Wall clock time and date at job start Tue Mar 31 2020 02:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46903 * 67.63690 * 3 2 1 5 5 C 1.37099 * 120.00002 * 268.66411 * 4 3 2 6 6 H 1.08002 * 120.00442 * 201.89533 * 5 4 3 7 7 C 1.38954 * 120.00045 * 21.89990 * 5 4 3 8 8 N 1.31413 * 119.99591 * 24.03448 * 7 5 4 9 9 Si 1.86796 * 120.00340 * 204.03947 * 7 5 4 10 10 H 1.48495 * 109.47242 * 89.99370 * 9 7 5 11 11 H 1.48498 * 109.47380 * 209.99770 * 9 7 5 12 12 H 1.48506 * 109.46924 * 329.99606 * 9 7 5 13 13 C 1.34777 * 120.00250 * 88.66891 * 4 3 2 14 14 O 1.21291 * 120.00004 * 185.15360 * 13 4 3 15 15 C 1.50700 * 120.00027 * 5.15032 * 13 4 3 16 16 H 1.09000 * 110.85654 * 321.83738 * 15 13 4 17 17 C 1.54634 * 110.96415 * 85.62287 * 15 13 4 18 18 C 1.51283 * 104.19262 * 142.95741 * 17 15 13 19 19 O 1.21280 * 124.94524 * 163.76859 * 18 17 15 20 20 N 1.34423 * 110.11509 * 343.74627 * 18 17 15 21 21 C 1.46497 * 124.34747 * 179.59503 * 20 18 17 22 22 C 1.53003 * 109.47033 * 90.02672 * 21 20 18 23 23 C 1.52998 * 109.47018 * 174.99973 * 22 21 20 24 24 C 1.52997 * 109.46929 * 294.99576 * 22 21 20 25 25 C 1.46762 * 111.30054 * 359.85805 * 20 18 17 26 26 H 4.40638 * 5.51356 * 180.02562 * 4 1 2 27 27 H 1.09002 * 109.47094 * 307.63701 * 3 2 1 28 28 H 1.08998 * 109.47139 * 187.63131 * 3 2 1 29 29 H 0.97005 * 119.99565 * 180.02562 * 8 7 5 30 30 H 1.08992 * 110.48908 * 24.27464 * 17 15 13 31 31 H 1.08999 * 110.60031 * 261.68647 * 17 15 13 32 32 H 1.08998 * 109.47353 * 330.02266 * 21 20 18 33 33 H 1.09002 * 109.47126 * 210.02234 * 21 20 18 34 34 H 1.08997 * 109.47280 * 54.99516 * 22 21 20 35 35 H 1.08997 * 109.47469 * 59.99658 * 23 22 21 36 36 H 1.09007 * 109.47320 * 179.97438 * 23 22 21 37 37 H 1.09001 * 109.47299 * 299.99411 * 23 22 21 38 38 H 1.08995 * 109.47544 * 60.00140 * 24 22 21 39 39 H 1.09001 * 109.47416 * 180.02562 * 24 22 21 40 40 H 1.09005 * 109.47203 * 300.00366 * 24 22 21 41 41 H 1.09002 * 110.24675 * 135.75345 * 25 20 18 42 42 H 1.09000 * 110.24728 * 257.75442 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.5247 -1.2774 5 6 3.3897 -1.8647 -1.4149 6 1 4.0599 -2.2102 -2.1882 7 6 2.7861 -2.7783 -0.5595 8 7 1.6592 -2.4697 0.0421 9 14 3.5764 -4.4449 -0.2645 10 1 4.5060 -4.3545 0.8899 11 1 2.5213 -5.4485 0.0269 12 1 4.3301 -4.8567 -1.4760 13 6 3.3332 0.3093 -2.3173 14 8 3.6475 -0.1364 -3.4007 15 6 3.1649 1.7957 -2.1340 16 1 2.3258 2.0126 -1.4730 17 6 4.4675 2.4388 -1.6042 18 6 4.5339 3.7761 -2.3084 19 8 5.2409 4.7030 -1.9738 20 7 3.6957 3.7874 -3.3592 21 6 3.5068 4.9322 -4.2536 22 6 4.4990 4.8413 -5.4148 23 6 4.2198 5.9664 -6.4133 24 6 5.9254 4.9777 -4.8786 25 6 2.9895 2.5077 -3.4916 26 1 -1.0499 0.0001 -0.0002 27 1 3.0096 -0.6267 0.8138 28 1 3.0089 1.0194 0.1365 29 1 1.2380 -3.1073 0.6395 30 1 5.3297 1.8261 -1.8668 31 1 4.4146 2.5785 -0.5245 32 1 3.6772 5.8565 -3.7016 33 1 2.4891 4.9244 -4.6439 34 1 4.3885 3.8780 -5.9125 35 1 4.3303 6.9297 -5.9156 36 1 4.9270 5.9019 -7.2404 37 1 3.2036 5.8693 -6.7954 38 1 6.1244 4.1762 -4.1672 39 1 6.6323 4.9134 -5.7058 40 1 6.0359 5.9411 -4.3807 41 1 1.9325 2.6795 -3.6950 42 1 3.4355 1.9114 -4.2876 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490961451.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:51:25 Heat of formation + Delta-G solvation = -25.247081 kcal Electronic energy + Delta-G solvation = -23995.655649 eV Core-core repulsion = 20555.978982 eV Total energy + Delta-G solvation = -3439.676667 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.87059 -40.21966 -37.64098 -37.15879 -36.49590 -34.01395 -33.05024 -32.64862 -28.82619 -28.23696 -28.04765 -27.48223 -26.45546 -23.83869 -21.47618 -20.71535 -20.17962 -19.63398 -18.67699 -18.15545 -17.77684 -17.08842 -16.49180 -16.24397 -15.92495 -15.79999 -15.55266 -14.92248 -14.80538 -14.62461 -14.40551 -14.10193 -13.92438 -13.65606 -13.55431 -13.42795 -13.07452 -12.88259 -12.78560 -12.53679 -12.41821 -12.31400 -12.13428 -12.02073 -11.85219 -11.62587 -11.11083 -11.04996 -10.91250 -10.63061 -10.27174 -9.80598 -9.66751 -8.25054 -5.92486 1.37056 1.45668 1.51041 1.55100 1.80731 2.04354 2.17269 2.37710 2.46518 3.01048 3.06286 3.37700 3.56094 3.87681 3.90626 3.92255 3.94758 3.98761 4.15058 4.29436 4.48914 4.53914 4.58529 4.59895 4.70246 4.76565 4.82066 4.84155 4.89849 4.95583 5.00221 5.03694 5.20235 5.36138 5.39311 5.47762 5.50837 5.59489 6.04615 6.09638 6.44684 7.11952 7.16457 7.26937 7.42777 7.98203 8.67225 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.024903 B = 0.004025 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.070513 B = 6954.636239 C = 7267.060708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.152 4.152 3 C 0.233 3.767 4 N -0.444 5.444 5 C -0.354 4.354 6 H 0.075 0.925 7 C 0.009 3.991 8 N -0.859 5.859 9 Si 0.976 3.024 10 H -0.266 1.266 11 H -0.281 1.281 12 H -0.278 1.278 13 C 0.457 3.543 14 O -0.619 6.619 15 C -0.105 4.105 16 H 0.118 0.882 17 C -0.138 4.138 18 C 0.522 3.478 19 O -0.562 6.562 20 N -0.608 5.608 21 C 0.125 3.875 22 C -0.114 4.114 23 C -0.137 4.137 24 C -0.137 4.137 25 C 0.124 3.876 26 H 0.227 0.773 27 H 0.082 0.918 28 H 0.104 0.896 29 H 0.271 0.729 30 H 0.096 0.904 31 H 0.125 0.875 32 H 0.080 0.920 33 H 0.104 0.896 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.026 0.974 39 H 0.058 0.942 40 H 0.052 0.948 41 H 0.102 0.898 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.550 13.040 -3.498 13.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.153 4.153 3 C 0.111 3.889 4 N -0.161 5.161 5 C -0.482 4.482 6 H 0.093 0.907 7 C -0.196 4.196 8 N -0.495 5.495 9 Si 0.801 3.199 10 H -0.191 1.191 11 H -0.207 1.207 12 H -0.203 1.203 13 C 0.246 3.754 14 O -0.506 6.506 15 C -0.127 4.127 16 H 0.136 0.864 17 C -0.178 4.178 18 C 0.311 3.689 19 O -0.442 6.442 20 N -0.340 5.340 21 C 0.005 3.995 22 C -0.133 4.133 23 C -0.195 4.195 24 C -0.195 4.195 25 C 0.001 3.999 26 H 0.244 0.756 27 H 0.100 0.900 28 H 0.122 0.878 29 H 0.081 0.919 30 H 0.115 0.885 31 H 0.143 0.857 32 H 0.098 0.902 33 H 0.123 0.877 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.045 0.955 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.120 0.880 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.174 13.252 -3.754 13.775 hybrid contribution 0.098 -1.470 0.218 1.490 sum -0.076 11.782 -3.536 12.301 Atomic orbital electron populations 1.24986 0.96226 1.04919 0.99894 1.23242 0.94861 0.96768 1.00475 1.18278 0.84808 0.98802 0.87023 1.43802 1.56092 1.06791 1.09402 1.19489 1.27165 0.82198 1.19313 0.90746 1.25928 0.94479 1.02213 0.96964 1.70215 1.13279 1.37432 1.28543 0.85193 0.78149 0.77871 0.78689 1.19077 1.20663 1.20286 1.20302 0.83003 0.88545 0.83562 1.90501 1.54573 1.78801 1.26702 1.21990 0.99852 0.91611 0.99226 0.86444 1.22307 0.98176 0.94058 1.03279 1.20832 0.78557 0.88806 0.80743 1.90671 1.42726 1.41240 1.69583 1.48347 1.41965 1.14902 1.28833 1.21721 1.00566 0.87172 0.90076 1.21538 0.94999 1.00480 0.96327 1.21718 1.02507 0.97204 0.98042 1.21749 0.96689 1.00973 1.00054 1.21893 0.98627 0.82869 0.96552 0.75632 0.90005 0.87788 0.91914 0.88525 0.85659 0.90194 0.87735 0.91639 0.92018 0.92000 0.91153 0.95465 0.92279 0.92918 0.87973 0.90943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.12 19.04 74.32 1.42 -7.70 16 2 C -0.15 -6.24 10.64 31.13 0.33 -5.91 16 3 C 0.23 9.37 4.83 84.57 0.41 9.78 16 4 N -0.44 -20.97 2.58 -645.40 -1.67 -22.64 16 5 C -0.35 -18.93 9.18 84.04 0.77 -18.16 16 6 H 0.07 4.31 7.53 -2.91 -0.02 4.29 16 7 C 0.01 0.46 4.78 84.93 0.41 0.87 16 8 N -0.86 -43.03 9.42 21.66 0.20 -42.83 16 9 Si 0.98 40.60 29.62 68.60 2.03 42.63 16 10 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 11 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 12 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 13 C 0.46 20.34 6.76 87.66 0.59 20.93 16 14 O -0.62 -32.48 15.30 -3.06 -0.05 -32.52 16 15 C -0.10 -3.39 2.48 -10.54 -0.03 -3.42 16 16 H 0.12 3.45 6.68 -2.39 -0.02 3.43 16 17 C -0.14 -4.11 6.11 30.59 0.19 -3.93 16 18 C 0.52 16.19 6.62 87.90 0.58 16.77 16 19 O -0.56 -20.15 16.41 -3.03 -0.05 -20.20 16 20 N -0.61 -16.33 2.78 -818.34 -2.28 -18.60 16 21 C 0.13 2.66 5.38 86.38 0.47 3.12 16 22 C -0.11 -2.36 3.13 -10.79 -0.03 -2.39 16 23 C -0.14 -2.04 9.19 71.98 0.66 -1.37 16 24 C -0.14 -3.39 8.33 71.98 0.60 -2.79 16 25 C 0.12 3.57 6.84 86.77 0.59 4.16 16 26 H 0.23 6.72 7.80 -4.42 -0.03 6.68 16 27 H 0.08 3.49 7.13 -2.39 -0.02 3.47 16 28 H 0.10 3.28 5.76 -2.39 -0.01 3.27 16 29 H 0.27 12.94 8.31 -92.70 -0.77 12.17 16 30 H 0.10 3.15 7.89 -2.39 -0.02 3.13 16 31 H 0.13 3.17 7.61 -2.39 -0.02 3.15 16 32 H 0.08 1.75 7.93 -2.39 -0.02 1.73 16 33 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 37 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.03 0.81 6.12 -2.39 -0.01 0.80 16 39 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 41 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 42 H 0.07 2.46 6.85 -2.39 -0.02 2.44 16 Total: -1.00 -66.84 345.51 6.16 -60.68 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: 1.01 Total: 23.52 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: 6.95 Total: 9.96 kcal Atomic # 7 Polarization: -80.33 SS G_CDS: -3.74 Total: -84.07 kcal Atomic # 8 Polarization: -52.63 SS G_CDS: -0.10 Total: -52.73 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 2.03 Total: 42.63 kcal Total: -66.84 6.16 -60.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490961451.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.431 kcal (2) G-P(sol) polarization free energy of solvation -66.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds