Wall clock time and date at job start Tue Mar 31 2020 04:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35360 * 126.38720 * 2 1 4 4 C 1.41503 * 105.50243 * 180.02562 * 3 2 1 5 5 C 1.47708 * 126.51567 * 179.97438 * 4 3 2 6 6 O 1.21563 * 120.00448 * 0.02562 * 5 4 3 7 7 N 1.34781 * 119.99497 * 180.02562 * 5 4 3 8 8 C 1.46505 * 119.99592 * 179.72223 * 7 5 4 9 9 C 1.52998 * 109.46929 * 180.27145 * 8 7 5 10 10 C 1.53044 * 109.46603 * 295.03064 * 9 8 7 11 11 C 1.53189 * 109.31507 * 178.59866 * 10 9 8 12 12 N 1.46924 * 108.76511 * 54.65520 * 11 10 9 13 13 C 1.36940 * 120.63304 * 126.35801 * 12 11 10 14 14 H 1.08006 * 119.99529 * 331.86374 * 13 12 11 15 15 C 1.38807 * 120.00038 * 151.86250 * 13 12 11 16 16 N 1.31611 * 120.00453 * 343.06570 * 15 13 12 17 17 Si 1.86806 * 120.00009 * 163.07030 * 15 13 12 18 18 H 1.48501 * 109.47167 * 89.99832 * 17 15 13 19 19 H 1.48497 * 109.47294 * 209.99985 * 17 15 13 20 20 H 1.48502 * 109.46930 * 330.00055 * 17 15 13 21 21 C 1.46925 * 118.74173 * 306.38735 * 12 11 10 22 22 C 1.53045 * 109.46200 * 174.97312 * 9 8 7 23 23 N 1.31813 * 106.96296 * 0.26216 * 4 3 2 24 24 N 1.28466 * 110.07002 * 359.55642 * 23 4 3 25 25 H 0.97003 * 124.88048 * 180.21012 * 24 23 4 26 26 H 1.09003 * 109.46741 * 89.99958 * 1 2 3 27 27 H 1.08991 * 109.47511 * 210.00572 * 1 2 3 28 28 H 1.09002 * 109.46800 * 330.00762 * 1 2 3 29 29 H 1.07997 * 127.24783 * 0.02562 * 3 2 1 30 30 H 0.96999 * 120.00738 * 359.97438 * 7 5 4 31 31 H 1.08992 * 109.47270 * 300.27506 * 8 7 5 32 32 H 1.09000 * 109.46868 * 60.27763 * 8 7 5 33 33 H 1.09006 * 109.46170 * 55.00712 * 9 8 7 34 34 H 1.09000 * 109.49601 * 298.56747 * 10 9 8 35 35 H 1.08997 * 109.49569 * 58.65886 * 10 9 8 36 36 H 1.08993 * 109.59879 * 294.86944 * 11 10 9 37 37 H 1.08999 * 109.70001 * 174.49987 * 11 10 9 38 38 H 0.96996 * 120.00735 * 180.02562 * 16 15 13 39 39 H 1.09005 * 109.58363 * 293.82055 * 21 12 11 40 40 H 1.08997 * 109.70751 * 173.46889 * 21 12 11 41 41 H 1.08998 * 109.49555 * 301.34463 * 22 9 8 42 42 H 1.09000 * 109.49637 * 61.43419 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0897 0.0000 4 6 3.6321 0.5852 -0.0006 5 6 4.8765 1.3810 -0.0014 6 8 4.8214 2.5954 -0.0011 7 7 6.0730 0.7607 -0.0024 8 6 7.3073 1.5499 -0.0093 9 6 8.5140 0.6094 -0.0159 10 6 8.5482 -0.1855 1.2914 11 6 9.7373 -1.1510 1.2664 12 7 10.9616 -0.3859 0.9935 13 6 12.0438 -0.4802 1.8273 14 1 11.9017 -0.7149 2.8720 15 6 13.3232 -0.2742 1.3300 16 7 13.5404 -0.3202 0.0327 17 14 14.7371 0.0680 2.5020 18 1 15.3683 -1.2146 2.9040 19 1 15.7441 0.9248 1.8260 20 1 14.2227 0.7659 3.7076 21 6 11.0027 0.4829 -0.1907 22 6 9.7991 1.4297 -0.1496 23 7 3.5420 -0.7298 -0.0067 24 7 2.3080 -1.0871 -0.0005 25 1 1.9965 -2.0058 -0.0003 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8898 0.5139 28 1 -0.3633 0.8901 0.5137 29 1 2.0058 2.1259 0.0004 30 1 6.1171 -0.2083 -0.0023 31 1 7.3316 2.1785 -0.8994 32 1 7.3415 2.1786 0.8805 33 1 8.4335 -0.0788 -0.8574 34 1 8.6540 0.5006 2.1317 35 1 7.6227 -0.7513 1.3974 36 1 9.5886 -1.8940 0.4830 37 1 9.8258 -1.6500 2.2314 38 1 14.4345 -0.1766 -0.3148 39 1 10.9571 -0.1270 -1.0930 40 1 11.9249 1.0638 -0.1886 41 1 9.7640 2.0137 -1.0693 42 1 9.8930 2.1005 0.7044 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330883809.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:03:48 Heat of formation + Delta-G solvation = 20.291328 kcal Electronic energy + Delta-G solvation = -22889.545547 eV Core-core repulsion = 19484.136325 eV Total energy + Delta-G solvation = -3405.409222 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.66833 -40.64367 -39.28417 -36.42545 -34.57387 -33.63731 -32.96485 -32.37560 -31.38923 -28.68332 -27.82118 -26.17724 -24.62082 -23.74211 -22.53738 -22.20823 -21.22039 -20.55976 -18.72394 -18.61198 -17.92315 -16.97709 -16.93640 -16.72082 -16.09203 -15.69394 -15.30296 -15.15398 -14.91381 -14.78233 -14.69799 -14.13574 -13.93121 -13.83548 -13.70106 -13.41163 -13.07625 -12.99469 -12.82234 -12.55378 -12.26907 -12.01999 -11.89670 -11.83913 -11.64116 -11.42073 -11.13071 -11.07576 -10.52850 -10.50404 -10.06181 -9.91602 -8.66084 -7.86645 -5.31568 0.49124 1.12409 1.46078 1.48033 1.57694 1.87332 2.26223 2.33942 2.51874 3.27833 3.38665 3.71319 3.80833 3.83901 3.93549 4.06484 4.11552 4.47261 4.51740 4.54338 4.61586 4.68387 4.74206 4.81881 4.82168 4.94347 5.01428 5.04505 5.13370 5.14273 5.28130 5.29043 5.33476 5.37901 5.43951 5.55501 5.66534 5.79508 6.11591 6.40664 6.44743 6.86501 7.13185 7.16480 7.88501 8.39748 9.19694 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.040761 B = 0.002687 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.763286 B =10419.932565 C =10721.797286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.033 3.967 3 C -0.206 4.206 4 C -0.037 4.037 5 C 0.598 3.402 6 O -0.573 6.573 7 N -0.703 5.703 8 C 0.135 3.865 9 C -0.078 4.078 10 C -0.114 4.114 11 C 0.141 3.859 12 N -0.612 5.612 13 C -0.262 4.262 14 H 0.064 0.936 15 C -0.052 4.052 16 N -0.935 5.935 17 Si 0.966 3.034 18 H -0.284 1.284 19 H -0.292 1.292 20 H -0.272 1.272 21 C 0.177 3.823 22 C -0.121 4.121 23 N -0.270 5.270 24 N -0.365 5.365 25 H 0.462 0.538 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.162 0.838 30 H 0.414 0.586 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.052 0.948 35 H 0.078 0.922 36 H 0.017 0.983 37 H 0.051 0.949 38 H 0.250 0.750 39 H -0.002 1.002 40 H 0.053 0.947 41 H 0.071 0.929 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.908 -1.634 -1.110 27.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.093 4.093 3 C -0.234 4.234 4 C -0.196 4.196 5 C 0.383 3.617 6 O -0.451 6.451 7 N -0.354 5.354 8 C 0.011 3.989 9 C -0.097 4.097 10 C -0.153 4.153 11 C 0.016 3.984 12 N -0.336 5.336 13 C -0.393 4.393 14 H 0.082 0.918 15 C -0.247 4.247 16 N -0.581 5.581 17 Si 0.794 3.206 18 H -0.211 1.211 19 H -0.218 1.218 20 H -0.197 1.197 21 C 0.051 3.949 22 C -0.161 4.161 23 N -0.107 5.107 24 N -0.082 5.082 25 H 0.310 0.690 26 H 0.112 0.888 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.180 0.820 30 H 0.251 0.749 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.096 0.904 36 H 0.035 0.965 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.016 0.984 40 H 0.071 0.929 41 H 0.090 0.910 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -27.093 -1.687 -1.178 27.171 hybrid contribution 0.858 -0.045 0.337 0.923 sum -26.235 -1.733 -0.842 26.306 Atomic orbital electron populations 1.20545 0.83189 1.05595 1.04815 1.21975 0.97070 0.85931 1.04352 1.21735 0.90213 1.00918 1.10578 1.21804 0.95137 0.90447 1.12231 1.17208 0.82525 0.86183 0.75750 1.90757 1.87471 1.14481 1.52417 1.45854 1.04868 1.11340 1.73382 1.21384 0.81881 0.93618 1.01992 1.21148 0.92998 0.96851 0.98702 1.21920 0.98128 0.98482 0.96814 1.21047 0.86423 0.92725 0.98234 1.44333 1.11917 1.48902 1.28414 1.19492 0.85659 1.43334 0.90767 0.91824 1.25788 0.99710 1.02062 0.97147 1.70172 1.20957 1.54267 1.12700 0.85307 0.79123 0.77641 0.78559 1.21074 1.21824 1.19704 1.20573 0.95955 0.91028 0.87296 1.21979 0.94790 0.98048 1.01266 1.73488 1.03311 1.14298 1.19641 1.43435 1.02095 1.10741 1.51957 0.68995 0.88762 0.88724 0.88689 0.82004 0.74942 0.91331 0.91981 0.90701 0.92922 0.90357 0.96544 0.93017 0.94111 0.98389 0.92894 0.91041 0.92900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.28 10.44 71.24 0.74 0.46 16 2 C 0.03 0.42 7.23 41.40 0.30 0.72 16 3 C -0.21 -4.16 10.73 22.41 0.24 -3.92 16 4 C -0.04 -0.92 7.13 42.46 0.30 -0.61 16 5 C 0.60 17.88 7.82 86.75 0.68 18.55 16 6 O -0.57 -20.73 16.93 -3.91 -0.07 -20.80 16 7 N -0.70 -18.96 5.27 -466.10 -2.46 -21.42 16 8 C 0.13 3.89 5.06 86.38 0.44 4.33 16 9 C -0.08 -2.47 2.19 -10.76 -0.02 -2.49 16 10 C -0.11 -3.77 5.25 30.67 0.16 -3.61 16 11 C 0.14 5.83 6.52 86.36 0.56 6.39 16 12 N -0.61 -31.17 2.99 -699.12 -2.09 -33.26 16 13 C -0.26 -14.70 9.58 84.03 0.81 -13.89 16 14 H 0.06 3.49 7.89 -2.91 -0.02 3.47 16 15 C -0.05 -2.94 4.92 84.86 0.42 -2.53 16 16 N -0.93 -56.06 11.19 21.65 0.24 -55.82 16 17 Si 0.97 45.60 29.59 68.60 2.03 47.63 16 18 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 19 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 20 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 21 C 0.18 8.63 5.30 86.36 0.46 9.09 16 22 C -0.12 -4.54 5.36 30.67 0.16 -4.38 16 23 N -0.27 -5.63 11.92 -48.17 -0.57 -6.20 16 24 N -0.36 -4.67 6.83 -47.93 -0.33 -5.00 16 25 H 0.46 2.14 8.96 -219.99 -1.97 0.17 16 26 H 0.09 0.13 8.14 -2.39 -0.02 0.12 16 27 H 0.09 -0.07 8.14 -2.39 -0.02 -0.09 16 28 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 29 H 0.16 3.11 8.06 -2.91 -0.02 3.09 16 30 H 0.41 9.94 7.38 -92.71 -0.68 9.25 16 31 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 34 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.08 2.13 7.15 -2.39 -0.02 2.11 16 36 H 0.02 0.68 8.14 -2.39 -0.02 0.67 16 37 H 0.05 2.11 7.93 -2.39 -0.02 2.09 16 38 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 39 H 0.00 -0.10 8.14 -2.38 -0.02 -0.12 16 40 H 0.05 2.93 6.06 -2.39 -0.01 2.92 16 41 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 42 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -74.36 344.87 0.39 -73.97 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -1.62 Total: 12.79 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: 5.25 Total: 8.11 kcal Atomic # 7 Polarization: -116.49 SS G_CDS: -5.21 Total: -121.70 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.07 Total: -20.80 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -74.36 0.39 -73.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330883809.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.260 kcal (2) G-P(sol) polarization free energy of solvation -74.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds