Wall clock time and date at job start Tue Mar 31 2020 04:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47373 * 2 1 4 4 C 1.50694 * 109.47179 * 120.00262 * 2 1 3 5 5 O 1.21593 * 120.00125 * 93.62855 * 4 2 1 6 6 N 1.32909 * 120.00237 * 273.62914 * 4 2 1 7 7 C 1.33304 * 120.00042 * 179.97438 * 6 4 2 8 8 C 1.40977 * 126.35967 * 359.97438 * 7 6 4 9 9 C 1.35120 * 108.24018 * 180.02562 * 8 7 6 10 10 N 1.36337 * 108.89929 * 359.97438 * 9 8 7 11 11 C 1.46503 * 125.86184 * 179.97438 * 10 9 8 12 12 C 1.50697 * 109.46947 * 85.02793 * 11 10 9 13 13 H 1.07996 * 120.00445 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99564 * 179.72613 * 12 11 10 15 15 N 1.31517 * 120.00521 * 0.26984 * 14 12 11 16 16 Si 1.86807 * 119.99888 * 180.27450 * 14 12 11 17 17 H 1.48493 * 109.47024 * 59.99291 * 16 14 12 18 18 H 1.48497 * 109.47036 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46731 * 299.99734 * 16 14 12 20 20 N 1.37285 * 126.35497 * 180.30972 * 7 6 4 21 21 H 0.97003 * 126.34979 * 359.97098 * 20 7 6 22 22 N 1.46910 * 109.46892 * 240.00343 * 2 1 3 23 23 C 1.47478 * 110.99560 * 164.59138 * 22 2 1 24 24 C 1.53517 * 87.92955 * 221.29199 * 23 22 2 25 25 C 1.52999 * 114.17153 * 272.38182 * 24 23 22 26 26 C 1.47471 * 110.99832 * 68.61897 * 22 2 1 27 27 H 1.08991 * 109.47439 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47013 * 300.00497 * 1 2 3 29 29 H 1.09007 * 109.47105 * 59.99831 * 1 2 3 30 30 H 1.07997 * 125.88134 * 0.03135 * 8 7 6 31 31 H 1.08004 * 125.55138 * 180.02562 * 9 8 7 32 32 H 1.09002 * 109.47062 * 325.02256 * 11 10 9 33 33 H 1.08999 * 109.47097 * 205.02769 * 11 10 9 34 34 H 0.96997 * 120.00111 * 180.02562 * 15 14 12 35 35 H 1.08999 * 113.48017 * 336.05560 * 23 22 2 36 36 H 1.09004 * 113.47728 * 106.53156 * 23 22 2 37 37 H 1.08998 * 114.16535 * 139.67059 * 24 23 22 38 38 H 1.09004 * 109.46802 * 153.84292 * 25 24 23 39 39 H 1.08996 * 109.46569 * 273.83650 * 25 24 23 40 40 H 1.08989 * 109.47232 * 33.84048 * 25 24 23 41 41 H 1.09000 * 113.47917 * 253.46658 * 26 22 2 42 42 H 1.08998 * 113.48127 * 23.93747 * 26 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.2978 -1.8960 1.1821 6 7 2.1852 -0.0411 2.3684 7 6 2.6290 -0.6697 3.4569 8 6 2.9744 -2.0332 3.5522 9 6 3.3766 -2.2801 4.8183 10 7 3.3025 -1.1248 5.5384 11 6 3.6511 -0.9714 6.9531 12 6 5.1325 -0.7271 7.0818 13 1 5.7525 -0.6902 6.1983 14 6 5.6956 -0.5455 8.3272 15 7 4.9408 -0.5908 9.4032 16 14 7.5308 -0.2351 8.4862 17 1 7.8895 1.0015 7.7464 18 1 7.8831 -0.0736 9.9197 19 1 8.2785 -1.3858 7.9188 20 7 2.8287 -0.1109 4.6949 21 1 2.6732 0.8148 4.9397 22 7 2.0196 -0.6925 -1.1996 23 6 3.4472 -0.4035 -1.4308 24 6 3.1232 -0.2826 -2.9265 25 6 3.1844 -1.6071 -3.6899 26 6 1.7225 0.0851 -2.4169 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 2.9259 -2.7560 2.7512 31 1 3.7044 -3.2367 5.1978 32 1 3.3842 -1.8796 7.4936 33 1 3.1056 -0.1258 7.3721 34 1 5.3369 -0.4627 10.2793 35 1 3.7792 0.5324 -0.9814 36 1 4.1036 -1.2413 -1.1951 37 1 3.6426 0.5320 -3.4311 38 1 2.5306 -1.5552 -4.5605 39 1 4.2082 -1.7921 -4.0149 40 1 2.8580 -2.4175 -3.0382 41 1 0.9172 -0.3385 -3.0170 42 1 1.5943 1.1514 -2.2306 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000553126943.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:16 Heat of formation + Delta-G solvation = 102.410084 kcal Electronic energy + Delta-G solvation = -22964.574412 eV Core-core repulsion = 19562.726126 eV Total energy + Delta-G solvation = -3401.848286 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.91140 -40.38475 -38.11994 -34.30242 -33.22728 -32.92065 -31.10427 -30.68377 -29.44678 -26.93018 -26.13264 -25.08996 -23.88742 -22.70188 -21.38789 -21.03056 -19.04281 -18.88509 -17.16643 -16.82871 -16.27308 -15.87761 -15.10513 -14.99042 -14.87182 -14.65886 -14.26267 -14.10194 -13.53317 -13.21335 -13.09780 -12.93473 -12.74049 -12.57621 -12.06884 -12.02855 -11.91099 -11.80472 -11.54226 -11.37989 -11.07307 -11.00481 -10.57751 -10.50633 -10.42951 -10.34371 -9.61073 -9.25155 -9.05606 -8.94766 -8.69935 -8.24800 -6.99852 -6.53232 -4.69404 1.63661 2.02903 2.97990 3.05350 3.11085 3.14400 3.93888 4.03707 4.24602 4.29044 4.40040 4.76874 4.79925 4.86447 5.04206 5.21736 5.35289 5.36238 5.45482 5.48864 5.59172 5.69383 5.75467 5.84235 5.86950 5.92518 5.95970 5.97136 6.05910 6.25057 6.34219 6.38397 6.47028 6.51087 6.52563 6.72885 7.15723 7.33968 7.44517 7.48115 7.60754 7.93831 8.33176 8.40203 9.01405 9.41760 10.49307 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.026778 B = 0.002951 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.367889 B = 9485.707346 C = 9988.586243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.054 3.946 3 H 0.063 0.937 4 C 0.500 3.500 5 O -0.566 6.566 6 N -0.705 5.705 7 C 0.470 3.530 8 C -0.333 4.333 9 C 0.163 3.837 10 N -0.340 5.340 11 C 0.254 3.746 12 C -0.560 4.560 13 H 0.069 0.931 14 C 0.071 3.929 15 N -0.886 5.886 16 Si 0.911 3.089 17 H -0.273 1.273 18 H -0.282 1.282 19 H -0.271 1.271 20 N -0.466 5.466 21 H 0.445 0.555 22 N -0.445 5.445 23 C 0.004 3.996 24 C -0.121 4.121 25 C -0.127 4.127 26 C 0.000 4.000 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.184 0.816 31 H 0.189 0.811 32 H 0.069 0.931 33 H 0.052 0.948 34 H 0.273 0.727 35 H 0.065 0.935 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.068 0.932 41 H 0.083 0.917 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.704 1.106 -14.954 15.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.058 4.058 3 H 0.081 0.919 4 C 0.285 3.715 5 O -0.446 6.446 6 N -0.470 5.470 7 C 0.220 3.780 8 C -0.365 4.365 9 C 0.017 3.983 10 N -0.125 5.125 11 C 0.138 3.862 12 C -0.598 4.598 13 H 0.087 0.913 14 C -0.135 4.135 15 N -0.523 5.523 16 Si 0.737 3.263 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.196 1.196 20 N -0.189 5.189 21 H 0.292 0.708 22 N -0.169 5.169 23 C -0.125 4.125 24 C -0.140 4.140 25 C -0.184 4.184 26 C -0.129 4.129 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.201 0.799 31 H 0.206 0.794 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.101 0.899 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.986 0.786 -14.326 15.189 hybrid contribution 1.318 1.069 0.532 1.779 sum -3.668 1.856 -13.794 14.394 Atomic orbital electron populations 1.21586 0.92710 1.02692 1.01757 1.21807 0.97048 0.96351 0.90620 0.91903 1.20351 0.77799 0.85964 0.87436 1.90523 1.49080 1.18273 1.86727 1.68702 1.40563 1.38932 0.98839 1.19209 0.85629 0.88838 0.84289 1.22470 1.18109 0.97589 0.98333 1.22895 0.93351 0.90275 0.91795 1.48059 1.54866 1.00684 1.08879 1.20086 0.97365 1.00642 0.68151 1.21361 0.91690 1.52967 0.93787 0.91253 1.24956 0.99517 0.93912 0.95074 1.69885 1.36418 1.47341 0.98636 0.86332 0.83263 0.79316 0.77404 1.19843 1.20761 1.19625 1.44586 1.61000 1.07834 1.05430 0.70805 1.68952 1.05528 1.42174 1.00202 1.23819 0.92702 1.01174 0.94800 1.22566 0.96858 0.98909 0.95633 1.21467 1.01217 0.96179 0.99522 1.23881 0.98077 0.97326 0.93660 0.91837 0.91561 0.92564 0.79932 0.79438 0.91306 0.93015 0.91730 0.91679 0.89668 0.90288 0.92648 0.92749 0.91255 0.89887 0.91623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.78 9.21 37.16 0.34 -1.44 16 2 C 0.05 0.85 2.13 -68.86 -0.15 0.70 16 3 H 0.06 0.97 7.56 -51.93 -0.39 0.57 16 4 C 0.50 9.87 6.52 -11.82 -0.08 9.79 16 5 O -0.57 -12.45 13.54 5.28 0.07 -12.38 16 6 N -0.71 -14.04 10.51 -11.59 -0.12 -14.16 16 7 C 0.47 9.17 8.07 -155.19 -1.25 7.92 16 8 C -0.33 -6.25 9.51 -39.65 -0.38 -6.63 16 9 C 0.16 2.75 11.46 -16.66 -0.19 2.56 16 10 N -0.34 -6.27 3.63 -62.23 -0.23 -6.50 16 11 C 0.25 5.24 6.19 -5.19 -0.03 5.21 16 12 C -0.56 -13.23 9.39 -34.44 -0.32 -13.55 16 13 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 14 C 0.07 1.71 5.46 -17.82 -0.10 1.62 16 15 N -0.89 -22.37 13.29 55.43 0.74 -21.63 16 16 Si 0.91 19.15 29.54 -169.99 -5.02 14.13 16 17 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 18 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 19 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 20 N -0.47 -8.33 7.37 31.32 0.23 -8.10 16 21 H 0.44 7.00 8.96 -182.56 -1.64 5.36 16 22 N -0.45 -6.60 5.57 -237.99 -1.33 -7.93 16 23 C 0.00 0.06 6.87 -7.55 -0.05 0.00 16 24 C -0.12 -1.27 4.77 -90.08 -0.43 -1.70 16 25 C -0.13 -1.25 9.71 37.16 0.36 -0.89 16 26 C 0.00 0.00 6.32 -7.55 -0.05 -0.05 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.63 7.47 -51.92 -0.39 0.24 16 30 H 0.18 3.63 5.77 -52.49 -0.30 3.33 16 31 H 0.19 2.49 8.06 -52.48 -0.42 2.07 16 32 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 33 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 35 H 0.06 0.88 7.68 -51.93 -0.40 0.48 16 36 H 0.08 1.28 8.12 -51.93 -0.42 0.86 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.82 7.92 -51.94 -0.41 0.41 16 41 H 0.08 0.85 8.12 -51.93 -0.42 0.43 16 42 H 0.07 0.67 7.79 -51.93 -0.40 0.26 16 LS Contribution 350.95 15.07 5.29 5.29 Total: -1.00 -28.88 350.95 -10.39 -39.27 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -7.70 Total: 8.45 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: -2.32 Total: 3.55 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: -0.71 Total: -58.32 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.07 Total: -12.38 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.02 Total: 14.13 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -28.88 -10.39 -39.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000553126943.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.680 kcal (2) G-P(sol) polarization free energy of solvation -28.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds