Wall clock time and date at job start Tue Mar 31 2020 03:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47004 * 225.05706 * 3 2 1 5 5 C 1.37096 * 119.99950 * 86.76122 * 4 3 2 6 6 H 1.07999 * 120.00297 * 167.35831 * 5 4 3 7 7 C 1.38956 * 119.99791 * 347.35682 * 5 4 3 8 8 N 1.31407 * 120.00023 * 334.07400 * 7 5 4 9 9 Si 1.86802 * 120.00031 * 154.07595 * 7 5 4 10 10 H 1.48498 * 109.47042 * 59.99657 * 9 7 5 11 11 H 1.48500 * 109.46871 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46876 * 299.99830 * 9 7 5 13 13 C 1.34773 * 120.00596 * 266.76062 * 4 3 2 14 14 O 1.21293 * 120.00555 * 184.18544 * 13 4 3 15 15 C 1.50704 * 119.99511 * 4.18413 * 13 4 3 16 16 H 1.09000 * 109.47504 * 30.17533 * 15 13 4 17 17 C 1.53006 * 109.47590 * 270.17154 * 15 13 4 18 18 N 1.46508 * 109.46995 * 150.17172 * 15 13 4 19 19 C 1.34777 * 120.00069 * 204.99975 * 18 15 13 20 20 O 1.21283 * 119.99967 * 0.02562 * 19 18 15 21 21 C 1.50696 * 120.00008 * 180.02562 * 19 18 15 22 22 C 1.55234 * 110.57992 * 294.87413 * 21 19 18 23 23 C 1.54883 * 102.58801 * 203.33881 * 22 21 19 24 24 C 1.54258 * 104.31408 * 37.93246 * 23 22 21 25 25 C 1.53871 * 106.59799 * 336.32257 * 24 23 22 26 26 H 4.40640 * 5.51463 * 179.97438 * 4 1 2 27 27 H 1.09000 * 109.46842 * 105.06273 * 3 2 1 28 28 H 1.08997 * 109.47621 * 345.06553 * 3 2 1 29 29 H 0.96998 * 120.00429 * 180.02562 * 8 7 5 30 30 H 1.08999 * 109.46506 * 302.66797 * 17 15 13 31 31 H 1.09001 * 109.46660 * 62.65881 * 17 15 13 32 32 H 1.08991 * 109.47264 * 182.66565 * 17 15 13 33 33 H 0.97001 * 119.99380 * 25.00439 * 18 15 13 34 34 H 1.09004 * 110.43604 * 57.45500 * 21 19 18 35 35 H 1.09001 * 110.89879 * 85.04560 * 22 21 19 36 36 H 1.09003 * 110.77093 * 321.56992 * 22 21 19 37 37 H 1.09000 * 110.49088 * 279.18255 * 23 22 21 38 38 H 1.09003 * 110.48692 * 156.67702 * 23 22 21 39 39 H 1.09003 * 110.03278 * 95.61019 * 24 23 22 40 40 H 1.09007 * 110.03314 * 216.98772 * 24 23 22 41 41 H 1.09004 * 110.03309 * 119.28558 * 25 24 23 42 42 H 1.09003 * 110.03477 * 240.66824 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 0.9766 0.9776 5 6 3.2992 0.6099 2.2883 6 1 3.8444 1.2522 2.9640 7 6 2.7653 -0.5881 2.7472 8 7 1.7205 -1.1139 2.1484 9 14 3.5328 -1.4510 4.2155 10 1 3.4777 -0.5566 5.3997 11 1 2.7825 -2.6997 4.5035 12 1 4.9479 -1.7822 3.9108 13 6 3.4201 2.2348 0.5887 14 8 3.8955 3.0211 1.3805 15 6 3.1496 2.6648 -0.8301 16 1 2.2993 2.1073 -1.2229 17 6 4.3833 2.3871 -1.6914 18 7 2.8480 4.0983 -0.8569 19 6 2.1056 4.6122 -1.8575 20 8 1.6868 3.8879 -2.7356 21 6 1.7959 6.0867 -1.8853 22 6 0.9048 6.4800 -0.6766 23 6 0.2151 7.7750 -1.1729 24 6 -0.0678 7.5083 -2.6657 25 6 0.9373 6.4349 -3.1187 26 1 -1.0502 -0.0001 -0.0003 27 1 3.0091 0.2679 -0.9924 28 1 3.0098 -0.9921 0.2648 29 1 1.3476 -1.9500 2.4690 30 1 5.2442 2.9070 -1.2711 31 1 4.5797 1.3150 -1.7097 32 1 4.2049 2.7413 -2.7066 33 1 3.1827 4.6774 -0.1544 34 1 2.7173 6.6692 -1.8851 35 1 1.5126 6.6799 0.2058 36 1 0.1673 5.7040 -0.4714 37 1 0.8811 8.6302 -1.0577 38 1 -0.7163 7.9425 -0.6321 39 1 -1.0869 7.1432 -2.7932 40 1 0.0759 8.4224 -3.2421 41 1 0.4061 5.5488 -3.4660 42 1 1.5691 6.8274 -3.9155 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491148109.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:11 Heat of formation + Delta-G solvation = -36.150764 kcal Electronic energy + Delta-G solvation = -23942.173569 eV Core-core repulsion = 20502.024083 eV Total energy + Delta-G solvation = -3440.149486 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.49550 -40.41306 -38.11286 -37.26895 -35.90831 -33.99070 -33.13262 -32.05979 -29.78963 -29.50528 -28.28870 -27.07409 -25.05088 -22.91291 -21.38823 -20.95205 -20.53259 -19.80877 -18.86744 -18.34330 -17.62337 -17.16429 -16.68278 -16.41498 -16.16403 -15.89556 -15.69031 -15.20252 -14.81468 -14.53935 -14.29653 -14.22159 -13.98640 -13.61328 -13.40669 -13.21422 -12.92947 -12.80495 -12.60187 -12.47061 -12.19141 -12.15843 -12.05056 -11.98013 -11.70500 -11.27162 -11.19459 -11.07094 -10.81538 -10.71751 -10.45736 -10.11006 -9.92505 -8.30681 -5.93193 1.32848 1.43631 1.52719 1.57334 1.74004 2.08143 2.21989 2.32010 2.42280 2.96638 3.12447 3.51995 3.62356 3.76310 3.82000 3.91626 4.09056 4.17823 4.27297 4.47835 4.51138 4.52629 4.59292 4.60654 4.66046 4.77565 4.80660 4.84644 4.95595 5.11264 5.11591 5.21107 5.27642 5.32204 5.37964 5.43379 5.46155 5.50346 5.96600 6.35096 6.53513 7.06475 7.18168 7.19362 7.34802 7.86104 8.60592 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.022568 B = 0.004065 C = 0.004020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.422419 B = 6887.145613 C = 6964.270437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.144 4.144 3 C 0.233 3.767 4 N -0.440 5.440 5 C -0.361 4.361 6 H 0.082 0.918 7 C 0.009 3.991 8 N -0.858 5.858 9 Si 0.982 3.018 10 H -0.278 1.278 11 H -0.275 1.275 12 H -0.267 1.267 13 C 0.437 3.563 14 O -0.616 6.616 15 C 0.137 3.863 16 H 0.085 0.915 17 C -0.146 4.146 18 N -0.705 5.705 19 C 0.517 3.483 20 O -0.578 6.578 21 C -0.108 4.108 22 C -0.118 4.118 23 C -0.116 4.116 24 C -0.121 4.121 25 C -0.111 4.111 26 H 0.226 0.774 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.273 0.727 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.411 0.589 34 H 0.125 0.875 35 H 0.081 0.919 36 H 0.049 0.951 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.084 0.916 41 H 0.056 0.944 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.971 11.178 -8.858 14.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.270 4.270 2 C -0.146 4.146 3 C 0.110 3.890 4 N -0.157 5.157 5 C -0.488 4.488 6 H 0.100 0.900 7 C -0.196 4.196 8 N -0.494 5.494 9 Si 0.806 3.194 10 H -0.203 1.203 11 H -0.200 1.200 12 H -0.192 1.192 13 C 0.226 3.774 14 O -0.503 6.503 15 C 0.028 3.972 16 H 0.103 0.897 17 C -0.205 4.205 18 N -0.357 5.357 19 C 0.305 3.695 20 O -0.458 6.458 21 C -0.129 4.129 22 C -0.156 4.156 23 C -0.154 4.154 24 C -0.158 4.158 25 C -0.149 4.149 26 H 0.243 0.757 27 H 0.114 0.886 28 H 0.109 0.891 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.248 0.752 34 H 0.143 0.857 35 H 0.100 0.900 36 H 0.068 0.932 37 H 0.105 0.895 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.103 0.897 41 H 0.075 0.925 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.143 10.821 -9.054 14.155 hybrid contribution 0.053 -0.734 1.333 1.523 sum -1.090 10.087 -7.720 12.749 Atomic orbital electron populations 1.24980 0.96297 1.01721 1.03982 1.23206 0.94884 0.99252 0.97218 1.18389 0.84854 0.94368 0.91355 1.43847 1.55039 1.08391 1.08375 1.19545 1.35988 1.06174 0.87088 0.89965 1.25970 0.94403 0.97606 1.01669 1.70239 1.17041 1.19634 1.42449 0.85178 0.78841 0.77466 0.77936 1.20301 1.19958 1.19172 1.20537 0.84554 0.82066 0.90222 1.90462 1.50705 1.52744 1.56371 1.20613 1.00102 0.83669 0.92854 0.89691 1.22031 0.95845 1.03160 0.99422 1.45856 1.53765 1.08171 1.27926 1.21256 0.76110 0.91876 0.80262 1.90640 1.53635 1.62672 1.38876 1.22309 1.02005 0.89756 0.98785 1.22582 0.98146 0.98452 0.96429 1.22342 1.00999 0.96574 0.95438 1.22142 0.98623 0.98688 0.96362 1.22068 0.97569 0.99300 0.96005 0.75689 0.88589 0.89102 0.91620 0.91563 0.90284 0.90667 0.75239 0.85666 0.89998 0.93238 0.89514 0.90805 0.92093 0.89718 0.92511 0.90253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.84 19.08 74.32 1.42 -9.42 16 2 C -0.14 -6.67 10.45 31.13 0.33 -6.35 16 3 C 0.23 10.39 4.82 84.57 0.41 10.80 16 4 N -0.44 -22.16 2.59 -645.42 -1.67 -23.83 16 5 C -0.36 -19.87 9.37 84.04 0.79 -19.08 16 6 H 0.08 4.84 7.34 -2.91 -0.02 4.82 16 7 C 0.01 0.44 4.83 84.93 0.41 0.85 16 8 N -0.86 -44.06 9.00 21.66 0.20 -43.86 16 9 Si 0.98 41.03 29.62 68.60 2.03 43.06 16 10 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 11 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 12 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 13 C 0.44 20.90 6.80 87.66 0.60 21.49 16 14 O -0.62 -32.66 15.71 -3.07 -0.05 -32.71 16 15 C 0.14 5.30 2.12 44.25 0.09 5.39 16 16 H 0.09 3.56 5.80 -2.39 -0.01 3.55 16 17 C -0.15 -4.67 9.30 71.98 0.67 -4.00 16 18 N -0.70 -24.28 5.05 -446.07 -2.25 -26.53 16 19 C 0.52 16.69 7.10 87.66 0.62 17.31 16 20 O -0.58 -22.44 15.09 -3.04 -0.05 -22.48 16 21 C -0.11 -2.48 3.25 -10.35 -0.03 -2.52 16 22 C -0.12 -2.57 6.34 32.00 0.20 -2.37 16 23 C -0.12 -1.86 6.82 31.66 0.22 -1.65 16 24 C -0.12 -2.00 6.80 31.31 0.21 -1.79 16 25 C -0.11 -2.39 6.18 31.32 0.19 -2.20 16 26 H 0.23 7.88 7.80 -4.41 -0.03 7.85 16 27 H 0.10 3.62 5.31 -2.39 -0.01 3.60 16 28 H 0.09 4.17 6.87 -2.39 -0.02 4.16 16 29 H 0.27 13.33 8.31 -92.71 -0.77 12.56 16 30 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.08 2.34 7.02 -2.39 -0.02 2.32 16 32 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.41 13.61 7.85 -92.71 -0.73 12.88 16 34 H 0.13 2.26 8.14 -2.38 -0.02 2.24 16 35 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.05 1.31 8.06 -2.39 -0.02 1.29 16 37 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 41 H 0.06 1.55 6.85 -2.39 -0.02 1.53 16 42 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -67.55 346.13 4.63 -62.92 By element: Atomic # 1 Polarization: 36.66 SS G_CDS: 0.30 Total: 36.96 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: 6.12 Total: 6.48 kcal Atomic # 7 Polarization: -90.50 SS G_CDS: -3.73 Total: -94.22 kcal Atomic # 8 Polarization: -55.10 SS G_CDS: -0.09 Total: -55.19 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.06 kcal Total: -67.55 4.63 -62.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491148109.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.768 kcal (2) G-P(sol) polarization free energy of solvation -67.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds