Wall clock time and date at job start Tue Mar 31 2020 02:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50702 * 109.47016 * 2 1 4 4 C 1.38237 * 119.99807 * 89.99950 * 3 2 1 5 5 C 1.38231 * 120.00152 * 179.97438 * 4 3 2 6 6 C 1.38234 * 119.99689 * 359.96359 * 5 4 3 7 7 C 1.50699 * 119.99968 * 180.02562 * 6 5 4 8 8 H 1.09004 * 109.47523 * 19.99369 * 7 6 5 9 9 C 1.53006 * 109.47053 * 259.99830 * 7 6 5 10 10 O 1.42906 * 109.46752 * 304.99558 * 9 7 6 11 11 N 1.46897 * 109.47459 * 139.99393 * 7 6 5 12 12 C 1.46895 * 111.00296 * 204.99681 * 11 7 6 13 13 C 1.50702 * 109.47396 * 179.97438 * 12 11 7 14 14 O 1.21295 * 119.99797 * 0.02562 * 13 12 11 15 15 N 1.34774 * 120.00197 * 180.02562 * 13 12 11 16 16 C 1.37096 * 120.00094 * 180.02562 * 15 13 12 17 17 H 1.08007 * 119.99888 * 0.02562 * 16 15 13 18 18 C 1.38952 * 120.00230 * 180.02562 * 16 15 13 19 19 N 1.31410 * 119.99658 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00247 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46771 * 59.99786 * 20 18 16 22 22 H 1.48497 * 109.47351 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47069 * 300.00119 * 20 18 16 24 24 C 1.38234 * 120.00366 * 0.26668 * 6 5 4 25 25 C 1.38230 * 120.00005 * 269.98181 * 3 2 1 26 26 H 1.09001 * 109.46799 * 59.99860 * 1 2 3 27 27 H 1.09001 * 109.46893 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47041 * 299.99704 * 1 2 3 29 29 H 1.09000 * 109.47041 * 240.00296 * 2 1 3 30 30 H 1.08991 * 109.47211 * 120.00461 * 2 1 3 31 31 H 1.08002 * 120.00060 * 359.97438 * 4 3 2 32 32 H 1.07995 * 119.99967 * 179.97438 * 5 4 3 33 33 H 1.08993 * 109.46955 * 64.99976 * 9 7 6 34 34 H 1.09000 * 109.47050 * 184.99805 * 9 7 6 35 35 H 0.96698 * 113.99404 * 180.02562 * 10 9 7 36 36 H 1.00910 * 110.99660 * 81.04716 * 11 7 6 37 37 H 1.09003 * 109.47491 * 300.00437 * 12 11 7 38 38 H 1.08999 * 109.46825 * 60.00263 * 12 11 7 39 39 H 0.97002 * 120.00057 * 0.02562 * 15 13 12 40 40 H 0.97004 * 119.99605 * 180.02562 * 19 18 16 41 41 H 1.08000 * 120.00278 * 179.73146 * 24 6 5 42 42 H 1.07995 * 120.00373 * 359.97438 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2627 2.0725 1.1972 5 6 2.7240 3.3756 1.1973 6 6 2.9556 4.0268 0.0001 7 6 3.4590 5.4472 0.0002 8 1 3.9110 5.6726 0.9661 9 6 2.2905 6.4024 -0.2513 10 8 1.6257 6.0335 -1.4613 11 7 4.4624 5.6112 -1.0601 12 6 5.3804 6.7153 -0.7500 13 6 6.3935 6.8524 -1.8573 14 8 6.3543 6.1042 -2.8112 15 7 7.3430 7.8063 -1.7876 16 6 8.2642 7.9314 -2.7952 17 1 8.2288 7.2657 -3.6450 18 6 9.2435 8.9145 -2.7232 19 7 9.2862 9.7248 -1.6895 20 14 10.4992 9.0844 -4.0956 21 1 9.7995 9.3680 -5.3744 22 1 11.4276 10.2002 -3.7819 23 1 11.2685 7.8205 -4.2221 24 6 2.7207 3.3768 -1.1970 25 6 2.2631 2.0723 -1.1971 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 2.0823 1.5635 2.1325 32 1 2.9036 3.8847 2.1326 33 1 1.5889 6.3451 0.5808 34 1 2.6669 7.4215 -0.3397 35 1 0.8727 6.5978 -1.6841 36 1 4.0214 5.7487 -1.9572 37 1 4.8151 7.6427 -0.6573 38 1 5.8944 6.5077 0.1885 39 1 7.3745 8.4044 -1.0246 40 1 9.9697 10.4113 -1.6394 41 1 2.8976 3.8871 -2.1323 42 1 2.0838 1.5631 -2.1324 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359622234.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:49 Heat of formation + Delta-G solvation = -70.483450 kcal Electronic energy + Delta-G solvation = -22726.508126 eV Core-core repulsion = 19284.869862 eV Total energy + Delta-G solvation = -3441.638263 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.71315 -38.30899 -37.35737 -35.16742 -34.04249 -33.57009 -31.22431 -30.78242 -30.32730 -27.87355 -26.11918 -24.34917 -23.75056 -22.55538 -21.57007 -20.07299 -19.28276 -17.95118 -17.51102 -16.58325 -15.72275 -15.55816 -15.36560 -15.04623 -14.77540 -14.40630 -14.17803 -13.84536 -13.75965 -13.63871 -13.34677 -13.13793 -12.77821 -12.58405 -12.20909 -12.05004 -11.76986 -11.59114 -11.48141 -11.39093 -11.24023 -11.01012 -10.75216 -10.69087 -10.42686 -10.19714 -10.07893 -9.47819 -8.71812 -8.43655 -8.38317 -7.99354 -7.92796 -6.39696 -3.80294 1.47905 1.62281 3.21848 3.27073 3.31852 3.81733 3.93600 4.11170 4.20400 4.48449 4.69279 4.80026 4.86471 5.04448 5.12415 5.17351 5.20207 5.25097 5.26965 5.31088 5.42844 5.45986 5.50436 5.64525 5.67290 5.75227 5.82747 5.95515 5.99977 6.00751 6.16956 6.26254 6.29981 6.58025 6.75300 6.82680 7.17772 7.28944 7.53174 7.57122 7.74982 8.08606 8.63866 9.20157 9.56601 10.08539 10.78099 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.028101 B = 0.002833 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.171897 B = 9881.494174 C =10235.870270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.090 4.090 4 C -0.126 4.126 5 C -0.117 4.117 6 C -0.063 4.063 7 C 0.127 3.873 8 H 0.095 0.905 9 C 0.048 3.952 10 O -0.562 6.562 11 N -0.656 5.656 12 C 0.048 3.952 13 C 0.442 3.558 14 O -0.581 6.581 15 N -0.565 5.565 16 C -0.298 4.298 17 H 0.102 0.898 18 C 0.022 3.978 19 N -0.903 5.903 20 Si 0.931 3.069 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.273 1.273 24 C -0.065 4.065 25 C -0.125 4.125 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.048 0.952 34 H 0.049 0.951 35 H 0.377 0.623 36 H 0.359 0.641 37 H 0.042 0.958 38 H 0.086 0.914 39 H 0.392 0.608 40 H 0.272 0.728 41 H 0.126 0.874 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.882 -10.264 7.968 22.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.090 4.090 4 C -0.144 4.144 5 C -0.136 4.136 6 C -0.064 4.064 7 C 0.016 3.984 8 H 0.113 0.887 9 C -0.032 4.032 10 O -0.366 6.366 11 N -0.289 5.289 12 C -0.084 4.084 13 C 0.228 3.772 14 O -0.465 6.465 15 N -0.202 5.202 16 C -0.428 4.428 17 H 0.120 0.880 18 C -0.180 4.180 19 N -0.545 5.545 20 Si 0.758 3.242 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.083 4.083 25 C -0.143 4.143 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.223 0.777 36 H 0.181 0.819 37 H 0.060 0.940 38 H 0.104 0.896 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.144 0.856 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -16.868 -11.545 7.596 21.806 hybrid contribution -0.227 1.882 -0.181 1.904 sum -17.095 -9.663 7.415 20.990 Atomic orbital electron populations 1.21741 0.95023 1.01342 1.02150 1.20512 0.95930 0.93106 1.02554 1.19808 0.99886 0.95954 0.93362 1.20823 1.01514 0.94899 0.97160 1.20919 1.00514 0.94943 0.97206 1.19551 0.98652 0.94938 0.93210 1.20623 0.89635 0.91388 0.96768 0.88669 1.22902 0.95268 0.97741 0.87271 1.86510 1.48793 1.59180 1.42165 1.60146 1.18849 1.44768 1.05145 1.21742 0.94840 0.92543 0.99287 1.19777 0.84695 0.84071 0.88689 1.90531 1.75359 1.45443 1.35130 1.41850 1.26580 1.29752 1.21977 1.19657 1.06528 1.15526 1.01094 0.87990 1.25256 0.98703 0.95931 0.98091 1.69606 1.35630 1.19730 1.29504 0.85915 0.79841 0.77837 0.80612 1.19935 1.21004 1.19875 1.20943 0.95415 0.93661 0.98312 1.21013 1.00883 0.95194 0.97197 0.92574 0.92695 0.92710 0.91226 0.91366 0.86712 0.86595 0.93398 0.93283 0.77685 0.81928 0.94025 0.89595 0.77498 0.91865 0.85588 0.86591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.90 37.16 0.37 -0.78 16 2 C -0.08 -0.76 6.06 -27.88 -0.17 -0.92 16 3 C -0.09 -1.05 5.13 -104.62 -0.54 -1.58 16 4 C -0.13 -1.44 9.70 -39.58 -0.38 -1.83 16 5 C -0.12 -1.42 9.67 -39.59 -0.38 -1.81 16 6 C -0.06 -0.86 4.83 -104.63 -0.51 -1.37 16 7 C 0.13 1.68 2.65 -68.86 -0.18 1.50 16 8 H 0.10 1.14 7.66 -51.93 -0.40 0.74 16 9 C 0.05 0.53 6.71 37.16 0.25 0.78 16 10 O -0.56 -6.42 11.44 -35.23 -0.40 -6.82 16 11 N -0.66 -11.20 5.33 -109.22 -0.58 -11.78 16 12 C 0.05 0.87 5.96 -4.98 -0.03 0.84 16 13 C 0.44 10.67 7.82 -10.99 -0.09 10.58 16 14 O -0.58 -16.19 15.78 5.54 0.09 -16.10 16 15 N -0.56 -14.52 5.29 -10.96 -0.06 -14.57 16 16 C -0.30 -8.44 9.68 -14.93 -0.14 -8.59 16 17 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 18 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 19 N -0.90 -24.75 13.05 55.50 0.72 -24.03 16 20 Si 0.93 21.30 29.55 -169.99 -5.02 16.28 16 21 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 24 C -0.07 -0.94 8.32 -39.58 -0.33 -1.27 16 25 C -0.12 -1.61 9.70 -39.58 -0.38 -2.00 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 30 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 31 H 0.11 1.07 8.06 -52.49 -0.42 0.64 16 32 H 0.12 1.16 8.04 -52.49 -0.42 0.74 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.05 0.53 7.35 -51.93 -0.38 0.15 16 35 H 0.38 2.67 9.12 45.56 0.42 3.09 16 36 H 0.36 6.58 6.99 -39.29 -0.27 6.31 16 37 H 0.04 0.66 7.36 -51.93 -0.38 0.28 16 38 H 0.09 1.42 8.05 -51.93 -0.42 1.00 16 39 H 0.39 9.57 7.90 -40.82 -0.32 9.25 16 40 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 41 H 0.13 1.97 6.99 -52.49 -0.37 1.60 16 42 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 353.19 15.07 5.32 5.32 Total: -1.00 -32.87 353.19 -7.98 -40.85 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: -5.44 Total: 16.80 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: -2.61 Total: -5.95 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: 0.08 Total: -50.38 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.32 Total: -22.92 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.87 -7.98 -40.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359622234.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.630 kcal (2) G-P(sol) polarization free energy of solvation -32.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds