Wall clock time and date at job start Tue Mar 31 2020 03:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47004 * 225.05706 * 3 2 1 5 5 C 1.37096 * 119.99950 * 86.76122 * 4 3 2 6 6 H 1.07999 * 120.00297 * 167.35831 * 5 4 3 7 7 C 1.38956 * 119.99791 * 347.35682 * 5 4 3 8 8 N 1.31407 * 120.00023 * 334.07400 * 7 5 4 9 9 Si 1.86802 * 120.00031 * 154.07595 * 7 5 4 10 10 H 1.48498 * 109.47042 * 59.99657 * 9 7 5 11 11 H 1.48500 * 109.46871 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46876 * 299.99830 * 9 7 5 13 13 C 1.34773 * 120.00596 * 266.76062 * 4 3 2 14 14 O 1.21293 * 120.00555 * 184.18544 * 13 4 3 15 15 C 1.50704 * 119.99511 * 4.18413 * 13 4 3 16 16 H 1.09000 * 109.47504 * 30.17533 * 15 13 4 17 17 C 1.53006 * 109.47590 * 270.17154 * 15 13 4 18 18 N 1.46508 * 109.46995 * 150.17172 * 15 13 4 19 19 C 1.34777 * 120.00069 * 204.99975 * 18 15 13 20 20 O 1.21283 * 119.99967 * 0.02562 * 19 18 15 21 21 C 1.50696 * 120.00008 * 180.02562 * 19 18 15 22 22 C 1.55234 * 110.57992 * 294.87413 * 21 19 18 23 23 C 1.54883 * 102.58801 * 203.33881 * 22 21 19 24 24 C 1.54258 * 104.31408 * 37.93246 * 23 22 21 25 25 C 1.53871 * 106.59799 * 336.32257 * 24 23 22 26 26 H 4.40640 * 5.51463 * 179.97438 * 4 1 2 27 27 H 1.09000 * 109.46842 * 105.06273 * 3 2 1 28 28 H 1.08997 * 109.47621 * 345.06553 * 3 2 1 29 29 H 0.96998 * 120.00429 * 180.02562 * 8 7 5 30 30 H 1.08999 * 109.46506 * 302.66797 * 17 15 13 31 31 H 1.09001 * 109.46660 * 62.65881 * 17 15 13 32 32 H 1.08991 * 109.47264 * 182.66565 * 17 15 13 33 33 H 0.97001 * 119.99380 * 25.00439 * 18 15 13 34 34 H 1.09004 * 110.43604 * 57.45500 * 21 19 18 35 35 H 1.09001 * 110.89879 * 85.04560 * 22 21 19 36 36 H 1.09003 * 110.77093 * 321.56992 * 22 21 19 37 37 H 1.09000 * 110.49088 * 279.18255 * 23 22 21 38 38 H 1.09003 * 110.48692 * 156.67702 * 23 22 21 39 39 H 1.09003 * 110.03278 * 95.61019 * 24 23 22 40 40 H 1.09007 * 110.03314 * 216.98772 * 24 23 22 41 41 H 1.09004 * 110.03309 * 119.28558 * 25 24 23 42 42 H 1.09003 * 110.03477 * 240.66824 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 0.9766 0.9776 5 6 3.2992 0.6099 2.2883 6 1 3.8444 1.2522 2.9640 7 6 2.7653 -0.5881 2.7472 8 7 1.7205 -1.1139 2.1484 9 14 3.5328 -1.4510 4.2155 10 1 3.4777 -0.5566 5.3997 11 1 2.7825 -2.6997 4.5035 12 1 4.9479 -1.7822 3.9108 13 6 3.4201 2.2348 0.5887 14 8 3.8955 3.0211 1.3805 15 6 3.1496 2.6648 -0.8301 16 1 2.2993 2.1073 -1.2229 17 6 4.3833 2.3871 -1.6914 18 7 2.8480 4.0983 -0.8569 19 6 2.1056 4.6122 -1.8575 20 8 1.6868 3.8879 -2.7356 21 6 1.7959 6.0867 -1.8853 22 6 0.9048 6.4800 -0.6766 23 6 0.2151 7.7750 -1.1729 24 6 -0.0678 7.5083 -2.6657 25 6 0.9373 6.4349 -3.1187 26 1 -1.0502 -0.0001 -0.0003 27 1 3.0091 0.2679 -0.9924 28 1 3.0098 -0.9921 0.2648 29 1 1.3476 -1.9500 2.4690 30 1 5.2442 2.9070 -1.2711 31 1 4.5797 1.3150 -1.7097 32 1 4.2049 2.7413 -2.7066 33 1 3.1827 4.6774 -0.1544 34 1 2.7173 6.6692 -1.8851 35 1 1.5126 6.6799 0.2058 36 1 0.1673 5.7040 -0.4714 37 1 0.8811 8.6302 -1.0577 38 1 -0.7163 7.9425 -0.6321 39 1 -1.0869 7.1432 -2.7932 40 1 0.0759 8.4224 -3.2421 41 1 0.4061 5.5488 -3.4660 42 1 1.5691 6.8274 -3.9155 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491148109.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:12 Heat of formation + Delta-G solvation = -17.468134 kcal Electronic energy + Delta-G solvation = -23941.363430 eV Core-core repulsion = 20502.024083 eV Total energy + Delta-G solvation = -3439.339347 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.07609 -38.79289 -37.04209 -35.44746 -34.33477 -32.11159 -31.33455 -30.66550 -28.81819 -28.56846 -26.47069 -25.27722 -23.52369 -21.64152 -20.51229 -19.57631 -19.07678 -17.97156 -17.50228 -16.55415 -15.98309 -15.88498 -15.37204 -14.89757 -14.68308 -14.28838 -14.12949 -13.68124 -13.49597 -13.38648 -13.03671 -12.56489 -12.33823 -11.96467 -11.86258 -11.70410 -11.68211 -11.32710 -11.20476 -11.18996 -11.09272 -10.98211 -10.80737 -10.58190 -10.48043 -10.36541 -9.49400 -9.28942 -9.26677 -8.94064 -8.82520 -8.40506 -7.99800 -6.36348 -3.90205 2.88528 3.10009 3.21796 3.24410 3.33664 3.75242 3.88021 4.11302 4.20720 4.45257 4.54452 4.73993 4.79877 4.99297 5.19099 5.29778 5.40462 5.43077 5.48037 5.51839 5.57449 5.58474 5.62520 5.71582 5.80854 5.85439 5.98562 6.03798 6.12620 6.15891 6.22349 6.23962 6.33184 6.48023 6.63335 6.79037 7.06633 7.49929 7.84745 7.93698 8.31793 8.53182 8.94639 9.02146 9.26243 9.76720 10.57219 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.022568 B = 0.004065 C = 0.004020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.422419 B = 6887.145613 C = 6964.270437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.109 4.109 3 C 0.230 3.770 4 N -0.428 5.428 5 C -0.325 4.325 6 H 0.108 0.892 7 C 0.036 3.964 8 N -0.847 5.847 9 Si 0.919 3.081 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.442 3.558 14 O -0.585 6.585 15 C 0.127 3.873 16 H 0.099 0.901 17 C -0.154 4.154 18 N -0.704 5.704 19 C 0.519 3.481 20 O -0.546 6.546 21 C -0.113 4.113 22 C -0.116 4.116 23 C -0.123 4.123 24 C -0.124 4.124 25 C -0.111 4.111 26 H 0.197 0.803 27 H 0.068 0.932 28 H 0.101 0.899 29 H 0.270 0.730 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.407 0.593 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.084 0.916 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.915 10.245 -8.356 13.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 C -0.111 4.111 3 C 0.107 3.893 4 N -0.145 5.145 5 C -0.451 4.451 6 H 0.125 0.875 7 C -0.170 4.170 8 N -0.483 5.483 9 Si 0.745 3.255 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.198 1.198 13 C 0.229 3.771 14 O -0.470 6.470 15 C 0.019 3.981 16 H 0.117 0.883 17 C -0.213 4.213 18 N -0.356 5.356 19 C 0.305 3.695 20 O -0.424 6.424 21 C -0.134 4.134 22 C -0.153 4.153 23 C -0.160 4.160 24 C -0.162 4.162 25 C -0.149 4.149 26 H 0.214 0.786 27 H 0.086 0.914 28 H 0.119 0.881 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.244 0.756 34 H 0.117 0.883 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.103 0.897 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.076 9.887 -8.534 13.105 hybrid contribution 0.099 -0.446 1.179 1.265 sum -0.978 9.441 -7.354 12.008 Atomic orbital electron populations 1.24148 0.95259 1.02900 1.05108 1.22767 0.94037 0.98142 0.96156 1.18327 0.84995 0.95330 0.90655 1.43693 1.54864 1.07456 1.08526 1.19614 1.34418 1.05097 0.86014 0.87472 1.25292 0.94556 0.97897 0.99236 1.70147 1.16937 1.19676 1.41536 0.86117 0.79438 0.78598 0.81331 1.19810 1.21016 1.19802 1.19846 0.85789 0.82638 0.88791 1.90499 1.49520 1.51967 1.54985 1.20795 0.99399 0.82501 0.95434 0.88280 1.22075 0.97311 1.02316 0.99565 1.45795 1.53356 1.09079 1.27366 1.20499 0.77374 0.90263 0.81367 1.90657 1.52596 1.61402 1.37729 1.22203 1.00531 0.92742 0.97924 1.22562 0.98560 0.97840 0.96379 1.22344 1.00497 0.97402 0.95794 1.22147 0.99492 0.98572 0.95978 1.22061 0.97207 0.99686 0.95985 0.78624 0.91437 0.88121 0.91881 0.91940 0.91283 0.91883 0.75642 0.88350 0.90602 0.90778 0.91483 0.91475 0.91754 0.91904 0.89702 0.91674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -5.58 19.08 29.55 0.56 -5.02 16 2 C -0.11 -2.52 10.45 -37.12 -0.39 -2.91 16 3 C 0.23 5.09 4.82 -6.83 -0.03 5.05 16 4 N -0.43 -10.57 2.59 -117.93 -0.31 -10.88 16 5 C -0.32 -8.71 9.37 -14.93 -0.14 -8.85 16 6 H 0.11 3.03 7.34 -52.49 -0.39 2.64 16 7 C 0.04 0.92 4.83 -17.47 -0.08 0.83 16 8 N -0.85 -21.77 9.00 55.50 0.50 -21.27 16 9 Si 0.92 19.98 29.62 -169.99 -5.04 14.94 16 10 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 11 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 12 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 13 C 0.44 10.35 6.80 -10.99 -0.07 10.28 16 14 O -0.58 -15.12 15.71 5.55 0.09 -15.04 16 15 C 0.13 2.46 2.12 -69.07 -0.15 2.31 16 16 H 0.10 2.06 5.80 -51.93 -0.30 1.76 16 17 C -0.15 -2.53 9.30 37.16 0.35 -2.18 16 18 N -0.70 -12.16 5.05 -54.92 -0.28 -12.44 16 19 C 0.52 8.47 7.10 -10.99 -0.08 8.40 16 20 O -0.55 -10.56 15.09 5.55 0.08 -10.48 16 21 C -0.11 -1.38 3.25 -89.93 -0.29 -1.67 16 22 C -0.12 -1.33 6.34 -24.55 -0.16 -1.48 16 23 C -0.12 -1.14 6.82 -25.08 -0.17 -1.31 16 24 C -0.12 -1.18 6.80 -25.62 -0.17 -1.35 16 25 C -0.11 -1.28 6.18 -25.62 -0.16 -1.44 16 26 H 0.20 3.58 7.80 -54.08 -0.42 3.16 16 27 H 0.07 1.27 5.31 -51.93 -0.28 1.00 16 28 H 0.10 2.28 6.87 -51.93 -0.36 1.92 16 29 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.07 1.06 7.02 -51.93 -0.36 0.69 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.41 6.76 7.85 -40.82 -0.32 6.44 16 34 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.98 8.06 -51.93 -0.42 0.56 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.08 1.17 6.85 -51.93 -0.36 0.81 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 346.13 15.07 5.22 5.22 Total: -1.00 -30.94 346.13 -6.86 -37.80 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -6.14 Total: 11.49 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -0.99 Total: 0.64 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: -0.08 Total: -44.59 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: 0.17 Total: -25.51 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.04 Total: 14.94 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.94 -6.86 -37.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491148109.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.332 kcal (2) G-P(sol) polarization free energy of solvation -30.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds