Wall clock time and date at job start Tue Mar 31 2020 03:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35122 * 125.55060 * 2 1 4 4 C 1.40982 * 108.23759 * 180.02562 * 3 2 1 5 5 N 1.33308 * 126.35867 * 180.02562 * 4 3 2 6 6 C 1.32914 * 119.99399 * 359.96788 * 5 4 3 7 7 O 1.21587 * 120.00394 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.99588 * 180.02562 * 6 5 4 9 9 H 1.09006 * 110.62807 * 61.65686 * 8 6 5 10 10 C 1.55141 * 110.70898 * 184.94776 * 8 6 5 11 11 C 1.54910 * 101.65629 * 154.03500 * 10 8 6 12 12 N 1.47841 * 104.79547 * 322.93761 * 11 10 8 13 13 C 1.46900 * 110.99999 * 146.36426 * 12 11 10 14 14 C 1.47437 * 108.57185 * 24.09295 * 12 11 10 15 15 N 1.37282 * 107.28628 * 359.75566 * 4 3 2 16 16 H 0.97004 * 126.34757 * 180.25837 * 15 4 3 17 17 N 1.36332 * 125.54567 * 180.02562 * 2 1 3 18 18 C 1.46498 * 125.86868 * 359.95464 * 17 2 1 19 19 C 1.50695 * 109.46983 * 85.00117 * 18 17 2 20 20 H 1.07999 * 120.00538 * 359.97438 * 19 18 17 21 21 C 1.37881 * 119.99661 * 180.02562 * 19 18 17 22 22 N 1.31520 * 120.00186 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00030 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47297 * 89.99863 * 23 21 19 25 25 H 1.48503 * 109.47261 * 330.00044 * 23 21 19 26 26 H 1.48500 * 109.47454 * 210.00037 * 23 21 19 27 27 H 1.08995 * 109.46910 * 269.97115 * 1 2 3 28 28 H 1.09002 * 109.46933 * 29.97225 * 1 2 3 29 29 H 1.08999 * 109.47115 * 149.97429 * 1 2 3 30 30 H 1.07993 * 125.88047 * 0.02890 * 3 2 1 31 31 H 1.08997 * 110.99474 * 272.13337 * 10 8 6 32 32 H 1.09011 * 110.98420 * 35.94821 * 10 8 6 33 33 H 1.08993 * 110.37496 * 204.10525 * 11 10 8 34 34 H 1.08999 * 110.45935 * 81.81229 * 11 10 8 35 35 H 1.09009 * 109.46823 * 299.14989 * 13 12 11 36 36 H 1.08997 * 109.47465 * 59.15388 * 13 12 11 37 37 H 1.09005 * 109.47168 * 179.15503 * 13 12 11 38 38 H 1.09005 * 109.89162 * 239.60871 * 14 12 11 39 39 H 1.08996 * 109.89224 * 118.41684 * 14 12 11 40 40 H 1.09002 * 109.46847 * 324.99815 * 18 17 2 41 41 H 1.09000 * 109.46849 * 205.00195 * 18 17 2 42 42 H 0.97001 * 119.99697 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2927 1.0994 0.0000 4 6 3.6386 0.6798 -0.0006 5 7 4.7126 1.4695 -0.0003 6 6 4.5659 2.7906 0.0000 7 8 3.4524 3.2787 0.0005 8 6 5.7800 3.6833 -0.0003 9 1 6.3760 3.5208 -0.8984 10 6 5.3655 5.1731 0.1253 11 6 6.6286 5.7961 0.7704 12 7 7.1163 4.7683 1.7146 13 6 8.5827 4.7858 1.8003 14 6 6.6289 3.4507 1.2673 15 7 3.6380 -0.6930 0.0046 16 1 4.4190 -1.2683 0.0091 17 7 2.2996 -1.1093 -0.0005 18 6 1.8327 -2.4979 -0.0002 19 6 1.5543 -2.9345 -1.4154 20 1 1.7093 -2.2464 -2.2332 21 6 1.1008 -4.2122 -1.6660 22 7 0.9116 -5.0501 -0.6700 23 14 0.7551 -4.7534 -3.4201 24 1 1.9852 -5.3418 -4.0082 25 1 0.3335 -3.5796 -4.2263 26 1 -0.3284 -5.7689 -3.4205 27 1 -0.3633 -0.0005 1.0276 28 1 -0.3633 0.8903 -0.5134 29 1 -0.3633 -0.8897 -0.5142 30 1 1.9488 2.1231 0.0004 31 1 5.1724 5.6087 -0.8550 32 1 4.4990 5.2835 0.7776 33 1 6.3702 6.7102 1.3048 34 1 7.3825 6.0017 0.0106 35 1 9.0066 4.5708 0.8193 36 1 8.9156 5.7691 2.1325 37 1 8.9140 4.0302 2.5128 38 1 6.0153 2.9982 2.0465 39 1 7.4735 2.8024 1.0342 40 1 0.9194 -2.5739 0.5899 41 1 2.6000 -3.1390 0.4337 42 1 1.0915 -4.7692 0.2409 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000536609792.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:28 Heat of formation + Delta-G solvation = 61.900694 kcal Electronic energy + Delta-G solvation = -23070.997017 eV Core-core repulsion = 19667.392112 eV Total energy + Delta-G solvation = -3403.604905 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.07324 -39.48016 -37.69738 -34.65569 -33.33852 -32.37960 -32.02186 -30.69172 -29.02169 -27.64822 -26.49783 -25.73559 -23.55090 -22.57697 -21.02530 -20.79872 -19.81891 -18.90685 -17.70326 -16.76924 -16.29754 -15.78731 -15.58381 -15.23397 -14.59285 -14.27614 -14.01883 -13.89455 -13.64865 -13.32887 -13.13400 -12.99472 -12.83744 -12.69023 -12.30345 -12.12112 -12.00670 -11.79690 -11.61128 -11.37696 -11.19479 -10.99942 -10.98479 -10.67224 -10.39524 -10.21568 -9.31478 -9.15745 -8.97426 -8.90643 -8.43124 -8.34113 -7.11455 -6.83191 -4.73598 1.52327 1.90243 2.85744 3.18171 3.20766 3.37166 3.97076 4.07586 4.14856 4.22800 4.63299 4.72047 4.82202 4.89710 5.03812 5.19508 5.28984 5.36096 5.44022 5.45832 5.57713 5.64029 5.70870 5.73329 5.73632 5.89860 6.00925 6.01866 6.07611 6.21350 6.23047 6.25782 6.37784 6.52181 6.64913 6.90397 7.02206 7.22552 7.34637 7.51720 7.76550 7.98807 8.22633 8.26411 8.97107 9.31089 10.44531 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.030696 B = 0.002993 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.955353 B = 9353.483993 C = 9609.131037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.191 3.809 3 C -0.331 4.331 4 C 0.472 3.528 5 N -0.701 5.701 6 C 0.505 3.495 7 O -0.583 6.583 8 C -0.102 4.102 9 H 0.090 0.910 10 C -0.111 4.111 11 C 0.040 3.960 12 N -0.538 5.538 13 C 0.021 3.979 14 C 0.066 3.934 15 N -0.466 5.466 16 H 0.445 0.555 17 N -0.337 5.337 18 C 0.244 3.756 19 C -0.634 4.634 20 H 0.065 0.935 21 C 0.032 3.968 22 N -0.893 5.893 23 Si 1.077 2.923 24 H -0.283 1.283 25 H -0.284 1.284 26 H -0.279 1.279 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.185 0.815 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.044 0.956 35 H 0.026 0.974 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.041 0.959 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.377 12.339 2.666 14.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.064 3.936 3 C -0.363 4.363 4 C 0.224 3.776 5 N -0.465 5.465 6 C 0.290 3.710 7 O -0.465 6.465 8 C -0.125 4.125 9 H 0.109 0.891 10 C -0.150 4.150 11 C -0.087 4.087 12 N -0.263 5.263 13 C -0.128 4.128 14 C -0.062 4.062 15 N -0.188 5.188 16 H 0.292 0.708 17 N -0.123 5.123 18 C 0.127 3.873 19 C -0.672 4.672 20 H 0.083 0.917 21 C -0.175 4.175 22 N -0.527 5.527 23 Si 0.903 3.097 24 H -0.210 1.210 25 H -0.210 1.210 26 H -0.204 1.204 27 H 0.102 0.898 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.202 0.798 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.063 0.937 35 H 0.045 0.955 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.059 0.941 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.922 10.755 2.279 12.488 hybrid contribution 0.961 0.896 0.058 1.315 sum 6.883 11.651 2.336 13.732 Atomic orbital electron populations 1.20666 0.86292 1.05182 1.03659 1.21382 0.94560 0.85463 0.92167 1.22290 0.91185 1.00303 1.22500 1.19228 0.91800 0.82018 0.84591 1.68755 1.27965 1.05503 1.44243 1.20396 0.88660 0.86263 0.75718 1.90522 1.27165 1.79237 1.49605 1.22080 0.96197 0.94649 0.99542 0.89133 1.22603 0.97915 0.93093 1.01369 1.23085 0.96250 0.95702 0.93683 1.63605 1.09808 1.04579 1.48276 1.22529 0.87852 1.02276 1.00137 1.22605 0.98079 0.90052 0.95435 1.44501 0.98697 1.05332 1.70232 0.70771 1.47601 0.92928 1.07830 1.63946 1.20065 0.95646 0.71430 1.00145 1.22268 1.51838 1.01767 0.91335 0.91698 1.25971 0.92821 0.92185 1.06477 1.70857 1.43759 1.37561 1.00494 0.83403 0.77377 0.76108 0.72828 1.20975 1.20980 1.20407 0.89781 0.89111 0.89054 0.79847 0.90853 0.89493 0.90284 0.93743 0.95549 0.91634 0.91448 0.90306 0.92163 0.92496 0.94113 0.92039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.40 9.92 36.01 0.36 -1.04 16 2 C 0.19 3.41 6.93 -81.70 -0.57 2.84 16 3 C -0.33 -6.37 9.41 -39.65 -0.37 -6.74 16 4 C 0.47 9.33 8.07 -155.18 -1.25 8.07 16 5 N -0.70 -13.82 10.44 -11.59 -0.12 -13.94 16 6 C 0.50 9.73 6.90 -11.81 -0.08 9.65 16 7 O -0.58 -12.38 12.67 5.29 0.07 -12.31 16 8 C -0.10 -1.57 3.41 -89.95 -0.31 -1.88 16 9 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 10 C -0.11 -1.52 6.13 -24.59 -0.15 -1.67 16 11 C 0.04 0.46 6.73 -2.30 -0.02 0.45 16 12 N -0.54 -6.84 5.44 -239.52 -1.30 -8.15 16 13 C 0.02 0.21 9.12 60.06 0.55 0.75 16 14 C 0.07 0.94 6.44 -2.84 -0.02 0.92 16 15 N -0.47 -8.52 7.37 31.32 0.23 -8.29 16 16 H 0.45 7.14 8.96 -182.55 -1.64 5.50 16 17 N -0.34 -6.43 3.63 -58.03 -0.21 -6.64 16 18 C 0.24 5.05 5.02 -5.20 -0.03 5.03 16 19 C -0.63 -15.09 9.39 -34.44 -0.32 -15.41 16 20 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 21 C 0.03 0.79 5.46 -17.82 -0.10 0.70 16 22 N -0.89 -23.15 13.65 55.43 0.76 -22.40 16 23 Si 1.08 22.23 29.90 -169.99 -5.08 17.14 16 24 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 25 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 26 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 27 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 29 H 0.09 1.39 7.80 -51.93 -0.41 0.98 16 30 H 0.18 3.66 5.77 -52.49 -0.30 3.36 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.09 1.34 7.49 -51.92 -0.39 0.95 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.04 0.45 7.78 -51.93 -0.40 0.05 16 35 H 0.03 0.25 8.10 -51.92 -0.42 -0.17 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.08 1.26 7.81 -51.93 -0.41 0.86 16 39 H 0.06 0.80 7.58 -51.93 -0.39 0.41 16 40 H 0.06 1.16 7.75 -51.93 -0.40 0.76 16 41 H 0.04 0.86 8.01 -51.93 -0.42 0.44 16 42 H 0.27 6.77 7.22 -40.82 -0.29 6.47 16 LS Contribution 346.44 15.07 5.22 5.22 Total: -1.00 -29.04 346.44 -10.38 -39.43 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -7.64 Total: 8.27 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -2.31 Total: 1.67 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: -0.65 Total: -59.42 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: 0.07 Total: -12.31 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.08 Total: 17.14 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.04 -10.38 -39.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000536609792.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.327 kcal (2) G-P(sol) polarization free energy of solvation -29.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds