191 -23.26906 -22.11371 -21.52616 -20.94456 -20.03938 -19.00582 -17.95494 -17.04955 -16.60557 -16.15112 -15.65503 -14.99293 -14.76871 -14.15678 -14.06327 -13.89752 -13.54567 -13.48769 -13.42876 -13.30188 -13.06490 -12.67475 -12.31009 -12.26100 -11.82226 -11.28546 -11.12619 -10.96126 -10.67829 -10.45821 -10.26167 -10.17673 -10.12511 -9.85442 -9.65696 -9.49944 -9.39706 -9.24697 -8.90013 -8.43316 -6.62464 -5.75487 -3.17507 1.39516 1.83890 2.54291 3.25857 3.39412 3.39713 3.46763 3.49554 4.24802 4.32660 4.52923 4.62596 5.01156 5.10397 5.23123 5.29924 5.31593 5.38289 5.43410 5.46597 5.61249 5.65740 5.92960 5.99379 6.09442 6.13088 6.20531 6.37971 6.49271 6.53353 6.65107 6.67106 6.74985 6.82286 6.86851 7.03656 7.40615 7.45392 7.70025 7.72031 7.82958 8.24964 8.49176 9.25386 9.89121 10.46072 11.33105 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.040761 B = 0.002687 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.763286 B =10419.932565 C =10721.797286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.010 3.990 3 C -0.179 4.179 4 C -0.007 4.007 5 C 0.599 3.401 6 O -0.537 6.537 7 N -0.710 5.710 8 C 0.123 3.877 9 C -0.090 4.090 10 C -0.128 4.128 11 C 0.146 3.854 12 N -0.593 5.593 13 C -0.251 4.251 14 H 0.064 0.936 15 C 0.001 3.999 16 N -0.903 5.903 17 Si 0.901 3.099 18 H -0.288 1.288 19 H -0.290 1.290 20 H -0.280 1.280 21 C 0.172 3.828 22 C -0.133 4.133 23 N -0.257 5.257 24 N -0.381 5.381 25 H 0.444 0.556 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.162 0.838 30 H 0.407 0.593 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.048 0.952 36 H 0.016 0.984 37 H 0.052 0.948 38 H 0.253 0.747 39 H 0.017 0.983 40 H 0.088 0.912 41 H 0.051 0.949 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.251 -0.914 -1.628 25.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.116 4.116 3 C -0.207 4.207 4 C -0.168 4.168 5 C 0.383 3.617 6 O -0.412 6.412 7 N -0.361 5.361 8 C 0.000 4.000 9 C -0.109 4.109 10 C -0.167 4.167 11 C 0.019 3.981 12 N -0.315 5.315 13 C -0.380 4.380 14 H 0.082 0.918 15 C -0.197 4.197 16 N -0.548 5.548 17 Si 0.731 3.269 18 H -0.215 1.215 19 H -0.216 1.216 20 H -0.205 1.205 21 C 0.046 3.954 22 C -0.172 4.172 23 N -0.093 5.093 24 N -0.096 5.096 25 H 0.289 0.711 26 H 0.098 0.902 27 H 0.089 0.911 28 H 0.105 0.895 29 H 0.180 0.820 30 H 0.242 0.758 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.034 0.966 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.035 0.965 40 H 0.106 0.894 41 H 0.070 0.930 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -24.406 -0.923 -1.708 24.483 hybrid contribution 0.138 -0.168 0.510 0.555 sum -24.268 -1.091 -1.198 24.322 Atomic orbital electron populations 1.20353 0.86493 1.04024 1.03412 1.21472 0.95438 0.87193 1.07484 1.21537 0.90474 0.99785 1.08864 1.22026 0.95398 0.89707 1.09705 1.16893 0.81748 0.86399 0.76692 1.90788 1.86872 1.12912 1.50653 1.45967 1.05364 1.11116 1.73674 1.21642 0.82131 0.94135 1.02123 1.21314 0.93683 0.97029 0.98873 1.22076 0.98642 0.99197 0.96776 1.20884 0.86687 0.92117 0.98389 1.44051 1.11182 1.47803 1.28508 1.19170 0.84578 1.44019 0.90270 0.91817 1.25037 0.97350 1.01635 0.95706 1.70023 1.20779 1.52939 1.11071 0.86320 0.82255 0.77944 0.80400 1.21457 1.21568 1.20507 1.20757 0.95292 0.91038 0.88323 1.22178 0.95712 0.98900 1.00442 1.73575 1.01548 1.15102 1.19100 1.43316 1.02966 1.09572 1.53759 0.71134 0.90242 0.91078 0.89450 0.82005 0.75787 0.91546 0.91361 0.91265 0.92156 0.93381 0.96613 0.92927 0.93671 0.96475 0.89419 0.93026 0.92351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.30 10.44 36.01 0.38 0.08 16 2 C 0.01 0.07 7.23 -82.21 -0.59 -0.52 16 3 C -0.18 -1.91 10.73 -39.36 -0.42 -2.33 16 4 C -0.01 -0.09 7.13 -82.76 -0.59 -0.68 16 5 C 0.60 9.09 7.82 -12.39 -0.10 9.00 16 6 O -0.54 -9.67 16.93 5.31 0.09 -9.58 16 7 N -0.71 -10.01 5.27 -61.29 -0.32 -10.33 16 8 C 0.12 1.85 5.06 -4.04 -0.02 1.83 16 9 C -0.09 -1.48 2.19 -90.57 -0.20 -1.68 16 10 C -0.13 -2.20 5.25 -26.61 -0.14 -2.34 16 11 C 0.15 3.05 6.52 -3.71 -0.02 3.03 16 12 N -0.59 -14.91 2.99 -172.33 -0.52 -15.43 16 13 C -0.25 -6.94 9.58 -15.06 -0.14 -7.09 16 14 H 0.06 1.74 7.89 -52.48 -0.41 1.32 16 15 C 0.00 0.03 4.92 -17.44 -0.09 -0.06 16 16 N -0.90 -26.40 11.19 55.49 0.62 -25.78 16 17 Si 0.90 21.87 29.59 -169.99 -5.03 16.84 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 C 0.17 4.09 5.30 -3.71 -0.02 4.07 16 22 C -0.13 -2.51 5.36 -26.61 -0.14 -2.65 16 23 N -0.26 -2.91 11.92 33.42 0.40 -2.51 16 24 N -0.38 -2.96 6.83 33.50 0.23 -2.73 16 25 H 0.44 1.76 8.96 -190.44 -1.71 0.05 16 26 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 27 H 0.07 0.14 8.14 -51.93 -0.42 -0.28 16 28 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.16 1.58 8.06 -52.49 -0.42 1.16 16 30 H 0.41 5.25 7.38 -40.82 -0.30 4.95 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.05 0.71 7.15 -51.93 -0.37 0.34 16 36 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16 38 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.09 2.35 6.06 -51.93 -0.31 2.03 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 344.87 15.07 5.20 5.20 Total: -1.00 -33.59 344.87 -9.16 -42.75 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -7.73 Total: 0.91 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: -2.10 Total: 0.66 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: 0.41 Total: -56.78 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.09 Total: -9.58 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.84 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.59 -9.16 -42.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330883809.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.488 kcal (2) G-P(sol) polarization free energy of solvation -33.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds