Wall clock time and date at job start Tue Mar 31 2020 03:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35044 * 125.53129 * 2 1 4 4 C 1.41131 * 108.23999 * 179.73562 * 3 2 1 5 5 N 1.32988 * 126.37510 * 180.02562 * 4 3 2 6 6 C 1.33861 * 120.00277 * 359.97137 * 5 4 3 7 7 O 1.21916 * 120.00169 * 0.02562 * 6 5 4 8 8 C 1.47446 * 120.00359 * 180.02562 * 6 5 4 9 9 C 1.32848 * 120.00559 * 190.23378 * 8 6 5 10 10 C 1.50707 * 119.99549 * 10.64068 * 9 8 6 11 11 N 1.46904 * 109.46513 * 137.16053 * 10 9 8 12 12 C 1.46903 * 110.99549 * 170.00293 * 11 10 9 13 13 C 1.46900 * 110.99983 * 293.95417 * 11 10 9 14 14 N 1.37433 * 107.24747 * 359.97438 * 4 3 2 15 15 H 0.97002 * 126.36155 * 179.97438 * 14 4 3 16 16 N 1.36400 * 125.52658 * 179.68619 * 2 1 3 17 17 C 1.46499 * 125.85496 * 0.25124 * 16 2 1 18 18 C 1.50699 * 109.47299 * 84.99428 * 17 16 2 19 19 H 1.07996 * 120.00082 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99910 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99884 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 120.00024 * 0.02562 * 20 18 17 23 23 H 1.48505 * 109.47240 * 89.99861 * 22 20 18 24 24 H 1.48505 * 109.47360 * 209.99721 * 22 20 18 25 25 H 1.48496 * 109.47286 * 329.99570 * 22 20 18 26 26 H 1.08998 * 109.46853 * 90.02780 * 1 2 3 27 27 H 1.08993 * 109.47438 * 210.02797 * 1 2 3 28 28 H 1.09006 * 109.46765 * 330.02970 * 1 2 3 29 29 H 1.07999 * 125.88464 * 359.75410 * 3 2 1 30 30 H 1.08004 * 120.00144 * 10.22782 * 8 6 5 31 31 H 1.07996 * 120.00652 * 190.64519 * 9 8 6 32 32 H 1.08997 * 109.47396 * 257.15976 * 10 9 8 33 33 H 1.08999 * 109.46764 * 17.16266 * 10 9 8 34 34 H 1.09002 * 109.47084 * 59.99706 * 12 11 10 35 35 H 1.09002 * 109.46558 * 179.97438 * 12 11 10 36 36 H 1.08994 * 109.47209 * 299.99561 * 12 11 10 37 37 H 1.08994 * 109.47409 * 60.00199 * 13 11 10 38 38 H 1.08997 * 109.47114 * 180.02562 * 13 11 10 39 39 H 1.09005 * 109.47287 * 300.00082 * 13 11 10 40 40 H 1.09000 * 109.46828 * 204.99611 * 17 16 2 41 41 H 1.09002 * 109.47105 * 324.99240 * 17 16 2 42 42 H 0.97001 * 119.99769 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2918 1.0990 0.0000 4 6 3.6394 0.6795 0.0062 5 7 4.7107 1.4674 0.0086 6 6 4.5631 2.7979 0.0044 7 8 3.4465 3.2874 -0.0011 8 6 5.7509 3.6715 0.0065 9 6 5.6145 4.9777 0.2068 10 6 4.2923 5.5353 0.6675 11 7 4.5229 6.5428 1.7115 12 6 3.2873 7.2759 2.0175 13 6 5.0837 5.9277 2.9219 14 7 3.6383 -0.6948 0.0105 15 1 4.4190 -1.2705 0.0147 16 7 2.2996 -1.1101 0.0061 17 6 1.8319 -2.4984 0.0085 18 6 1.5591 -2.9390 -1.4066 19 1 1.7178 -2.2534 -2.2258 20 6 1.1069 -4.2175 -1.6554 21 7 0.8683 -4.6019 -2.8903 22 14 0.8317 -5.4032 -0.2385 23 1 -0.5636 -5.2722 0.2528 24 1 1.0639 -6.7940 -0.7045 25 1 1.7761 -5.0862 0.8628 26 1 -0.3633 -0.0005 -1.0277 27 1 -0.3634 -0.8897 0.5142 28 1 -0.3633 0.8903 0.5134 29 1 1.9477 2.1227 -0.0038 30 1 6.7319 3.2495 -0.1548 31 1 6.4510 5.6400 0.0396 32 1 3.7790 5.9970 -0.1760 33 1 3.6784 4.7294 1.0695 34 1 2.5275 6.5772 2.3677 35 1 3.4862 8.0150 2.7936 36 1 2.9314 7.7793 1.1186 37 1 6.0336 5.4509 2.6806 38 1 5.2441 6.6955 3.6787 39 1 4.3889 5.1802 3.3049 40 1 2.5971 -3.1387 0.4473 41 1 0.9161 -2.5723 0.5950 42 1 0.5498 -5.5013 -3.0653 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492323435.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:21 Heat of formation + Delta-G solvation = 98.607439 kcal Electronic energy + Delta-G solvation = -22857.178151 eV Core-core repulsion = 19455.164970 eV Total energy + Delta-G solvation = -3402.013181 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.03759 -38.96456 -37.19182 -34.53341 -33.19943 -32.86978 -32.28896 -31.07687 -27.74150 -27.62079 -27.54962 -26.70803 -23.60807 -22.45112 -21.55122 -20.55008 -19.71745 -18.18265 -17.48874 -17.06863 -16.28862 -15.35559 -15.26496 -15.13517 -15.10331 -14.66251 -14.24400 -13.82227 -13.64495 -13.29558 -13.00423 -12.93938 -12.76026 -12.67488 -12.42028 -12.36616 -12.02872 -11.95501 -11.74490 -11.67499 -11.41866 -11.19219 -11.06282 -10.70955 -10.08624 -9.58268 -9.40127 -9.08718 -9.05995 -8.97042 -8.60074 -7.98171 -6.96745 -6.55610 -4.64310 1.32445 1.88107 2.10442 2.92304 2.96969 3.03814 3.07808 3.93378 4.08283 4.08361 4.57588 4.71329 4.84959 4.91423 5.13047 5.16271 5.39118 5.40533 5.46400 5.59663 5.61073 5.72916 5.73629 5.81022 5.85965 5.92165 5.96011 6.02402 6.10143 6.18281 6.20976 6.38601 6.57157 6.67912 6.75934 6.88631 7.05352 7.15346 7.35811 7.52691 7.80177 7.99909 8.23718 8.47818 8.96554 9.29006 10.55875 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.032804 B = 0.002961 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.358756 B = 9452.884384 C = 9723.510572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.193 3.807 3 C -0.331 4.331 4 C 0.473 3.527 5 N -0.694 5.694 6 C 0.517 3.483 7 O -0.577 6.577 8 C -0.167 4.167 9 C -0.091 4.091 10 C 0.060 3.940 11 N -0.553 5.553 12 C 0.027 3.973 13 C 0.026 3.974 14 N -0.467 5.467 15 H 0.446 0.554 16 N -0.339 5.339 17 C 0.227 3.773 18 C -0.563 4.563 19 H 0.085 0.915 20 C 0.085 3.915 21 N -0.875 5.875 22 Si 0.872 3.128 23 H -0.268 1.268 24 H -0.277 1.277 25 H -0.265 1.265 26 H 0.094 0.906 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.184 0.816 30 H 0.125 0.875 31 H 0.120 0.880 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.025 0.975 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.024 0.976 40 H 0.049 0.951 41 H 0.059 0.941 42 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.655 12.273 9.801 15.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.067 3.933 3 C -0.363 4.363 4 C 0.223 3.777 5 N -0.457 5.457 6 C 0.306 3.694 7 O -0.462 6.462 8 C -0.188 4.188 9 C -0.111 4.111 10 C -0.066 4.066 11 N -0.278 5.278 12 C -0.121 4.121 13 C -0.123 4.123 14 N -0.189 5.189 15 H 0.293 0.707 16 N -0.125 5.125 17 C 0.110 3.890 18 C -0.601 4.601 19 H 0.103 0.897 20 C -0.122 4.122 21 N -0.510 5.510 22 Si 0.698 3.302 23 H -0.193 1.193 24 H -0.202 1.202 25 H -0.190 1.190 26 H 0.113 0.887 27 H 0.097 0.903 28 H 0.106 0.894 29 H 0.201 0.799 30 H 0.143 0.857 31 H 0.138 0.862 32 H 0.100 0.900 33 H 0.108 0.892 34 H 0.044 0.956 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.043 0.957 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.168 12.026 9.492 15.645 hybrid contribution -0.671 -1.527 0.689 1.804 sum 2.498 10.500 10.181 14.837 Atomic orbital electron populations 1.20622 0.86229 1.03746 1.04644 1.21351 0.94500 0.85434 0.92042 1.22276 0.91170 1.00273 1.22563 1.19183 0.91742 0.82078 0.84657 1.68971 1.27931 1.05335 1.43423 1.19272 0.87857 0.86068 0.76203 1.90511 1.27513 1.78541 1.49625 1.22494 0.98594 0.93398 1.04349 1.23422 0.98570 0.94678 0.94459 1.21832 0.95498 0.94554 0.94720 1.61960 1.28278 1.28232 1.09311 1.22313 0.90658 0.97748 1.01381 1.22358 0.99835 0.98140 0.91932 1.44487 0.98524 1.05289 1.70601 0.70680 1.47375 0.93064 1.07512 1.64538 1.20324 0.95952 0.72484 1.00274 1.21200 1.48363 0.99914 0.90584 0.89674 1.24811 0.93998 0.97499 0.95884 1.69854 1.42633 1.19540 1.18990 0.86920 0.79586 0.81385 0.82308 1.19288 1.20207 1.18979 0.88734 0.90315 0.89420 0.79868 0.85747 0.86176 0.90013 0.89224 0.95603 0.91802 0.91509 0.91381 0.91927 0.95739 0.93346 0.92326 0.91670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.26 10.09 36.01 0.36 -0.90 16 2 C 0.19 3.32 6.93 -81.69 -0.57 2.76 16 3 C -0.33 -6.18 9.41 -39.62 -0.37 -6.55 16 4 C 0.47 9.20 8.07 -155.26 -1.25 7.95 16 5 N -0.69 -13.76 10.52 -12.34 -0.13 -13.89 16 6 C 0.52 9.88 7.44 -12.92 -0.10 9.79 16 7 O -0.58 -11.58 10.25 5.00 0.05 -11.53 16 8 C -0.17 -2.59 10.12 -37.69 -0.38 -2.97 16 9 C -0.09 -1.25 8.68 -36.16 -0.31 -1.56 16 10 C 0.06 0.85 4.33 -4.97 -0.02 0.83 16 11 N -0.55 -6.88 5.01 -252.72 -1.27 -8.15 16 12 C 0.03 0.29 9.57 60.07 0.57 0.86 16 13 C 0.03 0.29 9.37 60.06 0.56 0.86 16 14 N -0.47 -8.34 7.38 31.33 0.23 -8.11 16 15 H 0.45 6.92 8.96 -182.55 -1.64 5.29 16 16 N -0.34 -6.24 3.63 -58.03 -0.21 -6.45 16 17 C 0.23 4.39 5.00 -5.19 -0.03 4.36 16 18 C -0.56 -13.51 9.94 -34.44 -0.34 -13.85 16 19 H 0.09 2.36 8.06 -52.49 -0.42 1.94 16 20 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 21 N -0.87 -23.66 13.96 55.43 0.77 -22.89 16 22 Si 0.87 17.69 27.47 -169.99 -4.67 13.02 16 23 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 24 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 25 H -0.27 -5.02 6.54 56.52 0.37 -4.65 16 26 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.08 0.99 7.13 -51.93 -0.37 0.62 16 28 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.18 3.51 5.77 -52.49 -0.30 3.21 16 30 H 0.12 1.73 8.06 -52.48 -0.42 1.31 16 31 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 32 H 0.08 1.18 8.06 -51.93 -0.42 0.76 16 33 H 0.09 1.53 5.16 -51.94 -0.27 1.26 16 34 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.06 0.57 8.12 -51.93 -0.42 0.15 16 36 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 37 H 0.07 0.77 7.28 -51.93 -0.38 0.39 16 38 H 0.06 0.59 8.12 -51.93 -0.42 0.17 16 39 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 40 H 0.05 0.90 7.20 -51.93 -0.37 0.53 16 41 H 0.06 1.04 6.60 -51.93 -0.34 0.69 16 42 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 348.97 15.07 5.26 5.26 Total: -1.00 -29.49 348.97 -9.41 -38.90 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -7.48 Total: 10.28 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -1.97 Total: 3.56 kcal Atomic # 7 Polarization: -58.88 SS G_CDS: -0.60 Total: -59.48 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.05 Total: -11.53 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -4.67 Total: 13.02 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.49 -9.41 -38.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492323435.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.508 kcal (2) G-P(sol) polarization free energy of solvation -29.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds