Wall clock time and date at job start Tue Mar 31 2020 03:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30451 * 125.98407 * 2 1 4 4 N 1.39936 * 108.89142 * 180.26194 * 3 2 1 5 5 H 0.96998 * 125.74918 * 179.73166 * 4 3 2 6 6 C 1.34256 * 108.49421 * 359.75256 * 4 3 2 7 7 C 1.38049 * 107.41938 * 0.02562 * 6 4 3 8 8 C 1.47424 * 126.41854 * 179.97438 * 7 6 4 9 9 O 1.21604 * 120.00096 * 180.02562 * 8 7 6 10 10 N 1.34779 * 119.99718 * 0.02562 * 8 7 6 11 11 C 1.46502 * 119.99994 * 179.97438 * 10 8 7 12 12 C 1.52992 * 109.47309 * 180.02562 * 11 10 8 13 13 C 1.53358 * 109.42183 * 295.13335 * 12 11 10 14 14 C 1.53188 * 109.15126 * 178.67300 * 13 12 11 15 15 N 1.46927 * 108.89428 * 54.57704 * 14 13 12 16 16 C 1.36933 * 120.63022 * 126.33925 * 15 14 13 17 17 H 1.08000 * 120.00191 * 331.82823 * 16 15 14 18 18 C 1.38816 * 120.00216 * 151.82741 * 16 15 14 19 19 N 1.31624 * 119.99356 * 343.07025 * 18 16 15 20 20 Si 1.86793 * 120.00395 * 163.07047 * 18 16 15 21 21 H 1.48493 * 109.47484 * 90.00085 * 20 18 16 22 22 H 1.48503 * 109.47169 * 210.00310 * 20 18 16 23 23 H 1.48506 * 109.47138 * 329.99723 * 20 18 16 24 24 C 1.46927 * 118.73625 * 306.32307 * 15 14 13 25 25 C 1.53041 * 109.46440 * 175.00326 * 12 11 10 26 26 H 1.08997 * 109.46952 * 270.14026 * 1 2 3 27 27 H 1.08993 * 109.47193 * 30.14298 * 1 2 3 28 28 H 1.09002 * 109.46907 * 150.15020 * 1 2 3 29 29 H 1.07995 * 126.29324 * 179.97438 * 6 4 3 30 30 H 0.97001 * 120.00416 * 0.02562 * 10 8 7 31 31 H 1.09003 * 109.46742 * 60.00680 * 11 10 8 32 32 H 1.09000 * 109.47343 * 300.00678 * 11 10 8 33 33 H 1.09005 * 109.46227 * 55.03135 * 12 11 10 34 34 H 1.08999 * 109.68305 * 58.70700 * 13 12 11 35 35 H 1.09002 * 109.46954 * 298.51478 * 13 12 11 36 36 H 1.08997 * 109.58674 * 294.71955 * 14 13 12 37 37 H 1.09000 * 109.58865 * 174.43595 * 14 13 12 38 38 H 0.96997 * 119.99488 * 180.02562 * 19 18 16 39 39 H 1.09002 * 109.58387 * 173.39335 * 24 15 14 40 40 H 1.09004 * 109.58558 * 293.67310 * 24 15 14 41 41 H 1.08998 * 109.49362 * 61.43368 * 25 12 11 42 42 H 1.08995 * 109.49667 * 301.34387 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2736 1.0556 0.0000 4 7 3.6111 0.6443 -0.0061 5 1 4.3841 1.2302 -0.0110 6 6 3.6440 -0.6979 -0.0043 7 6 2.3373 -1.1432 0.0023 8 6 1.8916 -2.5485 0.0058 9 8 0.7040 -2.8097 0.0111 10 7 2.8005 -3.5437 0.0030 11 6 2.3577 -4.9402 0.0071 12 6 3.5785 -5.8623 0.0035 13 6 4.3502 -5.6816 -1.3094 14 6 5.5888 -6.5829 -1.2924 15 7 5.1680 -7.9647 -1.0232 16 6 5.5357 -8.9820 -1.8628 17 1 5.7203 -8.7800 -2.9075 18 6 5.6710 -10.2731 -1.3711 19 7 5.7780 -10.4758 -0.0749 20 14 5.7014 -11.7227 -2.5487 21 1 7.1018 -11.9982 -2.9587 22 1 5.1383 -12.9201 -1.8745 23 1 4.8880 -11.4024 -3.7492 24 6 4.3457 -8.2340 0.1642 25 6 3.1195 -7.3165 0.1334 26 1 -0.3633 0.0025 1.0276 27 1 -0.3633 0.8886 -0.5160 28 1 -0.3633 -0.8914 -0.5115 29 1 4.5298 -1.3156 -0.0082 30 1 3.7479 -3.3354 -0.0008 31 1 1.7541 -5.1324 -0.8800 32 1 1.7620 -5.1299 0.9000 33 1 4.2268 -5.6099 0.8426 34 1 4.6586 -4.6414 -1.4138 35 1 3.7106 -5.9578 -2.1477 36 1 6.2721 -6.2502 -0.5111 37 1 6.0888 -6.5351 -2.2598 38 1 5.8730 -11.3779 0.2686 39 1 4.0233 -9.2752 0.1568 40 1 4.9285 -8.0384 1.0644 41 1 2.4914 -7.5771 -0.7185 42 1 2.5511 -7.4376 1.0555 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362406931.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:49:01 Heat of formation + Delta-G solvation = 42.210239 kcal Electronic energy + Delta-G solvation = -23098.052931 eV Core-core repulsion = 19693.594184 eV Total energy + Delta-G solvation = -3404.458747 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.65416 -39.27061 -37.71081 -34.95554 -33.24191 -32.86277 -31.14305 -30.34186 -29.64665 -28.20527 -26.74260 -24.22234 -23.09434 -22.16999 -21.19050 -20.50033 -19.91163 -19.15373 -18.58513 -16.83056 -16.43071 -15.63306 -15.59018 -14.88137 -14.71014 -14.53749 -13.98693 -13.79645 -13.55134 -13.39561 -13.16021 -13.09263 -12.98726 -12.36611 -12.33897 -12.18540 -11.85432 -11.34425 -11.20195 -10.99683 -10.71600 -10.51726 -10.25566 -10.22333 -9.99357 -9.84541 -9.78002 -9.55022 -9.43277 -9.17869 -8.83764 -8.47410 -6.67515 -5.79944 -3.22164 1.23203 1.94143 2.39234 3.31190 3.36758 3.40922 3.44131 3.46648 4.24680 4.34590 4.49143 4.88638 5.03881 5.16957 5.19648 5.26221 5.37663 5.41535 5.53528 5.60232 5.65695 5.80919 5.87187 5.96245 6.05444 6.15320 6.26857 6.31326 6.42741 6.50280 6.59800 6.69245 6.75774 6.77058 6.80627 6.96672 7.22795 7.36790 7.60624 7.65636 7.78836 8.31794 8.44746 9.20889 9.84472 10.41038 11.28634 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.037071 B = 0.002839 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.123197 B = 9859.465768 C =10195.561649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.134 3.866 3 N -0.303 5.303 4 N -0.462 5.462 5 H 0.444 0.556 6 C 0.105 3.895 7 C -0.286 4.286 8 C 0.590 3.410 9 O -0.544 6.544 10 N -0.723 5.723 11 C 0.125 3.875 12 C -0.090 4.090 13 C -0.127 4.127 14 C 0.145 3.855 15 N -0.592 5.592 16 C -0.252 4.252 17 H 0.064 0.936 18 C 0.002 3.998 19 N -0.903 5.903 20 Si 0.901 3.099 21 H -0.287 1.287 22 H -0.289 1.289 23 H -0.279 1.279 24 C 0.172 3.828 25 C -0.133 4.133 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.097 0.903 29 H 0.187 0.813 30 H 0.396 0.604 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.046 0.954 35 H 0.060 0.940 36 H 0.015 0.985 37 H 0.052 0.948 38 H 0.254 0.746 39 H 0.087 0.913 40 H 0.017 0.983 41 H 0.058 0.942 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.123 19.783 1.676 20.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.033 4.033 3 N -0.126 5.126 4 N -0.166 5.166 5 H 0.288 0.712 6 C -0.048 4.048 7 C -0.301 4.301 8 C 0.377 3.623 9 O -0.423 6.423 10 N -0.374 5.374 11 C 0.002 3.998 12 C -0.109 4.109 13 C -0.166 4.166 14 C 0.019 3.981 15 N -0.315 5.315 16 C -0.382 4.382 17 H 0.082 0.918 18 C -0.197 4.197 19 N -0.548 5.548 20 Si 0.731 3.269 21 H -0.214 1.214 22 H -0.215 1.215 23 H -0.205 1.205 24 C 0.046 3.954 25 C -0.172 4.172 26 H 0.099 0.901 27 H 0.089 0.911 28 H 0.116 0.884 29 H 0.204 0.796 30 H 0.230 0.770 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.033 0.967 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.106 0.894 40 H 0.035 0.965 41 H 0.076 0.924 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.934 20.666 1.758 21.319 hybrid contribution 1.213 -1.273 -0.500 1.829 sum -3.721 19.392 1.258 19.786 Atomic orbital electron populations 1.20365 0.85590 1.04152 1.03648 1.22516 0.97448 0.88678 0.94699 1.77175 0.86247 1.22472 1.26729 1.46094 1.07867 1.05477 1.57187 0.71158 1.23203 0.99123 0.85698 0.96747 1.20381 0.92104 0.94824 1.22769 1.17225 0.85701 0.83437 0.75940 1.90738 1.16336 1.84292 1.50909 1.45924 1.09365 1.06580 1.75553 1.21566 0.97408 0.78796 1.02012 1.21367 0.95117 0.95773 0.98647 1.22130 0.99314 0.98312 0.96860 1.20883 0.92789 0.86109 0.98355 1.44043 1.57583 1.01803 1.28089 1.19165 1.41527 0.87356 0.90154 0.91807 1.25042 1.00360 0.98522 0.95739 1.70029 1.53040 1.20420 1.11280 0.86318 0.77759 0.82399 0.80427 1.21437 1.21540 1.20476 1.20761 0.87958 0.98456 0.88247 1.22167 1.00705 0.93912 1.00464 0.90141 0.91062 0.88438 0.79628 0.77010 0.91542 0.91739 0.91383 0.93549 0.92129 0.96704 0.92976 0.93640 0.89447 0.96465 0.92353 0.93016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.80 9.92 36.01 0.36 -0.45 16 2 C 0.13 1.56 7.26 -82.02 -0.60 0.97 16 3 N -0.30 -3.32 12.63 33.90 0.43 -2.90 16 4 N -0.46 -3.45 7.29 30.85 0.22 -3.22 16 5 H 0.44 1.67 8.96 -182.72 -1.64 0.03 16 6 C 0.11 0.79 11.52 -16.56 -0.19 0.60 16 7 C -0.29 -3.20 6.13 -105.07 -0.64 -3.84 16 8 C 0.59 7.85 7.81 -12.52 -0.10 7.75 16 9 O -0.54 -8.99 14.92 5.27 0.08 -8.91 16 10 N -0.72 -8.47 5.26 -61.38 -0.32 -8.80 16 11 C 0.13 1.72 5.07 -4.04 -0.02 1.70 16 12 C -0.09 -1.36 2.19 -90.42 -0.20 -1.56 16 13 C -0.13 -1.99 5.27 -26.45 -0.14 -2.13 16 14 C 0.15 2.86 6.50 -3.71 -0.02 2.83 16 15 N -0.59 -14.39 2.99 -172.32 -0.52 -14.91 16 16 C -0.25 -6.82 9.58 -15.06 -0.14 -6.96 16 17 H 0.06 1.70 7.88 -52.49 -0.41 1.28 16 18 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 19 N -0.90 -25.88 11.20 55.49 0.62 -25.26 16 20 Si 0.90 21.47 29.59 -169.99 -5.03 16.44 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 C 0.17 3.95 5.30 -3.71 -0.02 3.93 16 25 C -0.13 -2.39 5.36 -26.62 -0.14 -2.54 16 26 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.10 1.12 6.56 -51.93 -0.34 0.78 16 29 H 0.19 0.67 7.46 -52.49 -0.39 0.28 16 30 H 0.40 3.60 6.57 -40.82 -0.27 3.33 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.05 0.58 7.16 -51.93 -0.37 0.21 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.05 1.02 7.93 -51.93 -0.41 0.61 16 38 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 39 H 0.09 2.28 6.06 -51.93 -0.31 1.97 16 40 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 340.36 15.07 5.13 5.13 Total: -1.00 -33.52 340.36 -8.84 -42.36 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -7.51 Total: -0.21 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -1.95 Total: 0.27 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: 0.44 Total: -55.09 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.08 Total: -8.91 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.44 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.52 -8.84 -42.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362406931.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.571 kcal (2) G-P(sol) polarization free energy of solvation -33.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds