Wall clock time and date at job start Tue Mar 31 2020 02:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50702 * 109.47016 * 2 1 4 4 C 1.38237 * 119.99807 * 89.99950 * 3 2 1 5 5 C 1.38231 * 120.00152 * 179.97438 * 4 3 2 6 6 C 1.38234 * 119.99689 * 359.96359 * 5 4 3 7 7 C 1.50699 * 119.99968 * 180.02562 * 6 5 4 8 8 H 1.09004 * 109.47523 * 19.99369 * 7 6 5 9 9 C 1.53006 * 109.47053 * 259.99830 * 7 6 5 10 10 O 1.42906 * 109.46752 * 304.99558 * 9 7 6 11 11 N 1.46897 * 109.47459 * 139.99393 * 7 6 5 12 12 C 1.46895 * 111.00296 * 204.99681 * 11 7 6 13 13 C 1.50702 * 109.47396 * 179.97438 * 12 11 7 14 14 O 1.21295 * 119.99797 * 0.02562 * 13 12 11 15 15 N 1.34774 * 120.00197 * 180.02562 * 13 12 11 16 16 C 1.37096 * 120.00094 * 180.02562 * 15 13 12 17 17 H 1.08007 * 119.99888 * 0.02562 * 16 15 13 18 18 C 1.38952 * 120.00230 * 180.02562 * 16 15 13 19 19 N 1.31410 * 119.99658 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00247 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46771 * 59.99786 * 20 18 16 22 22 H 1.48497 * 109.47351 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47069 * 300.00119 * 20 18 16 24 24 C 1.38234 * 120.00366 * 0.26668 * 6 5 4 25 25 C 1.38230 * 120.00005 * 269.98181 * 3 2 1 26 26 H 1.09001 * 109.46799 * 59.99860 * 1 2 3 27 27 H 1.09001 * 109.46893 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47041 * 299.99704 * 1 2 3 29 29 H 1.09000 * 109.47041 * 240.00296 * 2 1 3 30 30 H 1.08991 * 109.47211 * 120.00461 * 2 1 3 31 31 H 1.08002 * 120.00060 * 359.97438 * 4 3 2 32 32 H 1.07995 * 119.99967 * 179.97438 * 5 4 3 33 33 H 1.08993 * 109.46955 * 64.99976 * 9 7 6 34 34 H 1.09000 * 109.47050 * 184.99805 * 9 7 6 35 35 H 0.96698 * 113.99404 * 180.02562 * 10 9 7 36 36 H 1.00910 * 110.99660 * 81.04716 * 11 7 6 37 37 H 1.09003 * 109.47491 * 300.00437 * 12 11 7 38 38 H 1.08999 * 109.46825 * 60.00263 * 12 11 7 39 39 H 0.97002 * 120.00057 * 0.02562 * 15 13 12 40 40 H 0.97004 * 119.99605 * 180.02562 * 19 18 16 41 41 H 1.08000 * 120.00278 * 179.73146 * 24 6 5 42 42 H 1.07995 * 120.00373 * 359.97438 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2627 2.0725 1.1972 5 6 2.7240 3.3756 1.1973 6 6 2.9556 4.0268 0.0001 7 6 3.4590 5.4472 0.0002 8 1 3.9110 5.6726 0.9661 9 6 2.2905 6.4024 -0.2513 10 8 1.6257 6.0335 -1.4613 11 7 4.4624 5.6112 -1.0601 12 6 5.3804 6.7153 -0.7500 13 6 6.3935 6.8524 -1.8573 14 8 6.3543 6.1042 -2.8112 15 7 7.3430 7.8063 -1.7876 16 6 8.2642 7.9314 -2.7952 17 1 8.2288 7.2657 -3.6450 18 6 9.2435 8.9145 -2.7232 19 7 9.2862 9.7248 -1.6895 20 14 10.4992 9.0844 -4.0956 21 1 9.7995 9.3680 -5.3744 22 1 11.4276 10.2002 -3.7819 23 1 11.2685 7.8205 -4.2221 24 6 2.7207 3.3768 -1.1970 25 6 2.2631 2.0723 -1.1971 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 2.0823 1.5635 2.1325 32 1 2.9036 3.8847 2.1326 33 1 1.5889 6.3451 0.5808 34 1 2.6669 7.4215 -0.3397 35 1 0.8727 6.5978 -1.6841 36 1 4.0214 5.7487 -1.9572 37 1 4.8151 7.6427 -0.6573 38 1 5.8944 6.5077 0.1885 39 1 7.3745 8.4044 -1.0246 40 1 9.9697 10.4113 -1.6394 41 1 2.8976 3.8871 -2.1323 42 1 2.0838 1.5631 -2.1324 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359622234.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:48 Heat of formation + Delta-G solvation = -94.724974 kcal Electronic energy + Delta-G solvation = -22727.559317 eV Core-core repulsion = 19284.869862 eV Total energy + Delta-G solvation = -3442.689455 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.73718 -40.03297 -38.43635 -36.30376 -35.83736 -34.67863 -33.27323 -31.73368 -31.40378 -28.89167 -27.68909 -25.82510 -24.82798 -23.51785 -22.47360 -21.16328 -20.98812 -19.94106 -18.52526 -17.98618 -17.04827 -16.74584 -16.46020 -16.37635 -16.00804 -15.87203 -15.66380 -15.23110 -14.92717 -14.59136 -14.31602 -14.20799 -14.00940 -13.73074 -13.50795 -13.39666 -13.16842 -12.97658 -12.83654 -12.50304 -12.43319 -12.31397 -12.12700 -11.99698 -11.61876 -11.56404 -11.51346 -10.91915 -10.36843 -10.02487 -9.68072 -9.39489 -9.20265 -8.47260 -5.96005 0.53615 0.66032 1.39193 1.40926 1.51990 2.04546 2.28580 2.78708 3.05766 3.19705 3.36227 3.67245 3.81839 3.97881 4.03332 4.14703 4.26780 4.28269 4.35489 4.41121 4.48519 4.56481 4.57148 4.61306 4.66859 4.75239 4.80992 4.84711 5.11112 5.14100 5.24915 5.32575 5.39924 5.41488 5.62946 5.76182 5.83569 5.95722 6.15798 6.26256 6.37358 6.59894 6.89854 7.11951 7.55307 8.11344 8.69901 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.028101 B = 0.002833 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.171897 B = 9881.494174 C =10235.870270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.083 4.083 3 C -0.093 4.093 4 C -0.128 4.128 5 C -0.120 4.120 6 C -0.078 4.078 7 C 0.124 3.876 8 H 0.113 0.887 9 C 0.053 3.947 10 O -0.582 6.582 11 N -0.673 5.673 12 C 0.064 3.936 13 C 0.437 3.563 14 O -0.625 6.625 15 N -0.572 5.572 16 C -0.335 4.335 17 H 0.077 0.923 18 C -0.012 4.012 19 N -0.919 5.919 20 Si 0.993 3.007 21 H -0.272 1.272 22 H -0.269 1.269 23 H -0.273 1.273 24 C -0.087 4.087 25 C -0.140 4.140 26 H 0.047 0.953 27 H 0.070 0.930 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.070 0.930 34 H 0.053 0.947 35 H 0.393 0.607 36 H 0.348 0.652 37 H 0.069 0.931 38 H 0.107 0.893 39 H 0.397 0.603 40 H 0.278 0.722 41 H 0.102 0.898 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.530 -10.442 9.729 23.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.120 4.120 3 C -0.093 4.093 4 C -0.146 4.146 5 C -0.139 4.139 6 C -0.078 4.078 7 C 0.015 3.985 8 H 0.131 0.869 9 C -0.026 4.026 10 O -0.389 6.389 11 N -0.305 5.305 12 C -0.068 4.068 13 C 0.225 3.775 14 O -0.511 6.511 15 N -0.210 5.210 16 C -0.465 4.465 17 H 0.095 0.905 18 C -0.212 4.212 19 N -0.560 5.560 20 Si 0.816 3.184 21 H -0.197 1.197 22 H -0.193 1.193 23 H -0.198 1.198 24 C -0.106 4.106 25 C -0.158 4.158 26 H 0.066 0.934 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.158 0.842 32 H 0.158 0.842 33 H 0.089 0.911 34 H 0.071 0.929 35 H 0.243 0.757 36 H 0.168 0.832 37 H 0.087 0.913 38 H 0.125 0.875 39 H 0.231 0.769 40 H 0.088 0.912 41 H 0.120 0.880 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -17.542 -11.703 9.393 23.085 hybrid contribution -0.088 1.877 -0.712 2.009 sum -17.630 -9.826 8.681 21.971 Atomic orbital electron populations 1.21715 0.94077 1.02320 1.01811 1.20567 0.96669 0.91501 1.03301 1.20132 0.99055 0.97164 0.92934 1.21187 1.00545 0.94816 0.98084 1.21217 0.99876 0.95305 0.97468 1.19673 0.99357 0.95294 0.93522 1.20766 0.89727 0.91966 0.96083 0.86948 1.22832 0.94986 0.96957 0.87869 1.86489 1.49776 1.60108 1.42577 1.60116 1.20211 1.44414 1.05776 1.21605 0.93778 0.94373 0.97064 1.20881 0.84767 0.82442 0.89413 1.90498 1.76452 1.46784 1.37374 1.41908 1.26846 1.30465 1.21742 1.19617 1.08611 1.16503 1.01731 0.90523 1.26034 0.99841 0.95026 1.00321 1.69662 1.36149 1.19742 1.30467 0.84996 0.77520 0.78097 0.77765 1.19706 1.19306 1.19825 1.20886 0.97169 0.94543 0.97954 1.21173 1.01337 0.94953 0.98310 0.93413 0.91075 0.92552 0.91104 0.90019 0.84161 0.84199 0.91147 0.92930 0.75725 0.83226 0.91348 0.87523 0.76889 0.91246 0.87956 0.86140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.90 71.98 0.71 -1.26 16 2 C -0.08 -1.35 6.06 29.85 0.18 -1.17 16 3 C -0.09 -2.04 5.13 -19.87 -0.10 -2.14 16 4 C -0.13 -2.65 9.70 22.27 0.22 -2.43 16 5 C -0.12 -2.66 9.67 22.27 0.22 -2.45 16 6 C -0.08 -2.07 4.83 -19.87 -0.10 -2.17 16 7 C 0.12 3.14 2.65 44.17 0.12 3.26 16 8 H 0.11 2.40 7.66 -2.39 -0.02 2.38 16 9 C 0.05 1.08 6.71 71.98 0.48 1.56 16 10 O -0.58 -13.06 11.44 -148.98 -1.70 -14.77 16 11 N -0.67 -22.90 5.33 -499.46 -2.66 -25.57 16 12 C 0.06 2.24 5.96 85.56 0.51 2.75 16 13 C 0.44 21.47 7.82 87.66 0.69 22.15 16 14 O -0.62 -36.11 15.78 -3.08 -0.05 -36.16 16 15 N -0.57 -29.91 5.29 -306.98 -1.62 -31.53 16 16 C -0.34 -19.40 9.68 84.04 0.81 -18.59 16 17 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 18 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 19 N -0.92 -49.90 13.05 21.66 0.28 -49.62 16 20 Si 0.99 43.50 29.55 68.60 2.03 45.53 16 21 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 22 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 23 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 24 C -0.09 -2.58 8.32 22.27 0.19 -2.40 16 25 C -0.14 -3.65 9.70 22.27 0.22 -3.43 16 26 H 0.05 0.73 8.14 -2.39 -0.02 0.72 16 27 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.07 1.13 8.09 -2.39 -0.02 1.11 16 30 H 0.08 1.11 8.08 -2.39 -0.02 1.09 16 31 H 0.14 2.13 8.06 -2.91 -0.02 2.10 16 32 H 0.14 2.34 8.04 -2.91 -0.02 2.31 16 33 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.05 1.03 7.35 -2.39 -0.02 1.01 16 35 H 0.39 5.31 9.12 -74.06 -0.68 4.63 16 36 H 0.35 13.14 6.99 -89.69 -0.63 12.51 16 37 H 0.07 2.05 7.36 -2.39 -0.02 2.03 16 38 H 0.11 3.32 8.05 -2.39 -0.02 3.30 16 39 H 0.40 19.51 7.90 -92.71 -0.73 18.77 16 40 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 41 H 0.10 3.44 6.99 -2.91 -0.02 3.42 16 42 H 0.12 2.86 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -72.17 353.19 -0.11 -72.28 By element: Atomic # 1 Polarization: 47.34 SS G_CDS: -0.98 Total: 46.36 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: 4.60 Total: -6.51 kcal Atomic # 7 Polarization: -102.72 SS G_CDS: -4.00 Total: -106.72 kcal Atomic # 8 Polarization: -49.18 SS G_CDS: -1.75 Total: -50.93 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -72.17 -0.11 -72.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359622234.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.448 kcal (2) G-P(sol) polarization free energy of solvation -72.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds