Wall clock time and date at job start Tue Mar 31 2020 03:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39763 * 125.83628 * 2 1 4 4 C 1.36109 * 107.82671 * 180.14465 * 3 2 1 5 5 N 1.39466 * 126.21854 * 179.90854 * 4 3 2 6 6 C 1.34784 * 119.99921 * 359.68643 * 5 4 3 7 7 O 1.21296 * 119.99754 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00170 * 180.02562 * 6 5 4 9 9 H 1.09003 * 110.76248 * 56.79989 * 8 6 5 10 10 C 1.55138 * 110.70648 * 179.97438 * 8 6 5 11 11 C 1.54908 * 101.68619 * 154.02039 * 10 8 6 12 12 N 1.47887 * 104.77420 * 322.97931 * 11 10 8 13 13 C 1.46907 * 111.01481 * 146.33028 * 12 11 10 14 14 C 1.47444 * 108.58784 * 24.04325 * 12 11 10 15 15 N 1.35263 * 107.56580 * 359.64048 * 4 3 2 16 16 C 1.46498 * 126.04780 * 180.22471 * 15 4 3 17 17 C 1.50699 * 109.46969 * 90.00106 * 16 15 4 18 18 H 1.07999 * 120.00373 * 0.02562 * 17 16 15 19 19 C 1.37885 * 120.00274 * 180.02562 * 17 16 15 20 20 N 1.31504 * 120.00236 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 119.99662 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47066 * 89.99997 * 21 19 17 23 23 H 1.48496 * 109.47274 * 210.00273 * 21 19 17 24 24 H 1.48507 * 109.47317 * 330.00382 * 21 19 17 25 25 N 1.30840 * 125.84036 * 179.74483 * 2 1 3 26 26 H 1.09002 * 109.47251 * 270.23568 * 1 2 3 27 27 H 1.08997 * 109.47490 * 30.23224 * 1 2 3 28 28 H 1.08996 * 109.47188 * 150.23135 * 1 2 3 29 29 H 1.08003 * 126.08629 * 0.03610 * 3 2 1 30 30 H 0.96998 * 120.00378 * 179.69160 * 5 4 3 31 31 H 1.09002 * 110.99302 * 272.13040 * 10 8 6 32 32 H 1.08995 * 110.99003 * 35.90927 * 10 8 6 33 33 H 1.08993 * 110.37866 * 81.77867 * 11 10 8 34 34 H 1.09005 * 110.37455 * 204.12444 * 11 10 8 35 35 H 1.08991 * 109.47068 * 299.12577 * 13 12 11 36 36 H 1.09002 * 109.46591 * 59.12472 * 13 12 11 37 37 H 1.08997 * 109.47034 * 179.12322 * 13 12 11 38 38 H 1.08998 * 109.89066 * 239.63908 * 14 12 11 39 39 H 1.09001 * 109.89084 * 118.44467 * 14 12 11 40 40 H 1.08998 * 109.47775 * 210.00319 * 16 15 4 41 41 H 1.09005 * 109.47344 * 330.00876 * 16 15 4 42 42 H 0.97000 * 120.00159 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1331 0.0000 4 6 3.6197 0.7122 -0.0033 5 7 4.7512 1.5275 -0.0062 6 6 4.6156 2.8685 -0.0123 7 8 3.5095 3.3662 -0.0157 8 6 5.8383 3.7495 -0.0160 9 1 6.4782 3.5187 -0.8677 10 6 5.4349 5.2475 -0.0235 11 6 6.6699 5.9082 0.6384 12 7 7.0973 4.9497 1.6803 13 6 8.5575 4.9623 1.8406 14 6 6.6182 3.6060 1.3078 15 7 3.6092 -0.6403 0.0028 16 6 4.7870 -1.5115 0.0067 17 6 5.1909 -1.8038 1.4288 18 1 4.6265 -1.3831 2.2479 19 6 6.2811 -2.6084 1.6845 20 7 6.6332 -2.8639 2.9254 21 14 7.2569 -3.3367 0.2679 22 1 8.3477 -2.4039 -0.1130 23 1 7.8406 -4.6367 0.6855 24 1 6.3581 -3.5485 -0.8952 25 7 2.2731 -1.0606 0.0047 26 1 -0.3634 0.0042 1.0277 27 1 -0.3634 0.8878 -0.5174 28 1 -0.3633 -0.8920 -0.5102 29 1 1.9901 2.1598 0.0005 30 1 5.6358 1.1295 -0.0039 31 1 5.2974 5.6097 -1.0423 32 1 4.5373 5.4131 0.5721 33 1 7.4635 6.0496 -0.0952 34 1 6.3942 6.8617 1.0891 35 1 9.0286 4.6712 0.9018 36 1 8.8842 5.9653 2.1153 37 1 8.8432 4.2599 2.6236 38 1 5.9604 3.2180 2.0855 39 1 7.4662 2.9356 1.1678 40 1 4.5499 -2.4454 -0.5029 41 1 5.6084 -1.0144 -0.5093 42 1 7.3999 -3.4303 3.1053 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000520312569.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:23 Heat of formation + Delta-G solvation = 27.207722 kcal Electronic energy + Delta-G solvation = -23668.577970 eV Core-core repulsion = 20263.468665 eV Total energy + Delta-G solvation = -3405.109305 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.52779 -41.11030 -39.18813 -36.32787 -35.58505 -34.01205 -33.29570 -31.22123 -30.55657 -29.45449 -28.02947 -26.84671 -24.64042 -23.96259 -22.10082 -21.91533 -21.24470 -20.50994 -19.27782 -18.59454 -18.02197 -17.20494 -16.87102 -16.55064 -16.14798 -15.85099 -15.44796 -15.05780 -14.96267 -14.79454 -14.43495 -14.39254 -14.17997 -13.83694 -13.54653 -13.52223 -13.18811 -12.98264 -12.84519 -12.62170 -12.56089 -12.31243 -12.20541 -12.14342 -11.88293 -11.83773 -11.78384 -11.47447 -10.93140 -10.91284 -9.64415 -9.33758 -9.10640 -8.43567 -6.56452 0.72449 1.25121 1.30909 1.37469 1.46068 1.58349 2.01196 2.15827 2.23330 2.87651 2.96313 3.28861 3.46346 3.76016 3.78423 4.05931 4.21597 4.25616 4.33596 4.41944 4.45144 4.53356 4.56601 4.64938 4.66262 4.81966 4.85982 4.87330 4.92491 4.96934 4.99906 5.06782 5.12041 5.17560 5.20321 5.23923 5.85169 5.89350 5.96154 6.07581 6.16582 6.30881 6.47838 6.89243 6.96937 7.08518 8.72899 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.010655 B = 0.005852 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2627.324167 B = 4783.596450 C = 6918.319076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.061 3.939 3 C -0.307 4.307 4 C 0.301 3.699 5 N -0.638 5.638 6 C 0.531 3.469 7 O -0.535 6.535 8 C -0.117 4.117 9 H 0.138 0.862 10 C -0.106 4.106 11 C 0.045 3.955 12 N -0.552 5.552 13 C 0.018 3.982 14 C 0.052 3.948 15 N -0.366 5.366 16 C 0.239 3.761 17 C -0.554 4.554 18 H 0.021 0.979 19 C 0.026 3.974 20 N -0.933 5.933 21 Si 0.948 3.052 22 H -0.244 1.244 23 H -0.279 1.279 24 H -0.247 1.247 25 N -0.328 5.328 26 H 0.082 0.918 27 H 0.097 0.903 28 H 0.077 0.923 29 H 0.168 0.832 30 H 0.421 0.579 31 H 0.100 0.900 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.041 0.959 36 H 0.082 0.918 37 H 0.063 0.937 38 H 0.055 0.945 39 H 0.079 0.921 40 H 0.052 0.948 41 H 0.067 0.933 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.163 16.149 -9.911 19.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.105 4.105 3 C -0.339 4.339 4 C 0.078 3.922 5 N -0.286 5.286 6 C 0.319 3.681 7 O -0.409 6.409 8 C -0.139 4.139 9 H 0.156 0.844 10 C -0.144 4.144 11 C -0.082 4.082 12 N -0.276 5.276 13 C -0.130 4.130 14 C -0.076 4.076 15 N -0.152 5.152 16 C 0.119 3.881 17 C -0.592 4.592 18 H 0.040 0.960 19 C -0.175 4.175 20 N -0.571 5.571 21 Si 0.769 3.231 22 H -0.167 1.167 23 H -0.205 1.205 24 H -0.171 1.171 25 N -0.153 5.153 26 H 0.100 0.900 27 H 0.116 0.884 28 H 0.096 0.904 29 H 0.185 0.815 30 H 0.259 0.741 31 H 0.118 0.882 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.110 0.890 35 H 0.060 0.940 36 H 0.101 0.899 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.097 0.903 40 H 0.070 0.930 41 H 0.084 0.916 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.516 15.259 -9.299 18.046 hybrid contribution 1.248 -0.560 -0.342 1.410 sum 3.764 14.699 -9.641 17.977 Atomic orbital electron populations 1.20236 0.83870 1.04248 1.03636 1.22894 0.98780 0.90044 0.98747 1.21494 0.89161 1.00852 1.22356 1.18342 0.89712 0.82784 1.01328 1.43031 1.07425 1.06047 1.72065 1.21101 0.92133 0.80523 0.74304 1.90610 1.28168 1.73867 1.48292 1.22635 0.93599 0.95976 1.01669 0.84432 1.22637 0.98687 0.90216 1.02862 1.23161 0.96224 0.96359 0.92430 1.63530 1.13689 1.04984 1.45439 1.22618 0.85967 1.03383 1.01066 1.22744 0.98902 0.92098 0.93889 1.48822 1.06127 1.02703 1.57505 1.19745 0.80525 0.90701 0.97135 1.21207 1.14070 1.33049 0.90906 0.96049 1.25820 0.97561 0.95116 0.98972 1.70031 1.27806 1.37750 1.21523 0.85717 0.79527 0.78967 0.78878 1.16732 1.20468 1.17102 1.77295 0.86271 1.23503 1.28250 0.89973 0.88418 0.90386 0.81481 0.74130 0.88192 0.91239 0.91093 0.89020 0.94036 0.89936 0.91803 0.92696 0.90293 0.93030 0.91562 0.91632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.73 10.44 71.24 0.74 -0.99 16 2 C 0.06 2.43 7.21 43.07 0.31 2.74 16 3 C -0.31 -12.56 9.58 22.14 0.21 -12.35 16 4 C 0.30 12.62 7.66 131.32 1.01 13.62 16 5 N -0.64 -21.54 5.41 -308.56 -1.67 -23.21 16 6 C 0.53 15.98 6.96 87.65 0.61 16.59 16 7 O -0.53 -19.01 12.83 -3.08 -0.04 -19.05 16 8 C -0.12 -2.42 3.34 -10.36 -0.03 -2.46 16 9 H 0.14 2.01 8.14 -2.39 -0.02 1.99 16 10 C -0.11 -1.96 6.17 31.98 0.20 -1.77 16 11 C 0.05 0.71 6.73 86.77 0.58 1.29 16 12 N -0.55 -11.27 5.44 -911.57 -4.96 -16.23 16 13 C 0.02 0.28 9.12 127.69 1.16 1.45 16 14 C 0.05 1.19 6.48 86.65 0.56 1.75 16 15 N -0.37 -17.08 3.60 -348.72 -1.26 -18.34 16 16 C 0.24 11.14 5.07 85.63 0.43 11.58 16 17 C -0.55 -31.16 9.94 25.60 0.25 -30.90 16 18 H 0.02 1.42 8.06 -2.91 -0.02 1.39 16 19 C 0.03 1.41 5.47 84.66 0.46 1.87 16 20 N -0.93 -55.52 13.96 21.45 0.30 -55.22 16 21 Si 0.95 39.13 27.47 68.60 1.88 41.01 16 22 H -0.24 -8.96 7.11 99.48 0.71 -8.25 16 23 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 24 H -0.25 -9.55 6.54 99.48 0.65 -8.89 16 25 N -0.33 -15.41 12.56 -47.45 -0.60 -16.00 16 26 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.17 6.62 5.83 -2.91 -0.02 6.61 16 30 H 0.42 12.67 7.96 -92.71 -0.74 11.93 16 31 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.07 1.65 7.40 -2.39 -0.02 1.63 16 33 H 0.07 0.83 7.78 -2.39 -0.02 0.81 16 34 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 35 H 0.04 0.56 8.10 -2.39 -0.02 0.54 16 36 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.05 1.60 7.81 -2.39 -0.02 1.58 16 39 H 0.08 1.60 7.58 -2.39 -0.02 1.58 16 40 H 0.05 2.42 7.20 -2.39 -0.02 2.41 16 41 H 0.07 2.63 6.93 -2.38 -0.02 2.62 16 42 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -74.45 344.33 0.40 -74.05 By element: Atomic # 1 Polarization: 30.33 SS G_CDS: 0.23 Total: 30.57 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: 6.51 Total: 2.42 kcal Atomic # 7 Polarization: -120.81 SS G_CDS: -8.19 Total: -129.00 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.04 Total: -19.05 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 1.88 Total: 41.01 kcal Total: -74.45 0.40 -74.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520312569.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.254 kcal (2) G-P(sol) polarization free energy of solvation -74.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds