Wall clock time and date at job start Tue Mar 31 2020 02:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46505 * 109.46946 * 209.35429 * 3 2 1 5 5 C 1.37091 * 119.99702 * 92.31855 * 4 3 2 6 6 H 1.08002 * 119.99956 * 316.12320 * 5 4 3 7 7 C 1.38952 * 120.00098 * 136.12872 * 5 4 3 8 8 N 1.31406 * 120.00274 * 162.65816 * 7 5 4 9 9 Si 1.86803 * 119.99799 * 342.65143 * 7 5 4 10 10 H 1.48504 * 109.46849 * 94.62735 * 9 7 5 11 11 H 1.48496 * 109.47126 * 214.62848 * 9 7 5 12 12 H 1.48500 * 109.47202 * 334.63137 * 9 7 5 13 13 C 1.34776 * 119.99834 * 272.31751 * 4 3 2 14 14 O 1.21295 * 119.99751 * 186.09401 * 13 4 3 15 15 C 1.50701 * 120.00063 * 6.36663 * 13 4 3 16 16 H 1.08995 * 110.85633 * 323.16851 * 15 13 4 17 17 C 1.54629 * 110.96467 * 86.96364 * 15 13 4 18 18 C 1.51285 * 104.19183 * 142.91614 * 17 15 13 19 19 O 1.21286 * 124.94132 * 163.71332 * 18 17 15 20 20 N 1.34415 * 110.11530 * 343.74172 * 18 17 15 21 21 C 1.46505 * 124.34933 * 179.59191 * 20 18 17 22 22 C 1.53000 * 109.47196 * 359.97139 * 21 20 18 23 23 C 1.52993 * 109.47337 * 119.97464 * 21 20 18 24 24 C 1.53001 * 109.46869 * 239.97872 * 21 20 18 25 25 C 1.46820 * 111.31822 * 359.62801 * 20 18 17 26 26 H 4.40646 * 5.51434 * 179.97438 * 4 1 2 27 27 H 1.08999 * 109.46916 * 89.35768 * 3 2 1 28 28 H 1.08999 * 109.46999 * 329.35668 * 3 2 1 29 29 H 0.97000 * 120.00570 * 179.97438 * 8 7 5 30 30 H 1.09000 * 110.48397 * 261.59086 * 17 15 13 31 31 H 1.08993 * 110.49122 * 24.24011 * 17 15 13 32 32 H 1.09002 * 109.46715 * 60.00453 * 22 21 20 33 33 H 1.08995 * 109.47531 * 179.97438 * 22 21 20 34 34 H 1.09002 * 109.47675 * 300.00694 * 22 21 20 35 35 H 1.09006 * 109.46938 * 60.00268 * 23 21 20 36 36 H 1.09000 * 109.47072 * 179.97438 * 23 21 20 37 37 H 1.09002 * 109.47323 * 300.00006 * 23 21 20 38 38 H 1.08995 * 109.47592 * 59.99637 * 24 21 20 39 39 H 1.09000 * 109.47087 * 179.97438 * 24 21 20 40 40 H 1.08998 * 109.46963 * 299.99462 * 24 21 20 41 41 H 1.09003 * 110.23618 * 257.98166 * 25 20 18 42 42 H 1.09004 * 110.28351 * 135.96942 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2048 0.6771 5 6 3.4075 1.1727 2.0200 6 1 2.7231 0.6861 2.6992 7 6 4.5655 1.7662 2.5075 8 7 4.6737 2.0419 3.7877 9 14 5.9684 2.1721 1.3427 10 1 5.8478 3.5830 0.8954 11 1 7.2639 1.9840 2.0438 12 1 5.9086 1.2720 0.1631 13 6 3.3133 2.3441 -0.0203 14 8 3.8204 3.3081 0.5133 15 6 2.8785 2.4221 -1.4611 16 1 3.0562 1.4757 -1.9718 17 6 1.3934 2.8390 -1.5690 18 6 1.3470 3.7336 -2.7881 19 8 0.3370 4.0451 -3.3831 20 7 2.5879 4.1324 -3.1164 21 6 2.9034 5.0010 -4.2532 22 6 1.6126 5.3689 -4.9877 23 6 3.5837 6.2750 -3.7483 24 6 3.8434 4.2661 -5.2110 25 6 3.5870 3.5853 -2.1900 26 1 -1.0503 -0.0002 -0.0004 27 1 3.0093 -0.0107 -1.0276 28 1 3.0097 -0.8833 0.5238 29 1 5.4822 2.4559 4.1281 30 1 0.7609 1.9632 -1.7141 31 1 1.0861 3.3896 -0.6800 32 1 0.9430 5.8924 -4.3053 33 1 1.8473 6.0155 -5.8332 34 1 1.1279 4.4613 -5.3474 35 1 4.5034 6.0129 -3.2251 36 1 3.8188 6.9210 -4.5942 37 1 2.9140 6.7985 -3.0659 38 1 3.3587 3.3585 -5.5707 39 1 4.0778 4.9122 -6.0571 40 1 4.7630 4.0041 -4.6879 41 1 3.8947 4.3475 -1.4742 42 1 4.4508 3.2144 -2.7418 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490996909.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:51:34 Heat of formation + Delta-G solvation = 9.172085 kcal Electronic energy + Delta-G solvation = -24744.372251 eV Core-core repulsion = 21306.188111 eV Total energy + Delta-G solvation = -3438.184140 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.84216 -39.03807 -36.64177 -35.55385 -35.11524 -32.72550 -31.65027 -30.34415 -27.86124 -27.43747 -27.18733 -26.76722 -24.96696 -22.29605 -21.33114 -19.41658 -18.52754 -18.20984 -17.54181 -16.45667 -16.34727 -15.53947 -15.12773 -15.08018 -14.39285 -14.13317 -13.96279 -13.87104 -13.65102 -13.44822 -13.00405 -12.97800 -12.67197 -12.61187 -12.24628 -12.14761 -12.10723 -11.90582 -11.72101 -11.35595 -11.17867 -11.06695 -11.03411 -10.92074 -10.42355 -10.05503 -9.93320 -9.75801 -9.29526 -8.73669 -8.59965 -8.48193 -7.85053 -6.25381 -4.09738 2.75122 2.97410 3.06867 3.19272 3.22395 3.38074 3.59962 3.68869 4.23664 4.47479 4.53228 4.67241 4.80339 4.82297 4.91388 4.94841 5.10562 5.11335 5.22310 5.41788 5.44861 5.51872 5.60957 5.63739 5.71767 5.74020 5.79681 5.81956 5.85424 5.97637 6.02281 6.07280 6.17944 6.25187 6.30188 6.32189 6.73554 7.25555 7.73989 7.83474 7.99188 8.34447 8.63004 8.72729 9.30881 9.60448 10.78683 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.017185 B = 0.006150 C = 0.004971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.946320 B = 4551.951452 C = 5630.924659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.181 4.181 3 C 0.203 3.797 4 N -0.453 5.453 5 C -0.354 4.354 6 H 0.095 0.905 7 C 0.090 3.910 8 N -0.865 5.865 9 Si 0.925 3.075 10 H -0.253 1.253 11 H -0.312 1.312 12 H -0.284 1.284 13 C 0.460 3.540 14 O -0.532 6.532 15 C -0.120 4.120 16 H 0.100 0.900 17 C -0.135 4.135 18 C 0.524 3.476 19 O -0.536 6.536 20 N -0.609 5.609 21 C 0.172 3.828 22 C -0.139 4.139 23 C -0.158 4.158 24 C -0.157 4.157 25 C 0.112 3.888 26 H 0.212 0.788 27 H 0.083 0.917 28 H 0.104 0.896 29 H 0.273 0.727 30 H 0.105 0.895 31 H 0.108 0.892 32 H 0.069 0.931 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.095 0.905 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.778 0.908 -16.243 16.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.182 4.182 3 C 0.080 3.920 4 N -0.173 5.173 5 C -0.480 4.480 6 H 0.113 0.887 7 C -0.120 4.120 8 N -0.499 5.499 9 Si 0.757 3.243 10 H -0.179 1.179 11 H -0.243 1.243 12 H -0.210 1.210 13 C 0.250 3.750 14 O -0.415 6.415 15 C -0.142 4.142 16 H 0.118 0.882 17 C -0.176 4.176 18 C 0.312 3.688 19 O -0.414 6.414 20 N -0.343 5.343 21 C 0.089 3.911 22 C -0.196 4.196 23 C -0.216 4.216 24 C -0.215 4.215 25 C -0.011 4.011 26 H 0.229 0.771 27 H 0.101 0.899 28 H 0.122 0.878 29 H 0.083 0.917 30 H 0.123 0.877 31 H 0.127 0.873 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.113 0.887 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.911 1.672 -16.159 16.357 hybrid contribution 0.549 -0.015 -0.297 0.624 sum -1.362 1.657 -16.456 16.595 Atomic orbital electron populations 1.24782 0.95773 1.00876 1.01919 1.23876 0.95101 0.99877 0.99364 1.18680 0.83546 0.91681 0.98088 1.43534 1.58594 1.06059 1.09130 1.18843 1.07451 1.42271 0.79393 0.88721 1.25394 0.97998 0.92882 0.95697 1.69728 1.28057 1.37826 1.14281 0.86110 0.78035 0.80364 0.79801 1.17915 1.24269 1.21005 1.19892 0.83817 0.83820 0.87495 1.90517 1.44692 1.36256 1.69999 1.22213 0.95906 0.99612 0.96511 0.88214 1.22277 0.96230 1.00926 0.98141 1.20852 0.82766 0.80227 0.84927 1.90684 1.34160 1.59558 1.57016 1.48461 1.07924 1.49198 1.28742 1.20446 0.96218 0.89415 0.85047 1.22082 0.95482 1.02394 0.99628 1.22193 1.01108 0.96654 1.01673 1.22185 0.99467 1.00862 0.99018 1.22051 0.91006 0.96272 0.91750 0.77108 0.89869 0.87771 0.91666 0.87688 0.87347 0.91241 0.92679 0.91349 0.91980 0.91493 0.92027 0.92164 0.91400 0.92095 0.88697 0.90521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.18 18.73 29.55 0.55 -2.63 16 2 C -0.18 -2.99 12.21 -37.12 -0.45 -3.45 16 3 C 0.20 3.48 5.62 -6.83 -0.04 3.45 16 4 N -0.45 -10.10 2.11 -117.93 -0.25 -10.34 16 5 C -0.35 -9.53 9.72 -14.94 -0.15 -9.68 16 6 H 0.10 2.73 8.06 -52.49 -0.42 2.30 16 7 C 0.09 2.54 4.92 -17.47 -0.09 2.45 16 8 N -0.86 -25.68 13.96 55.50 0.77 -24.91 16 9 Si 0.92 23.24 24.63 -169.99 -4.19 19.05 16 10 H -0.25 -6.59 6.19 56.52 0.35 -6.24 16 11 H -0.31 -7.81 7.11 56.52 0.40 -7.41 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.46 9.98 5.22 -10.98 -0.06 9.93 16 14 O -0.53 -13.55 10.50 5.54 0.06 -13.50 16 15 C -0.12 -1.97 2.76 -90.14 -0.25 -2.22 16 16 H 0.10 1.39 6.20 -51.93 -0.32 1.07 16 17 C -0.14 -2.16 5.92 -26.74 -0.16 -2.32 16 18 C 0.52 8.52 7.84 -10.86 -0.09 8.43 16 19 O -0.54 -9.75 13.99 5.55 0.08 -9.67 16 20 N -0.61 -8.79 2.76 -157.53 -0.43 -9.23 16 21 C 0.17 2.08 1.20 -131.82 -0.16 1.93 16 22 C -0.14 -1.71 7.00 37.16 0.26 -1.45 16 23 C -0.16 -1.75 8.54 37.15 0.32 -1.44 16 24 C -0.16 -1.56 8.49 37.16 0.32 -1.25 16 25 C 0.11 1.71 6.09 -3.09 -0.02 1.69 16 26 H 0.21 2.36 7.80 -54.08 -0.42 1.94 16 27 H 0.08 1.16 6.13 -51.93 -0.32 0.84 16 28 H 0.10 1.70 8.02 -51.93 -0.42 1.29 16 29 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 30 H 0.10 1.57 6.72 -51.93 -0.35 1.22 16 31 H 0.11 1.91 7.89 -51.93 -0.41 1.50 16 32 H 0.07 0.99 7.06 -51.93 -0.37 0.63 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.94 7.08 -51.93 -0.37 0.57 16 35 H 0.06 0.70 7.90 -51.93 -0.41 0.29 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.59 7.21 -51.93 -0.37 0.22 16 41 H 0.09 1.66 6.86 -51.93 -0.36 1.30 16 42 H 0.08 1.01 7.13 -51.93 -0.37 0.64 16 LS Contribution 335.68 15.07 5.06 5.06 Total: -1.00 -32.84 335.68 -5.11 -37.95 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -6.21 Total: 2.14 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: 0.00 Total: 3.43 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: 0.09 Total: -44.48 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: 0.14 Total: -23.16 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -4.19 Total: 19.05 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.84 -5.11 -37.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490996909.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.126 kcal (2) G-P(sol) polarization free energy of solvation -32.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds