Wall clock time and date at job start Tue Mar 31 2020 03:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35122 * 125.55060 * 2 1 4 4 C 1.40982 * 108.23759 * 180.02562 * 3 2 1 5 5 N 1.33308 * 126.35867 * 180.02562 * 4 3 2 6 6 C 1.32914 * 119.99399 * 359.96788 * 5 4 3 7 7 O 1.21587 * 120.00394 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.99588 * 180.02562 * 6 5 4 9 9 H 1.09006 * 110.62807 * 61.65686 * 8 6 5 10 10 C 1.55141 * 110.70898 * 184.94776 * 8 6 5 11 11 C 1.54910 * 101.65629 * 154.03500 * 10 8 6 12 12 N 1.47841 * 104.79547 * 322.93761 * 11 10 8 13 13 C 1.46900 * 110.99999 * 146.36426 * 12 11 10 14 14 C 1.47437 * 108.57185 * 24.09295 * 12 11 10 15 15 N 1.37282 * 107.28628 * 359.75566 * 4 3 2 16 16 H 0.97004 * 126.34757 * 180.25837 * 15 4 3 17 17 N 1.36332 * 125.54567 * 180.02562 * 2 1 3 18 18 C 1.46498 * 125.86868 * 359.95464 * 17 2 1 19 19 C 1.50695 * 109.46983 * 85.00117 * 18 17 2 20 20 H 1.07999 * 120.00538 * 359.97438 * 19 18 17 21 21 C 1.37881 * 119.99661 * 180.02562 * 19 18 17 22 22 N 1.31520 * 120.00186 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00030 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47297 * 89.99863 * 23 21 19 25 25 H 1.48503 * 109.47261 * 330.00044 * 23 21 19 26 26 H 1.48500 * 109.47454 * 210.00037 * 23 21 19 27 27 H 1.08995 * 109.46910 * 269.97115 * 1 2 3 28 28 H 1.09002 * 109.46933 * 29.97225 * 1 2 3 29 29 H 1.08999 * 109.47115 * 149.97429 * 1 2 3 30 30 H 1.07993 * 125.88047 * 0.02890 * 3 2 1 31 31 H 1.08997 * 110.99474 * 272.13337 * 10 8 6 32 32 H 1.09011 * 110.98420 * 35.94821 * 10 8 6 33 33 H 1.08993 * 110.37496 * 204.10525 * 11 10 8 34 34 H 1.08999 * 110.45935 * 81.81229 * 11 10 8 35 35 H 1.09009 * 109.46823 * 299.14989 * 13 12 11 36 36 H 1.08997 * 109.47465 * 59.15388 * 13 12 11 37 37 H 1.09005 * 109.47168 * 179.15503 * 13 12 11 38 38 H 1.09005 * 109.89162 * 239.60871 * 14 12 11 39 39 H 1.08996 * 109.89224 * 118.41684 * 14 12 11 40 40 H 1.09002 * 109.46847 * 324.99815 * 18 17 2 41 41 H 1.09000 * 109.46849 * 205.00195 * 18 17 2 42 42 H 0.97001 * 119.99697 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2927 1.0994 0.0000 4 6 3.6386 0.6798 -0.0006 5 7 4.7126 1.4695 -0.0003 6 6 4.5659 2.7906 0.0000 7 8 3.4524 3.2787 0.0005 8 6 5.7800 3.6833 -0.0003 9 1 6.3760 3.5208 -0.8984 10 6 5.3655 5.1731 0.1253 11 6 6.6286 5.7961 0.7704 12 7 7.1163 4.7683 1.7146 13 6 8.5827 4.7858 1.8003 14 6 6.6289 3.4507 1.2673 15 7 3.6380 -0.6930 0.0046 16 1 4.4190 -1.2683 0.0091 17 7 2.2996 -1.1093 -0.0005 18 6 1.8327 -2.4979 -0.0002 19 6 1.5543 -2.9345 -1.4154 20 1 1.7093 -2.2464 -2.2332 21 6 1.1008 -4.2122 -1.6660 22 7 0.9116 -5.0501 -0.6700 23 14 0.7551 -4.7534 -3.4201 24 1 1.9852 -5.3418 -4.0082 25 1 0.3335 -3.5796 -4.2263 26 1 -0.3284 -5.7689 -3.4205 27 1 -0.3633 -0.0005 1.0276 28 1 -0.3633 0.8903 -0.5134 29 1 -0.3633 -0.8897 -0.5142 30 1 1.9488 2.1231 0.0004 31 1 5.1724 5.6087 -0.8550 32 1 4.4990 5.2835 0.7776 33 1 6.3702 6.7102 1.3048 34 1 7.3825 6.0017 0.0106 35 1 9.0066 4.5708 0.8193 36 1 8.9156 5.7691 2.1325 37 1 8.9140 4.0302 2.5128 38 1 6.0153 2.9982 2.0465 39 1 7.4735 2.8024 1.0342 40 1 0.9194 -2.5739 0.5899 41 1 2.6000 -3.1390 0.4337 42 1 1.0915 -4.7692 0.2409 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000536609792.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:28 Heat of formation + Delta-G solvation = 42.482983 kcal Electronic energy + Delta-G solvation = -23071.839032 eV Core-core repulsion = 19667.392112 eV Total energy + Delta-G solvation = -3404.446920 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.57288 -40.74668 -38.96420 -36.35868 -34.95528 -33.81363 -33.14132 -32.25705 -30.14515 -28.94649 -28.12490 -26.74766 -25.22499 -23.99623 -22.31279 -21.86131 -21.24467 -20.34195 -19.41914 -18.35938 -17.54546 -17.03544 -17.01903 -16.64308 -16.07774 -15.68740 -15.41454 -15.07776 -14.88359 -14.67744 -14.45075 -14.31841 -14.25621 -13.93748 -13.81243 -13.46619 -13.31883 -13.07619 -12.73503 -12.63070 -12.51808 -12.19210 -12.09755 -11.99475 -11.83320 -11.76487 -10.88345 -10.80397 -10.74673 -10.43904 -9.95482 -9.31150 -8.92984 -8.51089 -6.66835 0.02776 0.40620 1.36769 1.53196 1.56271 1.76461 2.42752 2.58301 2.76127 2.95608 3.04240 3.37862 3.55848 3.63078 3.90840 4.05435 4.14446 4.18696 4.35038 4.39252 4.43199 4.53119 4.58857 4.63597 4.66453 4.72859 4.79554 4.84831 4.89741 4.97220 5.01821 5.08442 5.12832 5.21825 5.30003 5.41386 5.79462 5.92440 5.93422 6.04456 6.12804 6.28919 6.43962 6.76407 7.09077 7.79281 8.53388 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.030696 B = 0.002993 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.955353 B = 9353.483993 C = 9609.131037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.198 3.802 3 C -0.345 4.345 4 C 0.457 3.543 5 N -0.708 5.708 6 C 0.492 3.508 7 O -0.609 6.609 8 C -0.102 4.102 9 H 0.102 0.898 10 C -0.109 4.109 11 C 0.047 3.953 12 N -0.553 5.553 13 C 0.020 3.980 14 C 0.075 3.925 15 N -0.463 5.463 16 H 0.453 0.547 17 N -0.344 5.344 18 C 0.254 3.746 19 C -0.636 4.636 20 H 0.050 0.950 21 C -0.005 4.005 22 N -0.918 5.918 23 Si 1.114 2.886 24 H -0.277 1.277 25 H -0.274 1.274 26 H -0.278 1.278 27 H 0.110 0.890 28 H 0.112 0.888 29 H 0.081 0.919 30 H 0.177 0.823 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.064 0.936 35 H 0.034 0.966 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.053 0.947 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.038 0.962 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.948 13.249 2.273 15.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.072 3.928 3 C -0.376 4.376 4 C 0.208 3.792 5 N -0.472 5.472 6 C 0.278 3.722 7 O -0.493 6.493 8 C -0.124 4.124 9 H 0.120 0.880 10 C -0.147 4.147 11 C -0.080 4.080 12 N -0.277 5.277 13 C -0.128 4.128 14 C -0.053 4.053 15 N -0.185 5.185 16 H 0.301 0.699 17 N -0.130 5.130 18 C 0.136 3.864 19 C -0.674 4.674 20 H 0.068 0.932 21 C -0.207 4.207 22 N -0.553 5.553 23 Si 0.936 3.064 24 H -0.203 1.203 25 H -0.199 1.199 26 H -0.203 1.203 27 H 0.128 0.872 28 H 0.130 0.870 29 H 0.100 0.900 30 H 0.194 0.806 31 H 0.102 0.898 32 H 0.082 0.918 33 H 0.110 0.890 34 H 0.082 0.918 35 H 0.052 0.948 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.056 0.944 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.519 11.679 1.897 13.509 hybrid contribution 0.791 0.659 0.216 1.052 sum 7.310 12.337 2.113 14.495 Atomic orbital electron populations 1.20842 0.83509 1.05687 1.05497 1.21947 0.96122 0.84460 0.90310 1.22227 0.91361 1.00359 1.23672 1.19478 0.92318 0.82502 0.84872 1.68854 1.28058 1.05876 1.44407 1.21134 0.89664 0.86472 0.74908 1.90498 1.28464 1.79551 1.50770 1.22123 0.94856 0.94844 1.00567 0.88039 1.22570 0.98220 0.92224 1.01686 1.23098 0.95436 0.95491 0.93957 1.63584 1.11694 1.03793 1.48675 1.22603 0.86009 1.03464 1.00755 1.22427 0.97730 0.91194 0.93941 1.44494 0.98803 1.05075 1.70153 0.69862 1.47538 0.93417 1.07677 1.64370 1.19820 0.95831 0.72076 0.98656 1.22410 1.51201 1.01437 0.92348 0.93167 1.27012 0.92454 0.92545 1.08701 1.70937 1.45482 1.38171 1.00710 0.82917 0.77466 0.76172 0.69876 1.20326 1.19932 1.20312 0.87155 0.86953 0.90035 0.80595 0.89821 0.91829 0.89011 0.91764 0.94784 0.89936 0.91194 0.92882 0.91365 0.91686 0.94368 0.92477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.57 9.92 71.24 0.71 -1.86 16 2 C 0.20 6.93 6.93 41.14 0.29 7.21 16 3 C -0.34 -13.29 9.41 22.22 0.21 -13.08 16 4 C 0.46 18.18 8.07 133.82 1.08 19.26 16 5 N -0.71 -28.20 10.44 -309.88 -3.24 -31.44 16 6 C 0.49 19.17 6.90 87.94 0.61 19.78 16 7 O -0.61 -26.34 12.67 -3.99 -0.05 -26.39 16 8 C -0.10 -3.07 3.41 -10.36 -0.04 -3.10 16 9 H 0.10 2.82 8.14 -2.38 -0.02 2.81 16 10 C -0.11 -2.86 6.13 31.98 0.20 -2.66 16 11 C 0.05 0.98 6.73 86.77 0.58 1.57 16 12 N -0.55 -13.10 5.44 -911.70 -4.96 -18.07 16 13 C 0.02 0.35 9.12 127.69 1.16 1.51 16 14 C 0.08 2.09 6.44 86.65 0.56 2.65 16 15 N -0.46 -16.92 7.37 -54.81 -0.40 -17.32 16 16 H 0.45 14.55 8.96 -213.28 -1.91 12.64 16 17 N -0.34 -12.97 3.63 -337.51 -1.23 -14.20 16 18 C 0.25 10.39 5.02 85.63 0.43 10.82 16 19 C -0.64 -29.94 9.39 25.60 0.24 -29.70 16 20 H 0.05 2.49 7.81 -2.91 -0.02 2.47 16 21 C -0.01 -0.24 5.46 84.65 0.46 0.22 16 22 N -0.92 -47.24 13.65 21.45 0.29 -46.95 16 23 Si 1.11 43.95 29.90 68.60 2.05 46.00 16 24 H -0.28 -10.62 7.11 99.48 0.71 -9.91 16 25 H -0.27 -10.28 7.11 99.48 0.71 -9.58 16 26 H -0.28 -10.88 7.11 99.48 0.71 -10.17 16 27 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 28 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.08 2.36 7.80 -2.39 -0.02 2.34 16 30 H 0.18 7.12 5.77 -2.91 -0.02 7.10 16 31 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.06 1.97 7.49 -2.38 -0.02 1.95 16 33 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.06 1.10 7.78 -2.39 -0.02 1.08 16 35 H 0.03 0.55 8.10 -2.38 -0.02 0.53 16 36 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 38 H 0.05 1.73 7.81 -2.38 -0.02 1.71 16 39 H 0.07 1.74 7.58 -2.39 -0.02 1.73 16 40 H 0.07 2.60 7.75 -2.39 -0.02 2.58 16 41 H 0.04 1.60 8.01 -2.39 -0.02 1.58 16 42 H 0.27 13.32 7.22 -92.71 -0.67 12.65 16 Total: -1.00 -61.67 346.44 -1.83 -63.50 By element: Atomic # 1 Polarization: 33.05 SS G_CDS: -0.78 Total: 32.26 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: 6.49 Total: 12.59 kcal Atomic # 7 Polarization: -118.43 SS G_CDS: -9.54 Total: -127.97 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -0.05 Total: -26.39 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.05 Total: 46.00 kcal Total: -61.67 -1.83 -63.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000536609792.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.987 kcal (2) G-P(sol) polarization free energy of solvation -61.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds